data_6TX5 # _model_server_result.job_id B8Rz2WKL3gN1SqCM2sU0ug _model_server_result.datetime_utc '2024-11-30 04:08:19' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6tx5 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":203}' # _entry.id 6TX5 # _exptl.entry_id 6TX5 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 82.104 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 4-METHYLIMIDAZOLE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6TX5 _cell.length_a 42.206 _cell.length_b 54.323 _cell.length_c 56.652 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6TX5 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall 'P 2ac 2ab' _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OE2 GLU 33 A GLU 45 1_555 B NA NA . A NA 201 4_545 ? ? ? ? ? ? ? ? ? ? ? ? 2.676 ? metalc ? metalc2 A O THR 34 A THR 46 1_555 B NA NA . A NA 201 4_545 ? ? ? ? ? ? ? ? ? ? ? ? 2.75 ? metalc ? metalc3 A O THR 84 A THR 96 1_555 C NA NA . A NA 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.733 ? metalc ? metalc4 A OE1 GLU 89 A GLU 101 1_555 C NA NA . A NA 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.663 ? metalc ? metalc5 B NA NA . A NA 201 1_555 E O HOH . A HOH 314 4_445 ? ? ? ? ? ? ? ? ? ? ? ? 2.809 ? metalc ? metalc6 B NA NA . A NA 201 1_555 E O HOH . A HOH 371 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.791 ? metalc ? metalc7 C NA NA . A NA 202 1_555 E O HOH . A HOH 445 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.634 ? # _chem_comp.formula 'C4 H6 N2' _chem_comp.formula_weight 82.104 _chem_comp.id 4MZ _chem_comp.mon_nstd_flag . _chem_comp.name 4-METHYLIMIDAZOLE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CG ND1 4MZ sing 1 n y CG CD2 4MZ doub 2 n y CG C4 4MZ sing 3 n n ND1 CE1 4MZ doub 4 n y CD2 NE2 4MZ sing 5 n y CD2 HD2 4MZ sing 6 n n CE1 NE2 4MZ sing 7 n y CE1 HE1 4MZ sing 8 n n NE2 HE2 4MZ sing 9 n n C4 H41 4MZ sing 10 n n C4 H42 4MZ sing 11 n n C4 H43 4MZ sing 12 n n # _atom_sites.entry_id 6TX5 _atom_sites.fract_transf_matrix[1][1] 0.023693 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.018408 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.017652 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NA A 1 201 1 NA NA . C 2 NA A 1 202 2 NA NA . D 3 4MZ A 1 203 1 4MZ LIG . E 4 HOH A 1 301 88 HOH HOH . E 4 HOH A 2 302 73 HOH HOH . E 4 HOH A 3 303 198 HOH HOH . E 4 HOH A 4 304 148 HOH HOH . E 4 HOH A 5 305 69 HOH HOH . E 4 HOH A 6 306 80 HOH HOH . E 4 HOH A 7 307 87 HOH HOH . E 4 HOH A 8 308 63 HOH HOH . E 4 HOH A 9 309 106 HOH HOH . E 4 HOH A 10 310 37 HOH HOH . E 4 HOH A 11 311 121 HOH HOH . E 4 HOH A 12 312 195 HOH HOH . E 4 HOH A 13 313 62 HOH HOH . E 4 HOH A 14 314 20 HOH HOH . E 4 HOH A 15 315 5 HOH HOH . E 4 HOH A 16 316 51 HOH HOH . E 4 HOH A 17 317 50 HOH HOH . E 4 HOH A 18 318 39 HOH HOH . E 4 HOH A 19 319 70 HOH HOH . E 4 HOH A 20 320 8 HOH HOH . E 4 HOH A 21 321 119 HOH HOH . E 4 HOH A 22 322 32 HOH HOH . E 4 HOH A 23 323 65 HOH HOH . E 4 HOH A 24 324 101 HOH HOH . E 4 HOH A 25 325 53 HOH HOH . E 4 HOH A 26 326 155 HOH HOH . E 4 HOH A 27 327 14 HOH HOH . E 4 HOH A 28 328 30 HOH HOH . E 4 HOH A 29 329 126 HOH HOH . E 4 HOH A 30 330 149 HOH HOH . E 4 HOH A 31 331 11 HOH HOH . E 4 HOH A 32 332 151 HOH HOH . E 4 HOH A 33 333 44 HOH HOH . E 4 HOH A 34 334 22 HOH HOH . E 4 HOH A 35 335 180 HOH HOH . E 4 HOH A 36 336 21 HOH HOH . E 4 HOH A 37 337 3 HOH HOH . E 4 HOH A 38 338 33 HOH HOH . E 4 HOH A 39 339 132 HOH HOH . E 4 HOH A 40 340 42 HOH HOH . E 4 HOH A 41 341 138 HOH HOH . E 4 HOH A 42 342 10 HOH HOH . E 4 HOH A 43 343 34 HOH HOH . E 4 HOH A 44 344 61 HOH HOH . E 4 HOH A 45 345 90 HOH HOH . E 4 HOH A 46 346 40 HOH HOH . E 4 HOH A 47 347 13 HOH HOH . E 4 HOH A 48 348 15 HOH HOH . E 4 HOH A 49 349 79 HOH HOH . E 4 HOH A 50 350 41 HOH HOH . E 4 HOH A 51 351 68 HOH HOH . E 4 HOH A 52 352 59 HOH HOH . E 4 HOH A 53 353 17 HOH HOH . E 4 HOH A 54 354 164 HOH HOH . E 4 HOH A 55 355 186 HOH HOH . E 4 HOH A 56 356 74 HOH HOH . E 4 HOH A 57 357 31 HOH HOH . E 4 HOH A 58 358 152 HOH HOH . E 4 HOH A 59 359 179 HOH HOH . E 4 HOH A 60 360 86 HOH HOH . E 4 HOH A 61 361 57 HOH HOH . E 4 HOH A 62 362 91 HOH HOH . E 4 HOH A 63 363 199 HOH HOH . E 4 HOH A 64 364 85 HOH HOH . E 4 HOH A 65 365 35 HOH HOH . E 4 HOH A 66 366 114 HOH HOH . E 4 HOH A 67 367 28 HOH HOH . E 4 HOH A 68 368 1 HOH HOH . E 4 HOH A 69 369 27 HOH HOH . E 4 HOH A 70 370 130 HOH HOH . E 4 HOH A 71 371 117 HOH HOH . E 4 HOH A 72 372 43 HOH HOH . E 4 HOH A 73 373 161 HOH HOH . E 4 HOH A 74 374 75 HOH HOH . E 4 HOH A 75 375 6 HOH HOH . E 4 HOH A 76 376 36 HOH HOH . E 4 HOH A 77 377 18 HOH HOH . E 4 HOH A 78 378 174 HOH HOH . E 4 HOH A 79 379 19 HOH HOH . E 4 HOH A 80 380 169 HOH HOH . E 4 HOH A 81 381 163 HOH HOH . E 4 HOH A 82 382 197 HOH HOH . E 4 HOH A 83 383 60 HOH HOH . E 4 HOH A 84 384 2 HOH HOH . E 4 HOH A 85 385 157 HOH HOH . E 4 HOH A 86 386 77 HOH HOH . E 4 HOH A 87 387 7 HOH HOH . E 4 HOH A 88 388 72 HOH HOH . E 4 HOH A 89 389 12 HOH HOH . E 4 HOH A 90 390 16 HOH HOH . E 4 HOH A 91 391 66 HOH HOH . E 4 HOH A 92 392 26 HOH HOH . E 4 HOH A 93 393 23 HOH HOH . E 4 HOH A 94 394 125 HOH HOH . E 4 HOH A 95 395 45 HOH HOH . E 4 HOH A 96 396 136 HOH HOH . E 4 HOH A 97 397 47 HOH HOH . E 4 HOH A 98 398 154 HOH HOH . E 4 HOH A 99 399 139 HOH HOH . E 4 HOH A 100 400 24 HOH HOH . E 4 HOH A 101 401 48 HOH HOH . E 4 HOH A 102 402 52 HOH HOH . E 4 HOH A 103 403 196 HOH HOH . E 4 HOH A 104 404 173 HOH HOH . E 4 HOH A 105 405 162 HOH HOH . E 4 HOH A 106 406 84 HOH HOH . E 4 HOH A 107 407 38 HOH HOH . E 4 HOH A 108 408 192 HOH HOH . E 4 HOH A 109 409 64 HOH HOH . E 4 HOH A 110 410 56 HOH HOH . E 4 HOH A 111 411 9 HOH HOH . E 4 HOH A 112 412 175 HOH HOH . E 4 HOH A 113 413 167 HOH HOH . E 4 HOH A 114 414 29 HOH HOH . E 4 HOH A 115 415 78 HOH HOH . E 4 HOH A 116 416 49 HOH HOH . E 4 HOH A 117 417 71 HOH HOH . E 4 HOH A 118 418 4 HOH HOH . E 4 HOH A 119 419 109 HOH HOH . E 4 HOH A 120 420 67 HOH HOH . E 4 HOH A 121 421 82 HOH HOH . E 4 HOH A 122 422 76 HOH HOH . E 4 HOH A 123 423 55 HOH HOH . E 4 HOH A 124 424 123 HOH HOH . E 4 HOH A 125 425 58 HOH HOH . E 4 HOH A 126 426 46 HOH HOH . E 4 HOH A 127 427 25 HOH HOH . E 4 HOH A 128 428 135 HOH HOH . E 4 HOH A 129 429 142 HOH HOH . E 4 HOH A 130 430 141 HOH HOH . E 4 HOH A 131 431 176 HOH HOH . E 4 HOH A 132 432 184 HOH HOH . E 4 HOH A 133 433 194 HOH HOH . E 4 HOH A 134 434 147 HOH HOH . E 4 HOH A 135 435 170 HOH HOH . E 4 HOH A 136 436 182 HOH HOH . E 4 HOH A 137 437 124 HOH HOH . E 4 HOH A 138 438 118 HOH HOH . E 4 HOH A 139 439 127 HOH HOH . E 4 HOH A 140 440 165 HOH HOH . E 4 HOH A 141 441 54 HOH HOH . E 4 HOH A 142 442 160 HOH HOH . E 4 HOH A 143 443 178 HOH HOH . E 4 HOH A 144 444 108 HOH HOH . E 4 HOH A 145 445 105 HOH HOH . E 4 HOH A 146 446 193 HOH HOH . E 4 HOH A 147 447 146 HOH HOH . E 4 HOH A 148 448 129 HOH HOH . E 4 HOH A 149 449 191 HOH HOH . E 4 HOH A 150 450 171 HOH HOH . E 4 HOH A 151 451 150 HOH HOH . E 4 HOH A 152 452 95 HOH HOH . E 4 HOH A 153 453 107 HOH HOH . E 4 HOH A 154 454 96 HOH HOH . E 4 HOH A 155 455 137 HOH HOH . E 4 HOH A 156 456 185 HOH HOH . E 4 HOH A 157 457 183 HOH HOH . E 4 HOH A 158 458 134 HOH HOH . E 4 HOH A 159 459 103 HOH HOH . E 4 HOH A 160 460 120 HOH HOH . E 4 HOH A 161 461 115 HOH HOH . E 4 HOH A 162 462 181 HOH HOH . E 4 HOH A 163 463 128 HOH HOH . E 4 HOH A 164 464 97 HOH HOH . E 4 HOH A 165 465 92 HOH HOH . E 4 HOH A 166 466 111 HOH HOH . E 4 HOH A 167 467 116 HOH HOH . E 4 HOH A 168 468 140 HOH HOH . E 4 HOH A 169 469 133 HOH HOH . E 4 HOH A 170 470 99 HOH HOH . E 4 HOH A 171 471 122 HOH HOH . E 4 HOH A 172 472 187 HOH HOH . E 4 HOH A 173 473 189 HOH HOH . E 4 HOH A 174 474 110 HOH HOH . E 4 HOH A 175 475 102 HOH HOH . E 4 HOH A 176 476 113 HOH HOH . E 4 HOH A 177 477 177 HOH HOH . E 4 HOH A 178 478 81 HOH HOH . E 4 HOH A 179 479 172 HOH HOH . E 4 HOH A 180 480 98 HOH HOH . E 4 HOH A 181 481 100 HOH HOH . E 4 HOH A 182 482 156 HOH HOH . E 4 HOH A 183 483 94 HOH HOH . E 4 HOH A 184 484 89 HOH HOH . E 4 HOH A 185 485 112 HOH HOH . E 4 HOH A 186 486 131 HOH HOH . E 4 HOH A 187 487 104 HOH HOH . E 4 HOH A 188 488 166 HOH HOH . E 4 HOH A 189 489 93 HOH HOH . E 4 HOH A 190 490 143 HOH HOH . E 4 HOH A 191 491 159 HOH HOH . E 4 HOH A 192 492 145 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CG 4MZ . . . D 3 8.539 -13.051 -17.28 0.89 19.32 ? CG 4MZ 203 A 1 HETATM 2 N ND1 4MZ . . . D 3 8.631 -12.343 -18.457 0.89 18.51 ? ND1 4MZ 203 A 1 HETATM 3 C CD2 4MZ . . . D 3 7.354 -13.712 -17.247 0.89 20.15 ? CD2 4MZ 203 A 1 HETATM 4 C CE1 4MZ . . . D 3 7.528 -12.629 -19.127 0.89 19.92 ? CE1 4MZ 203 A 1 HETATM 5 N NE2 4MZ . . . D 3 6.718 -13.428 -18.427 0.89 18.91 ? NE2 4MZ 203 A 1 HETATM 6 C C4 4MZ . . . D 3 9.639 -13.006 -16.265 0.89 20.6 ? C4 4MZ 203 A 1 HETATM 7 H HD2 4MZ . . . D 3 6.928 -14.354 -16.477 0.89 24.19 ? HD2 4MZ 203 A 1 HETATM 8 H HE1 4MZ . . . D 3 7.31 -12.257 -20.127 0.89 23.91 ? HE1 4MZ 203 A 1 HETATM 9 H HE2 4MZ . . . D 3 5.802 -13.773 -18.695 0.89 22.69 ? HE2 4MZ 203 A 1 HETATM 10 H H41 4MZ . . . D 3 10.619 -13.053 -16.739 0.89 24.72 ? H41 4MZ 203 A 1 HETATM 11 H H42 4MZ . . . D 3 9.603 -12.089 -15.68 0.89 24.72 ? H42 4MZ 203 A 1 HETATM 12 H H43 4MZ . . . D 3 9.573 -13.841 -15.569 0.89 24.72 ? H43 4MZ 203 A 1 # _model_server_stats.io_time_ms 58 _model_server_stats.parse_time_ms 19 _model_server_stats.create_model_time_ms 18 _model_server_stats.query_time_ms 291 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 12 #