data_6TX7 # _model_server_result.job_id LBAWD9Kz1XTS8rI9vBB4FQ _model_server_result.datetime_utc '2024-11-22 08:52:54' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6tx7 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":204}' # _entry.id 6TX7 # _exptl.entry_id 6TX7 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 99.131 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description piperidin-2-one _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6TX7 _cell.length_a 42.411 _cell.length_b 54.482 _cell.length_c 56.69 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6TX7 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall 'P 2ac 2ab' _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 E N N ? 4 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OE2 GLU 33 A GLU 45 1_555 C NA NA . A NA 202 4_545 ? ? ? ? ? ? ? ? ? ? ? ? 2.69 ? metalc ? metalc2 A O THR 34 A THR 46 1_555 C NA NA . A NA 202 4_545 ? ? ? ? ? ? ? ? ? ? ? ? 2.74 ? metalc ? metalc3 A O THR 84 A THR 96 1_555 D NA NA . A NA 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.706 ? metalc ? metalc4 A OE1 GLU 89 A GLU 101 1_555 D NA NA . A NA 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.672 ? metalc ? metalc5 C NA NA . A NA 202 1_555 G O HOH . A HOH 316 4_445 ? ? ? ? ? ? ? ? ? ? ? ? 2.769 ? metalc ? metalc6 C NA NA . A NA 202 1_555 G O HOH . A HOH 329 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.784 ? metalc ? metalc7 D NA NA . A NA 203 1_555 G O HOH . A HOH 434 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.659 ? # _chem_comp.formula 'C5 H9 N O' _chem_comp.formula_weight 99.131 _chem_comp.id V1L _chem_comp.mon_nstd_flag . _chem_comp.name piperidin-2-one _chem_comp.type non-polymer _chem_comp.pdbx_synonyms valerolactam # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C02 N03 V1L sing 358 n n C02 C08 V1L sing 359 n n N03 C04 V1L sing 360 n n C04 O05 V1L doub 361 n n C04 C06 V1L sing 362 n n C08 C07 V1L sing 363 n n C07 C06 V1L sing 364 n n C06 H1 V1L sing 365 n n C06 H2 V1L sing 366 n n C07 H3 V1L sing 367 n n C07 H4 V1L sing 368 n n C08 H5 V1L sing 369 n n C08 H6 V1L sing 370 n n C02 H7 V1L sing 371 n n C02 H8 V1L sing 372 n n N03 H9 V1L sing 373 n n # _atom_sites.entry_id 6TX7 _atom_sites.fract_transf_matrix[1][1] 0.023579 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.018355 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.01764 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CL A 1 201 1 CL CL . C 3 NA A 1 202 1 NA NA . D 3 NA A 1 203 2 NA NA . E 4 V1L A 1 204 1 V1L LIG . F 4 V1L A 1 205 2 V1L LIG . G 5 HOH A 1 301 120 HOH HOH . G 5 HOH A 2 302 177 HOH HOH . G 5 HOH A 3 303 103 HOH HOH . G 5 HOH A 4 304 136 HOH HOH . G 5 HOH A 5 305 30 HOH HOH . G 5 HOH A 6 306 21 HOH HOH . G 5 HOH A 7 307 88 HOH HOH . G 5 HOH A 8 308 65 HOH HOH . G 5 HOH A 9 309 127 HOH HOH . G 5 HOH A 10 310 90 HOH HOH . G 5 HOH A 11 311 117 HOH HOH . G 5 HOH A 12 312 47 HOH HOH . G 5 HOH A 13 313 129 HOH HOH . G 5 HOH A 14 314 31 HOH HOH . G 5 HOH A 15 315 175 HOH HOH . G 5 HOH A 16 316 18 HOH HOH . G 5 HOH A 17 317 14 HOH HOH . G 5 HOH A 18 318 3 HOH HOH . G 5 HOH A 19 319 68 HOH HOH . G 5 HOH A 20 320 38 HOH HOH . G 5 HOH A 21 321 134 HOH HOH . G 5 HOH A 22 322 60 HOH HOH . G 5 HOH A 23 323 153 HOH HOH . G 5 HOH A 24 324 179 HOH HOH . G 5 HOH A 25 325 7 HOH HOH . G 5 HOH A 26 326 17 HOH HOH . G 5 HOH A 27 327 36 HOH HOH . G 5 HOH A 28 328 13 HOH HOH . G 5 HOH A 29 329 125 HOH HOH . G 5 HOH A 30 330 40 HOH HOH . G 5 HOH A 31 331 32 HOH HOH . G 5 HOH A 32 332 52 HOH HOH . G 5 HOH A 33 333 15 HOH HOH . G 5 HOH A 34 334 27 HOH HOH . G 5 HOH A 35 335 12 HOH HOH . G 5 HOH A 36 336 6 HOH HOH . G 5 HOH A 37 337 58 HOH HOH . G 5 HOH A 38 338 35 HOH HOH . G 5 HOH A 39 339 150 HOH HOH . G 5 HOH A 40 340 87 HOH HOH . G 5 HOH A 41 341 50 HOH HOH . G 5 HOH A 42 342 110 HOH HOH . G 5 HOH A 43 343 121 HOH HOH . G 5 HOH A 44 344 16 HOH HOH . G 5 HOH A 45 345 67 HOH HOH . G 5 HOH A 46 346 128 HOH HOH . G 5 HOH A 47 347 39 HOH HOH . G 5 HOH A 48 348 44 HOH HOH . G 5 HOH A 49 349 86 HOH HOH . G 5 HOH A 50 350 143 HOH HOH . G 5 HOH A 51 351 24 HOH HOH . G 5 HOH A 52 352 19 HOH HOH . G 5 HOH A 53 353 9 HOH HOH . G 5 HOH A 54 354 33 HOH HOH . G 5 HOH A 55 355 151 HOH HOH . G 5 HOH A 56 356 146 HOH HOH . G 5 HOH A 57 357 73 HOH HOH . G 5 HOH A 58 358 5 HOH HOH . G 5 HOH A 59 359 2 HOH HOH . G 5 HOH A 60 360 51 HOH HOH . G 5 HOH A 61 361 116 HOH HOH . G 5 HOH A 62 362 96 HOH HOH . G 5 HOH A 63 363 20 HOH HOH . G 5 HOH A 64 364 23 HOH HOH . G 5 HOH A 65 365 4 HOH HOH . G 5 HOH A 66 366 135 HOH HOH . G 5 HOH A 67 367 1 HOH HOH . G 5 HOH A 68 368 178 HOH HOH . G 5 HOH A 69 369 46 HOH HOH . G 5 HOH A 70 370 29 HOH HOH . G 5 HOH A 71 371 99 HOH HOH . G 5 HOH A 72 372 84 HOH HOH . G 5 HOH A 73 373 56 HOH HOH . G 5 HOH A 74 374 10 HOH HOH . G 5 HOH A 75 375 131 HOH HOH . G 5 HOH A 76 376 154 HOH HOH . G 5 HOH A 77 377 26 HOH HOH . G 5 HOH A 78 378 22 HOH HOH . G 5 HOH A 79 379 102 HOH HOH . G 5 HOH A 80 380 45 HOH HOH . G 5 HOH A 81 381 28 HOH HOH . G 5 HOH A 82 382 118 HOH HOH . G 5 HOH A 83 383 41 HOH HOH . G 5 HOH A 84 384 25 HOH HOH . G 5 HOH A 85 385 138 HOH HOH . G 5 HOH A 86 386 62 HOH HOH . G 5 HOH A 87 387 66 HOH HOH . G 5 HOH A 88 388 48 HOH HOH . G 5 HOH A 89 389 57 HOH HOH . G 5 HOH A 90 390 93 HOH HOH . G 5 HOH A 91 391 123 HOH HOH . G 5 HOH A 92 392 42 HOH HOH . G 5 HOH A 93 393 132 HOH HOH . G 5 HOH A 94 394 159 HOH HOH . G 5 HOH A 95 395 34 HOH HOH . G 5 HOH A 96 396 59 HOH HOH . G 5 HOH A 97 397 43 HOH HOH . G 5 HOH A 98 398 11 HOH HOH . G 5 HOH A 99 399 172 HOH HOH . G 5 HOH A 100 400 167 HOH HOH . G 5 HOH A 101 401 54 HOH HOH . G 5 HOH A 102 402 94 HOH HOH . G 5 HOH A 103 403 55 HOH HOH . G 5 HOH A 104 404 105 HOH HOH . G 5 HOH A 105 405 107 HOH HOH . G 5 HOH A 106 406 8 HOH HOH . G 5 HOH A 107 407 111 HOH HOH . G 5 HOH A 108 408 176 HOH HOH . G 5 HOH A 109 409 49 HOH HOH . G 5 HOH A 110 410 37 HOH HOH . G 5 HOH A 111 411 137 HOH HOH . G 5 HOH A 112 412 122 HOH HOH . G 5 HOH A 113 413 63 HOH HOH . G 5 HOH A 114 414 162 HOH HOH . G 5 HOH A 115 415 64 HOH HOH . G 5 HOH A 116 416 164 HOH HOH . G 5 HOH A 117 417 158 HOH HOH . G 5 HOH A 118 418 61 HOH HOH . G 5 HOH A 119 419 53 HOH HOH . G 5 HOH A 120 420 163 HOH HOH . G 5 HOH A 121 421 113 HOH HOH . G 5 HOH A 122 422 95 HOH HOH . G 5 HOH A 123 423 133 HOH HOH . G 5 HOH A 124 424 139 HOH HOH . G 5 HOH A 125 425 173 HOH HOH . G 5 HOH A 126 426 160 HOH HOH . G 5 HOH A 127 427 155 HOH HOH . G 5 HOH A 128 428 165 HOH HOH . G 5 HOH A 129 429 115 HOH HOH . G 5 HOH A 130 430 140 HOH HOH . G 5 HOH A 131 431 126 HOH HOH . G 5 HOH A 132 432 174 HOH HOH . G 5 HOH A 133 433 156 HOH HOH . G 5 HOH A 134 434 77 HOH HOH . G 5 HOH A 135 435 149 HOH HOH . G 5 HOH A 136 436 168 HOH HOH . G 5 HOH A 137 437 89 HOH HOH . G 5 HOH A 138 438 85 HOH HOH . G 5 HOH A 139 439 114 HOH HOH . G 5 HOH A 140 440 75 HOH HOH . G 5 HOH A 141 441 130 HOH HOH . G 5 HOH A 142 442 83 HOH HOH . G 5 HOH A 143 443 100 HOH HOH . G 5 HOH A 144 444 169 HOH HOH . G 5 HOH A 145 445 108 HOH HOH . G 5 HOH A 146 446 152 HOH HOH . G 5 HOH A 147 447 74 HOH HOH . G 5 HOH A 148 448 147 HOH HOH . G 5 HOH A 149 449 104 HOH HOH . G 5 HOH A 150 450 161 HOH HOH . G 5 HOH A 151 451 80 HOH HOH . G 5 HOH A 152 452 119 HOH HOH . G 5 HOH A 153 453 78 HOH HOH . G 5 HOH A 154 454 112 HOH HOH . G 5 HOH A 155 455 69 HOH HOH . G 5 HOH A 156 456 71 HOH HOH . G 5 HOH A 157 457 145 HOH HOH . G 5 HOH A 158 458 101 HOH HOH . G 5 HOH A 159 459 124 HOH HOH . G 5 HOH A 160 460 76 HOH HOH . G 5 HOH A 161 461 148 HOH HOH . G 5 HOH A 162 462 97 HOH HOH . G 5 HOH A 163 463 106 HOH HOH . G 5 HOH A 164 464 92 HOH HOH . G 5 HOH A 165 465 79 HOH HOH . G 5 HOH A 166 466 82 HOH HOH . G 5 HOH A 167 467 72 HOH HOH . G 5 HOH A 168 468 109 HOH HOH . G 5 HOH A 169 469 144 HOH HOH . G 5 HOH A 170 470 141 HOH HOH . G 5 HOH A 171 471 98 HOH HOH . G 5 HOH A 172 472 91 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O05 V1L . . . E 4 12.017 -13.746 -16.813 0.98 16.05 ? O05 V1L 204 A 1 HETATM 2 C C04 V1L . . . E 4 10.837 -14.003 -16.982 0.98 16.07 ? C04 V1L 204 A 1 HETATM 3 C C06 V1L . . . E 4 9.776 -13.106 -16.422 0.98 18.75 ? C06 V1L 204 A 1 HETATM 4 C C07 V1L . . . E 4 8.395 -13.326 -17.028 0.98 21.43 ? C07 V1L 204 A 1 HETATM 5 C C08 V1L . . . E 4 8.092 -14.799 -17.107 0.98 22.74 ? C08 V1L 204 A 1 HETATM 6 C C02 V1L . . . E 4 9.102 -15.5 -17.961 0.98 20.56 ? C02 V1L 204 A 1 HETATM 7 N N03 V1L . . . E 4 10.457 -15.076 -17.65 0.98 17.77 ? N03 V1L 204 A 1 HETATM 8 H H1 V1L . . . E 4 9.756 -13.247 -15.342 0.98 22.51 ? H1 V1L 204 A 1 HETATM 9 H H2 V1L . . . E 4 10.103 -12.077 -16.56 0.98 22.51 ? H2 V1L 204 A 1 HETATM 10 H H3 V1L . . . E 4 7.64 -12.807 -16.44 0.98 25.71 ? H3 V1L 204 A 1 HETATM 11 H H4 V1L . . . E 4 8.34 -12.867 -18.014 0.98 25.71 ? H4 V1L 204 A 1 HETATM 12 H H5 V1L . . . E 4 8.069 -15.229 -16.107 0.98 27.29 ? H5 V1L 204 A 1 HETATM 13 H H6 V1L . . . E 4 7.086 -14.953 -17.495 0.98 27.29 ? H6 V1L 204 A 1 HETATM 14 H H7 V1L . . . E 4 8.9 -15.318 -19.016 0.98 24.67 ? H7 V1L 204 A 1 HETATM 15 H H8 V1L . . . E 4 9.023 -16.579 -17.836 0.98 24.67 ? H8 V1L 204 A 1 HETATM 16 H H9 V1L . . . E 4 11.182 -15.695 -17.999 0.98 21.32 ? H9 V1L 204 A 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 14 _model_server_stats.query_time_ms 259 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 16 #