data_6TY8 # _model_server_result.job_id SzFQqdMXkkDDyEF1IKqRQg _model_server_result.datetime_utc '2024-10-19 12:21:07' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6ty8 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":1301}' # _entry.id 6TY8 # _exptl.entry_id 6TY8 _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 787.441 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "P1-7-METHYLGUANOSINE-P3-ADENOSINE-5',5'-TRIPHOSPHATE" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6TY8 _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 6TY8 _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C21 H30 N10 O17 P3 1' _chem_comp.formula_weight 787.441 _chem_comp.id GTA _chem_comp.mon_nstd_flag . _chem_comp.name "P1-7-METHYLGUANOSINE-P3-ADENOSINE-5',5'-TRIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 7-METHYL-GPPPA # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N2 C2 GTA sing 129 n n N2 HN21 GTA sing 130 n n N2 HN22 GTA sing 131 n n O6 C6 GTA doub 132 n n C6 C5 GTA sing 133 n n C6 N1 GTA sing 134 n n C5 N7 GTA sing 135 n y C5 C4 GTA doub 136 n y N7 C7 GTA sing 137 n n N7 C8 GTA doub 138 n y C7 H71 GTA sing 139 n n C7 H72 GTA sing 140 n n C7 H73 GTA sing 141 n n C8 N9 GTA sing 142 n y C8 H8 GTA sing 143 n n N9 C4 GTA sing 144 n y N9 C1A GTA sing 145 n n C4 N3 GTA sing 146 n n N3 C2 GTA doub 147 n n C2 N1 GTA sing 148 n n N1 HN1 GTA sing 149 n n O3A C3A GTA sing 150 n n O3A HO3A GTA sing 151 n n C1A C2A GTA sing 152 n n C1A O4A GTA sing 153 n n C1A H1A GTA sing 154 n n C2A C3A GTA sing 155 n n C2A O2A GTA sing 156 n n C2A H2A GTA sing 157 n n C3A C4A GTA sing 158 n n C3A H3A GTA sing 159 n n C4A C5A GTA sing 160 n n C4A O4A GTA sing 161 n n C4A H4A GTA sing 162 n n C5A O15 GTA sing 163 n n C5A H5A1 GTA sing 164 n n C5A H5A2 GTA sing 165 n n O2A HO2A GTA sing 166 n n P1 O11 GTA doub 167 n n P1 O12 GTA sing 168 n n P1 O13 GTA sing 169 n n P1 O15 GTA sing 170 n n O12 H122 GTA sing 171 n n O13 P2 GTA sing 172 n n P2 O22 GTA sing 173 n n P2 O21 GTA doub 174 n n P2 O23 GTA sing 175 n n O22 H222 GTA sing 176 n n O23 P3 GTA sing 177 n n P3 O32 GTA sing 178 n n P3 O31 GTA doub 179 n n P3 O33 GTA sing 180 n n O32 H322 GTA sing 181 n n O33 C5B GTA sing 182 n n C5B C4B GTA sing 183 n n C5B H5B1 GTA sing 184 n n C5B H5B2 GTA sing 185 n n C4B O4B GTA sing 186 n n C4B C3B GTA sing 187 n n C4B H4B GTA sing 188 n n O4B C1B GTA sing 189 n n C3B O3B GTA sing 190 n n C3B C2B GTA sing 191 n n C3B H3B GTA sing 192 n n O3B HO3B GTA sing 193 n n C2B O2B GTA sing 194 n n C2B C1B GTA sing 195 n n C2B H2B GTA sing 196 n n O2B HO2B GTA sing 197 n n C1B N9C GTA sing 198 n n C1B H1B GTA sing 199 n n N9C C8C GTA sing 200 n y N9C C4C GTA sing 201 n y C8C N7C GTA doub 202 n y C8C H8C GTA sing 203 n n N7C C5C GTA sing 204 n y C5C C6C GTA doub 205 n y C5C C4C GTA sing 206 n y C6C N6C GTA sing 207 n n C6C N1C GTA sing 208 n y N6C HN61 GTA sing 209 n n N6C HN62 GTA sing 210 n n N1C C2C GTA doub 211 n y C2C N3C GTA sing 212 n y C2C H2C GTA sing 213 n n N3C C4C GTA doub 214 n y # _atom_sites.entry_id 6TY8 _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # _pdbx_nonpoly_scheme.asym_id C _pdbx_nonpoly_scheme.entity_id 3 _pdbx_nonpoly_scheme.mon_id GTA _pdbx_nonpoly_scheme.pdb_strand_id A _pdbx_nonpoly_scheme.ndb_seq_num 1 _pdbx_nonpoly_scheme.pdb_seq_num 1301 _pdbx_nonpoly_scheme.auth_seq_num 1225 _pdbx_nonpoly_scheme.pdb_mon_id GTA _pdbx_nonpoly_scheme.auth_mon_id GTA _pdbx_nonpoly_scheme.pdb_ins_code . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N2 GTA . . . C 3 141.622 95.987 76.162 1 70.02 ? N2 GTA 1301 A 1 HETATM 2 O O6 GTA . . . C 3 141.025 97.61 71.717 1 70.02 ? O6 GTA 1301 A 1 HETATM 3 C C6 GTA . . . C 3 141.701 97.557 72.687 1 70.02 ? C6 GTA 1301 A 1 HETATM 4 C C5 GTA . . . C 3 143.057 98.28 72.734 1 70.02 ? C5 GTA 1301 A 1 HETATM 5 N N7 GTA . . . C 3 143.715 99.034 71.846 1 70.02 ? N7 GTA 1301 A 1 HETATM 6 C C7 GTA . . . C 3 143.33 99.414 70.499 1 70.02 ? C7 GTA 1301 A 1 HETATM 7 C C8 GTA . . . C 3 144.881 99.434 72.399 1 70.02 ? C8 GTA 1301 A 1 HETATM 8 N N9 GTA . . . C 3 144.904 98.905 73.629 1 70.02 ? N9 GTA 1301 A 1 HETATM 9 C C4 GTA . . . C 3 143.815 98.202 73.865 1 70.02 ? C4 GTA 1301 A 1 HETATM 10 N N3 GTA . . . C 3 143.353 97.429 75.049 1 70.02 ? N3 GTA 1301 A 1 HETATM 11 C C2 GTA . . . C 3 142.068 96.739 75.005 1 70.02 ? C2 GTA 1301 A 1 HETATM 12 N N1 GTA . . . C 3 141.251 96.81 73.82 1 70.02 ? N1 GTA 1301 A 1 HETATM 13 O O3A GTA . . . C 3 149.432 98.465 75.215 1 70.02 ? O3A GTA 1301 A 1 HETATM 14 C C1A GTA . . . C 3 146.093 99.217 74.427 1 70.02 ? C1A GTA 1301 A 1 HETATM 15 C C2A GTA . . . C 3 147.228 98.155 74.179 1 70.02 ? C2A GTA 1301 A 1 HETATM 16 C C3A GTA . . . C 3 148.512 98.945 74.142 1 70.02 ? C3A GTA 1301 A 1 HETATM 17 C C4A GTA . . . C 3 148.172 100.23 74.354 1 70.02 ? C4A GTA 1301 A 1 HETATM 18 C C5A GTA . . . C 3 148.946 101.129 73.435 1 70.02 ? C5A GTA 1301 A 1 HETATM 19 O O4A GTA . . . C 3 146.6 100.345 74.05 1 70.02 ? O4A GTA 1301 A 1 HETATM 20 O O2A GTA . . . C 3 147.256 97.247 75.192 1 70.02 ? O2A GTA 1301 A 1 HETATM 21 P P1 GTA . . . C 3 147.88 101.794 71.127 1 70.02 ? P1 GTA 1301 A 1 HETATM 22 O O11 GTA . . . C 3 147.21 100.468 70.869 1 70.02 ? O11 GTA 1301 A 1 HETATM 23 O O12 GTA . . . C 3 149.232 101.795 70.456 1 70.02 ? O12 GTA 1301 A 1 HETATM 24 O O13 GTA . . . C 3 146.937 103.009 70.529 1 70.02 ? O13 GTA 1301 A 1 HETATM 25 O O15 GTA . . . C 3 148.08 101.992 72.752 1 70.02 ? O15 GTA 1301 A 1 HETATM 26 P P2 GTA . . . C 3 147.23 103.899 69.168 1 70.02 ? P2 GTA 1301 A 1 HETATM 27 O O22 GTA . . . C 3 146.031 103.813 68.253 1 70.02 ? O22 GTA 1301 A 1 HETATM 28 O O21 GTA . . . C 3 148.446 103.385 68.433 1 70.02 ? O21 GTA 1301 A 1 HETATM 29 O O23 GTA . . . C 3 147.485 105.468 69.603 1 70.02 ? O23 GTA 1301 A 1 HETATM 30 P P3 GTA . . . C 3 147.192 106.762 68.628 1 70.02 ? P3 GTA 1301 A 1 HETATM 31 O O32 GTA . . . C 3 145.841 106.607 67.973 1 70.02 ? O32 GTA 1301 A 1 HETATM 32 O O31 GTA . . . C 3 148.259 106.854 67.564 1 70.02 ? O31 GTA 1301 A 1 HETATM 33 O O33 GTA . . . C 3 147.205 108.136 69.533 1 70.02 ? O33 GTA 1301 A 1 HETATM 34 C C5B GTA . . . C 3 147.325 109.367 68.885 1 70.02 ? C5B GTA 1301 A 1 HETATM 35 C C4B GTA . . . C 3 146.631 110.463 69.739 1 70.02 ? C4B GTA 1301 A 1 HETATM 36 O O4B GTA . . . C 3 147.512 111.072 70.492 1 70.02 ? O4B GTA 1301 A 1 HETATM 37 C C3B GTA . . . C 3 146.024 111.543 68.816 1 70.02 ? C3B GTA 1301 A 1 HETATM 38 O O3B GTA . . . C 3 144.752 111.831 69.195 1 70.02 ? O3B GTA 1301 A 1 HETATM 39 C C2B GTA . . . C 3 146.942 112.765 69 1 70.02 ? C2B GTA 1301 A 1 HETATM 40 O O2B GTA . . . C 3 146.177 114.033 68.801 1 70.02 ? O2B GTA 1301 A 1 HETATM 41 C C1B GTA . . . C 3 147.339 112.661 70.237 1 70.02 ? C1B GTA 1301 A 1 HETATM 42 N N9C GTA . . . C 3 148.588 113.352 70.435 1 70.02 ? N9C GTA 1301 A 1 HETATM 43 C C8C GTA . . . C 3 149.431 112.62 71.167 1 70.02 ? C8C GTA 1301 A 1 HETATM 44 N N7C GTA . . . C 3 150.56 113.318 71.314 1 70.02 ? N7C GTA 1301 A 1 HETATM 45 C C5C GTA . . . C 3 150.414 114.485 70.671 1 70.02 ? C5C GTA 1301 A 1 HETATM 46 C C6C GTA . . . C 3 151.26 115.56 70.507 1 70.02 ? C6C GTA 1301 A 1 HETATM 47 N N6C GTA . . . C 3 152.589 116.035 70.85 1 70.02 ? N6C GTA 1301 A 1 HETATM 48 N N1C GTA . . . C 3 150.865 116.614 69.814 1 70.02 ? N1C GTA 1301 A 1 HETATM 49 C C2C GTA . . . C 3 149.627 116.635 69.263 1 70.02 ? C2C GTA 1301 A 1 HETATM 50 N N3C GTA . . . C 3 148.795 115.582 69.422 1 70.02 ? N3C GTA 1301 A 1 HETATM 51 C C4C GTA . . . C 3 149.195 114.508 70.127 1 70.02 ? C4C GTA 1301 A 1 # _model_server_stats.io_time_ms 18 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 280 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 51 #