data_6TXF # _model_server_result.job_id ua1WM2Ieeq_2N1-ey3KAiw _model_server_result.datetime_utc '2024-11-17 12:45:39' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6txf # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":703}' # _entry.id 6TXF # _exptl.entry_id 6TXF _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 54.938 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MANGANESE (II) ION' _entity.pdbx_number_of_molecules 6 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6TXF _cell.length_a 104.978 _cell.length_b 104.978 _cell.length_c 195.516 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6TXF _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 7_555 y,x,-z 0 1 0 1 0 0 0 0 -1 0 0 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 E N N ? 3 F N N ? 3 L N N ? 3 M N N ? 3 N N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 61 A HIS 167 1_555 C FE FE . A FE 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.276 ? metalc ? metalc2 A NE2 HIS 100 A HIS 206 1_555 C FE FE . A FE 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.136 ? metalc ? metalc3 A OD2 ASP 101 A ASP 207 1_555 C FE FE . A FE 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.05 ? metalc ? metalc4 A OD1 ASP 101 A ASP 207 1_555 D MN MN . A MN 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.045 ? metalc ? metalc5 A NE2 HIS 127 A HIS 233 1_555 D MN MN . A MN 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.166 ? metalc ? metalc6 A OD1 ASP 205 A ASP 311 1_555 C FE FE . A FE 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.072 ? metalc ? metalc7 C FE FE . A FE 701 1_555 G O1A DZ4 . A DZ4 705 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.203 ? metalc ? metalc8 C FE FE . A FE 701 1_555 Q O HOH . A HOH 814 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.014 ? metalc ? metalc9 D MN MN . A MN 702 1_555 G O2A DZ4 . A DZ4 705 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.117 ? metalc ? metalc10 D MN MN . A MN 702 1_555 Q O HOH . A HOH 814 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.259 ? metalc ? metalc11 D MN MN . A MN 702 1_555 Q O HOH . A HOH 821 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.325 ? metalc ? metalc12 D MN MN . A MN 702 1_555 Q O HOH . A HOH 822 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? metalc ? metalc13 E MN MN . A MN 703 1_555 G O1B DZ4 . A DZ4 705 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.207 ? metalc ? metalc14 E MN MN . A MN 703 1_555 G O1G DZ4 . A DZ4 705 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.944 ? metalc ? metalc15 E MN MN . A MN 703 1_555 Q O HOH . A HOH 809 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.328 ? metalc ? metalc16 E MN MN . A MN 703 1_555 Q O HOH . A HOH 826 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.162 ? metalc ? metalc17 E MN MN . A MN 703 1_555 Q O HOH . A HOH 827 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.258 ? metalc ? metalc18 E MN MN . A MN 703 1_555 Q O HOH . A HOH 833 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? metalc ? metalc19 F MN MN . A MN 704 1_555 H O12 CZF . A CZF 706 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.284 ? metalc ? metalc20 F MN MN . A MN 704 1_555 H O9 CZF . A CZF 706 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.252 ? metalc ? metalc21 F MN MN . A MN 704 1_555 H O14 CZF . A CZF 706 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.189 ? metalc ? metalc22 F MN MN . A MN 704 1_555 Q O HOH . A HOH 848 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.255 ? metalc ? metalc23 F MN MN . A MN 704 1_555 J O1B DZ4 . B DZ4 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.128 ? metalc ? metalc24 F MN MN . A MN 704 1_555 J O2G DZ4 . B DZ4 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.002 ? metalc ? metalc25 I O1B DZ4 . A DZ4 707 1_555 N MN MN . B MN 705 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.328 ? metalc ? metalc26 I O2G DZ4 . A DZ4 707 1_555 N MN MN . B MN 705 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.854 ? metalc ? metalc27 Q O HOH . A HOH 847 1_555 N MN MN . B MN 705 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.432 ? metalc ? metalc28 B NE2 HIS 61 B HIS 167 1_555 K FE FE . B FE 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.214 ? metalc ? metalc29 B NE2 HIS 100 B HIS 206 1_555 K FE FE . B FE 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.058 ? metalc ? metalc30 B OD2 ASP 101 B ASP 207 1_555 K FE FE . B FE 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.051 ? metalc ? metalc31 B OD1 ASP 101 B ASP 207 1_555 L MN MN . B MN 703 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.237 ? metalc ? metalc32 B NE2 HIS 127 B HIS 233 1_555 L MN MN . B MN 703 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.331 ? metalc ? metalc33 B OD1 ASP 205 B ASP 311 1_555 K FE FE . B FE 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.994 ? metalc ? metalc34 K FE FE . B FE 702 1_555 O O1A DZ4 . B DZ4 706 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.207 ? metalc ? metalc35 K FE FE . B FE 702 1_555 R O HOH . B HOH 824 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.713 ? metalc ? metalc36 L MN MN . B MN 703 1_555 O O2A DZ4 . B DZ4 706 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.19 ? metalc ? metalc37 L MN MN . B MN 703 1_555 R O HOH . B HOH 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.324 ? metalc ? metalc38 L MN MN . B MN 703 1_555 R O HOH . B HOH 812 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.615 ? metalc ? metalc39 L MN MN . B MN 703 1_555 R O HOH . B HOH 824 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.885 ? metalc ? metalc40 M MN MN . B MN 704 1_555 O O1B DZ4 . B DZ4 706 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.106 ? metalc ? metalc41 M MN MN . B MN 704 1_555 O O1G DZ4 . B DZ4 706 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.123 ? metalc ? metalc42 M MN MN . B MN 704 1_555 R O HOH . B HOH 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.062 ? metalc ? metalc43 M MN MN . B MN 704 1_555 R O HOH . B HOH 810 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.249 ? metalc ? metalc44 M MN MN . B MN 704 1_555 R O HOH . B HOH 822 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.024 ? metalc ? metalc45 M MN MN . B MN 704 1_555 R O HOH . B HOH 829 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.216 ? metalc ? metalc46 N MN MN . B MN 705 1_555 P O9 CZF . B CZF 707 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.41 ? metalc ? metalc47 N MN MN . B MN 705 1_555 P O12 CZF . B CZF 707 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.079 ? metalc ? metalc48 N MN MN . B MN 705 1_555 P O14 CZF . B CZF 707 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.047 ? # _chem_comp.formula 'Mn 2' _chem_comp.formula_weight 54.938 _chem_comp.id MN _chem_comp.mon_nstd_flag . _chem_comp.name 'MANGANESE (II) ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 6TXF _atom_sites.fract_transf_matrix[1][1] 0.009526 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009526 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005115 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 FE A 1 701 701 FE FE . D 3 MN A 1 702 702 MN MN . E 3 MN A 1 703 703 MN MN . F 3 MN A 1 704 704 MN MN . G 4 DZ4 A 1 705 801 DZ4 DAP . H 5 CZF A 1 706 802 CZF XTP . I 4 DZ4 A 1 707 803 DZ4 DAP . J 4 DZ4 B 1 701 803 DZ4 DAP . K 2 FE B 1 702 701 FE FE . L 3 MN B 1 703 702 MN MN . M 3 MN B 1 704 703 MN MN . N 3 MN B 1 705 704 MN MN . O 4 DZ4 B 1 706 801 DZ4 DAP . P 5 CZF B 1 707 802 CZF XTP . Q 6 HOH A 1 801 43 HOH HOH . Q 6 HOH A 2 802 73 HOH HOH . Q 6 HOH A 3 803 68 HOH HOH . Q 6 HOH A 4 804 27 HOH HOH . Q 6 HOH A 5 805 31 HOH HOH . Q 6 HOH A 6 806 40 HOH HOH . Q 6 HOH A 7 807 84 HOH HOH . Q 6 HOH A 8 808 34 HOH HOH . Q 6 HOH A 9 809 7 HOH HOH . Q 6 HOH A 10 810 41 HOH HOH . Q 6 HOH A 11 811 33 HOH HOH . Q 6 HOH A 12 812 51 HOH HOH . Q 6 HOH A 13 813 39 HOH HOH . Q 6 HOH A 14 814 901 HOH HOH . Q 6 HOH A 15 815 36 HOH HOH . Q 6 HOH A 16 816 74 HOH HOH . Q 6 HOH A 17 817 49 HOH HOH . Q 6 HOH A 18 818 29 HOH HOH . Q 6 HOH A 19 819 62 HOH HOH . Q 6 HOH A 20 820 80 HOH HOH . Q 6 HOH A 21 821 3 HOH HOH . Q 6 HOH A 22 822 2 HOH HOH . Q 6 HOH A 23 823 19 HOH HOH . Q 6 HOH A 24 824 20 HOH HOH . Q 6 HOH A 25 825 52 HOH HOH . Q 6 HOH A 26 826 5 HOH HOH . Q 6 HOH A 27 827 8 HOH HOH . Q 6 HOH A 28 828 18 HOH HOH . Q 6 HOH A 29 829 38 HOH HOH . Q 6 HOH A 30 830 37 HOH HOH . Q 6 HOH A 31 831 17 HOH HOH . Q 6 HOH A 32 832 56 HOH HOH . Q 6 HOH A 33 833 6 HOH HOH . Q 6 HOH A 34 834 60 HOH HOH . Q 6 HOH A 35 835 32 HOH HOH . Q 6 HOH A 36 836 50 HOH HOH . Q 6 HOH A 37 837 4 HOH HOH . Q 6 HOH A 38 838 59 HOH HOH . Q 6 HOH A 39 839 53 HOH HOH . Q 6 HOH A 40 840 58 HOH HOH . Q 6 HOH A 41 841 61 HOH HOH . Q 6 HOH A 42 842 30 HOH HOH . Q 6 HOH A 43 843 67 HOH HOH . Q 6 HOH A 44 844 86 HOH HOH . Q 6 HOH A 45 845 28 HOH HOH . Q 6 HOH A 46 846 72 HOH HOH . Q 6 HOH A 47 847 9 HOH HOH . Q 6 HOH A 48 848 1 HOH HOH . Q 6 HOH A 49 849 42 HOH HOH . Q 6 HOH A 50 850 44 HOH HOH . Q 6 HOH A 51 851 76 HOH HOH . R 6 HOH B 1 801 10 HOH HOH . R 6 HOH B 2 802 13 HOH HOH . R 6 HOH B 3 803 69 HOH HOH . R 6 HOH B 4 804 79 HOH HOH . R 6 HOH B 5 805 81 HOH HOH . R 6 HOH B 6 806 83 HOH HOH . R 6 HOH B 7 807 71 HOH HOH . R 6 HOH B 8 808 65 HOH HOH . R 6 HOH B 9 809 88 HOH HOH . R 6 HOH B 10 810 12 HOH HOH . R 6 HOH B 11 811 35 HOH HOH . R 6 HOH B 12 812 11 HOH HOH . R 6 HOH B 13 813 77 HOH HOH . R 6 HOH B 14 814 21 HOH HOH . R 6 HOH B 15 815 78 HOH HOH . R 6 HOH B 16 816 47 HOH HOH . R 6 HOH B 17 817 26 HOH HOH . R 6 HOH B 18 818 23 HOH HOH . R 6 HOH B 19 819 55 HOH HOH . R 6 HOH B 20 820 82 HOH HOH . R 6 HOH B 21 821 63 HOH HOH . R 6 HOH B 22 822 15 HOH HOH . R 6 HOH B 23 823 22 HOH HOH . R 6 HOH B 24 824 901 HOH HOH . R 6 HOH B 25 825 70 HOH HOH . R 6 HOH B 26 826 24 HOH HOH . R 6 HOH B 27 827 45 HOH HOH . R 6 HOH B 28 828 66 HOH HOH . R 6 HOH B 29 829 14 HOH HOH . R 6 HOH B 30 830 57 HOH HOH . R 6 HOH B 31 831 46 HOH HOH . R 6 HOH B 32 832 48 HOH HOH . R 6 HOH B 33 833 16 HOH HOH . R 6 HOH B 34 834 85 HOH HOH . R 6 HOH B 35 835 54 HOH HOH . R 6 HOH B 36 836 64 HOH HOH . R 6 HOH B 37 837 25 HOH HOH . R 6 HOH B 38 838 87 HOH HOH . R 6 HOH B 39 839 75 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol MN _atom_site.label_atom_id MN _atom_site.label_comp_id MN _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id E _atom_site.label_entity_id 3 _atom_site.Cartn_x 24.431 _atom_site.Cartn_y -9.332 _atom_site.Cartn_z -0.47 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 31.4 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id MN _atom_site.auth_comp_id MN _atom_site.auth_seq_id 703 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 25 _model_server_stats.parse_time_ms 16 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 345 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 1 #