data_6TX9 # _model_server_result.job_id o4BbxiLX6lHsuz_hwnCsSA _model_server_result.datetime_utc '2024-11-30 05:37:33' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6tx9 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":201}' # _entry.id 6TX9 # _exptl.entry_id 6TX9 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 100.076 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description imidazolidine-2,4-dione _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6TX9 _cell.length_a 42.233 _cell.length_b 54.418 _cell.length_c 56.73 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6TX9 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OE2 GLU 33 A GLU 45 1_555 C NA NA . A NA 202 4_545 ? ? ? ? ? ? ? ? ? ? ? ? 2.681 ? metalc ? metalc2 A O THR 34 A THR 46 1_555 C NA NA . A NA 202 4_545 ? ? ? ? ? ? ? ? ? ? ? ? 2.749 ? metalc ? metalc3 A O THR 84 A THR 96 1_555 D NA NA . A NA 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.709 ? metalc ? metalc4 A OE1 GLU 89 A GLU 101 1_555 D NA NA . A NA 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.691 ? metalc ? metalc5 C NA NA . A NA 202 1_555 E O HOH . A HOH 311 4_445 ? ? ? ? ? ? ? ? ? ? ? ? 2.776 ? metalc ? metalc6 C NA NA . A NA 202 1_555 E O HOH . A HOH 366 4_445 ? ? ? ? ? ? ? ? ? ? ? ? 2.732 ? metalc ? metalc7 C NA NA . A NA 202 1_555 E O HOH . A HOH 412 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.864 ? metalc ? metalc8 D NA NA . A NA 203 1_555 E O HOH . A HOH 457 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.602 ? # _chem_comp.formula 'C3 H4 N2 O2' _chem_comp.formula_weight 100.076 _chem_comp.id HYN _chem_comp.mon_nstd_flag . _chem_comp.name imidazolidine-2,4-dione _chem_comp.type non-polymer _chem_comp.pdbx_synonyms Hydantoin # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O C HYN doub 152 n n C C1 HYN sing 153 n n C N1 HYN sing 154 n n C1 N HYN sing 155 n n N C2 HYN sing 156 n n N1 C2 HYN sing 157 n n C2 O1 HYN doub 158 n n C1 H1 HYN sing 159 n n C1 H1A HYN sing 160 n n N HN HYN sing 161 n n N1 HN1 HYN sing 162 n n # _atom_sites.entry_id 6TX9 _atom_sites.fract_transf_matrix[1][1] 0.023678 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.018376 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.017627 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 HYN A 1 201 201 HYN LIG . C 3 NA A 1 202 1 NA NA . D 3 NA A 1 203 2 NA NA . E 4 HOH A 1 301 120 HOH HOH . E 4 HOH A 2 302 11 HOH HOH . E 4 HOH A 3 303 183 HOH HOH . E 4 HOH A 4 304 34 HOH HOH . E 4 HOH A 5 305 172 HOH HOH . E 4 HOH A 6 306 45 HOH HOH . E 4 HOH A 7 307 53 HOH HOH . E 4 HOH A 8 308 73 HOH HOH . E 4 HOH A 9 309 64 HOH HOH . E 4 HOH A 10 310 89 HOH HOH . E 4 HOH A 11 311 7 HOH HOH . E 4 HOH A 12 312 46 HOH HOH . E 4 HOH A 13 313 72 HOH HOH . E 4 HOH A 14 314 74 HOH HOH . E 4 HOH A 15 315 32 HOH HOH . E 4 HOH A 16 316 48 HOH HOH . E 4 HOH A 17 317 197 HOH HOH . E 4 HOH A 18 318 83 HOH HOH . E 4 HOH A 19 319 30 HOH HOH . E 4 HOH A 20 320 105 HOH HOH . E 4 HOH A 21 321 38 HOH HOH . E 4 HOH A 22 322 33 HOH HOH . E 4 HOH A 23 323 76 HOH HOH . E 4 HOH A 24 324 122 HOH HOH . E 4 HOH A 25 325 135 HOH HOH . E 4 HOH A 26 326 129 HOH HOH . E 4 HOH A 27 327 159 HOH HOH . E 4 HOH A 28 328 61 HOH HOH . E 4 HOH A 29 329 84 HOH HOH . E 4 HOH A 30 330 18 HOH HOH . E 4 HOH A 31 331 205 HOH HOH . E 4 HOH A 32 332 88 HOH HOH . E 4 HOH A 33 333 16 HOH HOH . E 4 HOH A 34 334 119 HOH HOH . E 4 HOH A 35 335 69 HOH HOH . E 4 HOH A 36 336 192 HOH HOH . E 4 HOH A 37 337 176 HOH HOH . E 4 HOH A 38 338 59 HOH HOH . E 4 HOH A 39 339 6 HOH HOH . E 4 HOH A 40 340 41 HOH HOH . E 4 HOH A 41 341 82 HOH HOH . E 4 HOH A 42 342 42 HOH HOH . E 4 HOH A 43 343 133 HOH HOH . E 4 HOH A 44 344 56 HOH HOH . E 4 HOH A 45 345 137 HOH HOH . E 4 HOH A 46 346 1 HOH HOH . E 4 HOH A 47 347 106 HOH HOH . E 4 HOH A 48 348 55 HOH HOH . E 4 HOH A 49 349 128 HOH HOH . E 4 HOH A 50 350 146 HOH HOH . E 4 HOH A 51 351 103 HOH HOH . E 4 HOH A 52 352 160 HOH HOH . E 4 HOH A 53 353 151 HOH HOH . E 4 HOH A 54 354 4 HOH HOH . E 4 HOH A 55 355 81 HOH HOH . E 4 HOH A 56 356 60 HOH HOH . E 4 HOH A 57 357 44 HOH HOH . E 4 HOH A 58 358 31 HOH HOH . E 4 HOH A 59 359 21 HOH HOH . E 4 HOH A 60 360 14 HOH HOH . E 4 HOH A 61 361 177 HOH HOH . E 4 HOH A 62 362 13 HOH HOH . E 4 HOH A 63 363 28 HOH HOH . E 4 HOH A 64 364 39 HOH HOH . E 4 HOH A 65 365 70 HOH HOH . E 4 HOH A 66 366 193 HOH HOH . E 4 HOH A 67 367 54 HOH HOH . E 4 HOH A 68 368 86 HOH HOH . E 4 HOH A 69 369 15 HOH HOH . E 4 HOH A 70 370 126 HOH HOH . E 4 HOH A 71 371 20 HOH HOH . E 4 HOH A 72 372 25 HOH HOH . E 4 HOH A 73 373 87 HOH HOH . E 4 HOH A 74 374 36 HOH HOH . E 4 HOH A 75 375 138 HOH HOH . E 4 HOH A 76 376 185 HOH HOH . E 4 HOH A 77 377 22 HOH HOH . E 4 HOH A 78 378 150 HOH HOH . E 4 HOH A 79 379 52 HOH HOH . E 4 HOH A 80 380 8 HOH HOH . E 4 HOH A 81 381 78 HOH HOH . E 4 HOH A 82 382 175 HOH HOH . E 4 HOH A 83 383 157 HOH HOH . E 4 HOH A 84 384 57 HOH HOH . E 4 HOH A 85 385 179 HOH HOH . E 4 HOH A 86 386 5 HOH HOH . E 4 HOH A 87 387 12 HOH HOH . E 4 HOH A 88 388 51 HOH HOH . E 4 HOH A 89 389 142 HOH HOH . E 4 HOH A 90 390 168 HOH HOH . E 4 HOH A 91 391 3 HOH HOH . E 4 HOH A 92 392 173 HOH HOH . E 4 HOH A 93 393 118 HOH HOH . E 4 HOH A 94 394 125 HOH HOH . E 4 HOH A 95 395 117 HOH HOH . E 4 HOH A 96 396 188 HOH HOH . E 4 HOH A 97 397 2 HOH HOH . E 4 HOH A 98 398 156 HOH HOH . E 4 HOH A 99 399 68 HOH HOH . E 4 HOH A 100 400 17 HOH HOH . E 4 HOH A 101 401 143 HOH HOH . E 4 HOH A 102 402 71 HOH HOH . E 4 HOH A 103 403 201 HOH HOH . E 4 HOH A 104 404 9 HOH HOH . E 4 HOH A 105 405 124 HOH HOH . E 4 HOH A 106 406 27 HOH HOH . E 4 HOH A 107 407 58 HOH HOH . E 4 HOH A 108 408 184 HOH HOH . E 4 HOH A 109 409 40 HOH HOH . E 4 HOH A 110 410 75 HOH HOH . E 4 HOH A 111 411 65 HOH HOH . E 4 HOH A 112 412 127 HOH HOH . E 4 HOH A 113 413 116 HOH HOH . E 4 HOH A 114 414 29 HOH HOH . E 4 HOH A 115 415 104 HOH HOH . E 4 HOH A 116 416 170 HOH HOH . E 4 HOH A 117 417 67 HOH HOH . E 4 HOH A 118 418 169 HOH HOH . E 4 HOH A 119 419 19 HOH HOH . E 4 HOH A 120 420 79 HOH HOH . E 4 HOH A 121 421 50 HOH HOH . E 4 HOH A 122 422 26 HOH HOH . E 4 HOH A 123 423 174 HOH HOH . E 4 HOH A 124 424 23 HOH HOH . E 4 HOH A 125 425 164 HOH HOH . E 4 HOH A 126 426 24 HOH HOH . E 4 HOH A 127 427 131 HOH HOH . E 4 HOH A 128 428 35 HOH HOH . E 4 HOH A 129 429 10 HOH HOH . E 4 HOH A 130 430 62 HOH HOH . E 4 HOH A 131 431 43 HOH HOH . E 4 HOH A 132 432 37 HOH HOH . E 4 HOH A 133 433 85 HOH HOH . E 4 HOH A 134 434 155 HOH HOH . E 4 HOH A 135 435 63 HOH HOH . E 4 HOH A 136 436 66 HOH HOH . E 4 HOH A 137 437 47 HOH HOH . E 4 HOH A 138 438 77 HOH HOH . E 4 HOH A 139 439 204 HOH HOH . E 4 HOH A 140 440 136 HOH HOH . E 4 HOH A 141 441 134 HOH HOH . E 4 HOH A 142 442 162 HOH HOH . E 4 HOH A 143 443 165 HOH HOH . E 4 HOH A 144 444 99 HOH HOH . E 4 HOH A 145 445 114 HOH HOH . E 4 HOH A 146 446 145 HOH HOH . E 4 HOH A 147 447 130 HOH HOH . E 4 HOH A 148 448 161 HOH HOH . E 4 HOH A 149 449 80 HOH HOH . E 4 HOH A 150 450 163 HOH HOH . E 4 HOH A 151 451 190 HOH HOH . E 4 HOH A 152 452 182 HOH HOH . E 4 HOH A 153 453 166 HOH HOH . E 4 HOH A 154 454 158 HOH HOH . E 4 HOH A 155 455 189 HOH HOH . E 4 HOH A 156 456 49 HOH HOH . E 4 HOH A 157 457 98 HOH HOH . E 4 HOH A 158 458 148 HOH HOH . E 4 HOH A 159 459 167 HOH HOH . E 4 HOH A 160 460 178 HOH HOH . E 4 HOH A 161 461 152 HOH HOH . E 4 HOH A 162 462 95 HOH HOH . E 4 HOH A 163 463 154 HOH HOH . E 4 HOH A 164 464 92 HOH HOH . E 4 HOH A 165 465 198 HOH HOH . E 4 HOH A 166 466 203 HOH HOH . E 4 HOH A 167 467 101 HOH HOH . E 4 HOH A 168 468 121 HOH HOH . E 4 HOH A 169 469 187 HOH HOH . E 4 HOH A 170 470 194 HOH HOH . E 4 HOH A 171 471 100 HOH HOH . E 4 HOH A 172 472 141 HOH HOH . E 4 HOH A 173 473 140 HOH HOH . E 4 HOH A 174 474 196 HOH HOH . E 4 HOH A 175 475 139 HOH HOH . E 4 HOH A 176 476 147 HOH HOH . E 4 HOH A 177 477 109 HOH HOH . E 4 HOH A 178 478 91 HOH HOH . E 4 HOH A 179 479 112 HOH HOH . E 4 HOH A 180 480 199 HOH HOH . E 4 HOH A 181 481 102 HOH HOH . E 4 HOH A 182 482 93 HOH HOH . E 4 HOH A 183 483 132 HOH HOH . E 4 HOH A 184 484 113 HOH HOH . E 4 HOH A 185 485 191 HOH HOH . E 4 HOH A 186 486 115 HOH HOH . E 4 HOH A 187 487 149 HOH HOH . E 4 HOH A 188 488 97 HOH HOH . E 4 HOH A 189 489 110 HOH HOH . E 4 HOH A 190 490 107 HOH HOH . E 4 HOH A 191 491 108 HOH HOH . E 4 HOH A 192 492 202 HOH HOH . E 4 HOH A 193 493 144 HOH HOH . E 4 HOH A 194 494 94 HOH HOH . E 4 HOH A 195 495 96 HOH HOH . E 4 HOH A 196 496 123 HOH HOH . E 4 HOH A 197 497 111 HOH HOH . E 4 HOH A 198 498 186 HOH HOH . E 4 HOH A 199 499 171 HOH HOH . E 4 HOH A 200 500 90 HOH HOH . E 4 HOH A 201 501 153 HOH HOH . E 4 HOH A 202 502 180 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O HYN . . . B 2 11.846 -13.874 -16.607 0.63 18.56 ? O HYN 201 A 1 HETATM 2 C C HYN . . . B 2 10.79 -14.19 -17.123 0.63 28.05 ? C HYN 201 A 1 HETATM 3 C C1 HYN . . . B 2 9.406 -13.538 -16.913 0.63 28.19 ? C1 HYN 201 A 1 HETATM 4 N N HYN . . . B 2 8.606 -14.364 -17.794 0.63 28.95 ? N HYN 201 A 1 HETATM 5 N N1 HYN . . . B 2 10.613 -15.185 -18.045 0.63 28.3 ? N1 HYN 201 A 1 HETATM 6 C C2 HYN . . . B 2 9.301 -15.293 -18.454 0.63 31.76 ? C2 HYN 201 A 1 HETATM 7 O O1 HYN . . . B 2 8.859 -16.078 -19.287 0.63 32.05 ? O1 HYN 201 A 1 # _model_server_stats.io_time_ms 66 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 302 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 7 #