data_6TYI # _model_server_result.job_id '_IXuzM-GX-uCVWENs6U8Qw' _model_server_result.datetime_utc '2024-10-25 20:22:06' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6tyi # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":301}' # _entry.id 6TYI # _exptl.entry_id 6TYI _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 720.012 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(1S)-2-{[(2-AMINOETHOXY)(HYDROXY)PHOSPHORYL]OXY}-1-[(PALMITOYLOXY)METHYL]ETHYL STEARATE' _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6TYI _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 6TYI _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details heptameric _pdbx_struct_assembly.oligomeric_count 7 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 I N N ? 4 J N N ? 4 K N N # _chem_comp.formula 'C39 H78 N O8 P' _chem_comp.formula_weight 720.012 _chem_comp.id PEV _chem_comp.mon_nstd_flag . _chem_comp.name '(1S)-2-{[(2-AMINOETHOXY)(HYDROXY)PHOSPHORYL]OXY}-1-[(PALMITOYLOXY)METHYL]ETHYL STEARATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms PHOSPHATIDYLETHANOLAMINE;1-PALMITOYL-2-OLEOYL-SN-GLYCERO-3-PHOSPHOETHANOLAMINE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C48 C47 PEV sing 235 n n C48 H481 PEV sing 236 n n C48 H482 PEV sing 237 n n C48 H483 PEV sing 238 n n C47 C46 PEV sing 239 n n C47 H471 PEV sing 240 n n C47 H472 PEV sing 241 n n C46 C45 PEV sing 242 n n C46 H461 PEV sing 243 n n C46 H462 PEV sing 244 n n C45 C44 PEV sing 245 n n C45 H451 PEV sing 246 n n C45 H452 PEV sing 247 n n C44 C43 PEV sing 248 n n C44 H441 PEV sing 249 n n C44 H442 PEV sing 250 n n C43 C42 PEV sing 251 n n C43 H431 PEV sing 252 n n C43 H432 PEV sing 253 n n C42 C41 PEV sing 254 n n C42 H421 PEV sing 255 n n C42 H422 PEV sing 256 n n C41 C40 PEV sing 257 n n C41 H411 PEV sing 258 n n C41 H412 PEV sing 259 n n C40 C39 PEV sing 260 n n C40 H401 PEV sing 261 n n C40 H402 PEV sing 262 n n C39 C38 PEV sing 263 n n C39 H391 PEV sing 264 n n C39 H392 PEV sing 265 n n C38 C37 PEV sing 266 n n C38 H381 PEV sing 267 n n C38 H382 PEV sing 268 n n C37 C36 PEV sing 269 n n C37 H371 PEV sing 270 n n C37 H372 PEV sing 271 n n C36 C35 PEV sing 272 n n C36 H361 PEV sing 273 n n C36 H362 PEV sing 274 n n C35 C34 PEV sing 275 n n C35 H351 PEV sing 276 n n C35 H352 PEV sing 277 n n C34 C33 PEV sing 278 n n C34 H341 PEV sing 279 n n C34 H342 PEV sing 280 n n C33 C32 PEV sing 281 n n C33 H331 PEV sing 282 n n C33 H332 PEV sing 283 n n C32 C31 PEV sing 284 n n C32 H321 PEV sing 285 n n C32 H322 PEV sing 286 n n C31 O31 PEV doub 287 n n C31 O2 PEV sing 288 n n O2 C2 PEV sing 289 n n C2 C1 PEV sing 290 n n C2 C3 PEV sing 291 n n C2 H2 PEV sing 292 n n C1 O3P PEV sing 293 n n C1 H11 PEV sing 294 n n C1 H12 PEV sing 295 n n O3P P PEV sing 296 n n P O1P PEV doub 297 n n P O2P PEV sing 298 n n P O4P PEV sing 299 n n O2P HO2P PEV sing 300 n n O4P C4 PEV sing 301 n n C4 C5 PEV sing 302 n n C4 H41 PEV sing 303 n n C4 H42 PEV sing 304 n n C5 N6 PEV sing 305 n n C5 H51 PEV sing 306 n n C5 H52 PEV sing 307 n n N6 HN61 PEV sing 308 n n N6 HN62 PEV sing 309 n n C3 O3 PEV sing 310 n n C3 H31 PEV sing 311 n n C3 H32 PEV sing 312 n n O3 C11 PEV sing 313 n n C11 O11 PEV doub 314 n n C11 C12 PEV sing 315 n n C12 C13 PEV sing 316 n n C12 H121 PEV sing 317 n n C12 H122 PEV sing 318 n n C13 C14 PEV sing 319 n n C13 H131 PEV sing 320 n n C13 H132 PEV sing 321 n n C14 C15 PEV sing 322 n n C14 H141 PEV sing 323 n n C14 H142 PEV sing 324 n n C15 C16 PEV sing 325 n n C15 H151 PEV sing 326 n n C15 H152 PEV sing 327 n n C16 C17 PEV sing 328 n n C16 H161 PEV sing 329 n n C16 H162 PEV sing 330 n n C17 C18 PEV sing 331 n n C17 H171 PEV sing 332 n n C17 H172 PEV sing 333 n n C18 C19 PEV sing 334 n n C18 H181 PEV sing 335 n n C18 H182 PEV sing 336 n n C19 C20 PEV sing 337 n n C19 H191 PEV sing 338 n n C19 H192 PEV sing 339 n n C20 C21 PEV sing 340 n n C20 H201 PEV sing 341 n n C20 H202 PEV sing 342 n n C21 C22 PEV sing 343 n n C21 H211 PEV sing 344 n n C21 H212 PEV sing 345 n n C22 C23 PEV sing 346 n n C22 H221 PEV sing 347 n n C22 H222 PEV sing 348 n n C23 C24 PEV sing 349 n n C23 H231 PEV sing 350 n n C23 H232 PEV sing 351 n n C24 C25 PEV sing 352 n n C24 H241 PEV sing 353 n n C24 H242 PEV sing 354 n n C25 C26 PEV sing 355 n n C25 H251 PEV sing 356 n n C25 H252 PEV sing 357 n n C26 H261 PEV sing 358 n n C26 H262 PEV sing 359 n n C26 H263 PEV sing 360 n n # _atom_sites.entry_id 6TYI _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code H 3 PGT A 1 301 4 PGT PGT . I 4 PEV B 1 301 3 PEV PEV . J 4 PEV C 1 301 1 PEV PEV . K 4 PEV E 1 301 2 PEV PEV . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C48 PEV . . . I 4 115.357 120.928 86.794 1 42.41 ? C48 PEV 301 B 1 HETATM 2 C C47 PEV . . . I 4 114.831 119.549 86.482 1 42.41 ? C47 PEV 301 B 1 HETATM 3 C C46 PEV . . . I 4 115.879 118.478 86.603 1 42.41 ? C46 PEV 301 B 1 HETATM 4 C C45 PEV . . . I 4 116.417 118.299 87.999 1 42.41 ? C45 PEV 301 B 1 HETATM 5 C C44 PEV . . . I 4 117.639 117.42 88.079 1 42.41 ? C44 PEV 301 B 1 HETATM 6 C C43 PEV . . . I 4 118.096 117.108 89.481 1 42.41 ? C43 PEV 301 B 1 HETATM 7 C C42 PEV . . . I 4 119.408 116.369 89.541 1 42.41 ? C42 PEV 301 B 1 HETATM 8 C C41 PEV . . . I 4 119.727 115.757 90.882 1 42.41 ? C41 PEV 301 B 1 HETATM 9 C C40 PEV . . . I 4 120.997 114.948 90.883 1 42.41 ? C40 PEV 301 B 1 HETATM 10 C C39 PEV . . . I 4 121.15 113.996 92.042 1 42.41 ? C39 PEV 301 B 1 HETATM 11 C C38 PEV . . . I 4 121.559 114.626 93.35 1 42.41 ? C38 PEV 301 B 1 HETATM 12 C C37 PEV . . . I 4 122.349 113.685 94.225 1 42.41 ? C37 PEV 301 B 1 HETATM 13 C C36 PEV . . . I 4 122.778 114.235 95.561 1 42.41 ? C36 PEV 301 B 1 HETATM 14 C C35 PEV . . . I 4 124.074 113.639 96.055 1 42.41 ? C35 PEV 301 B 1 HETATM 15 C C34 PEV . . . I 4 124.271 113.659 97.55 1 42.41 ? C34 PEV 301 B 1 HETATM 16 C C33 PEV . . . I 4 123.467 112.605 98.291 1 42.41 ? C33 PEV 301 B 1 HETATM 17 C C32 PEV . . . I 4 124.105 112.197 99.583 1 42.41 ? C32 PEV 301 B 1 HETATM 18 C C31 PEV . . . I 4 123.425 111.025 100.234 1 42.41 ? C31 PEV 301 B 1 HETATM 19 O O31 PEV . . . I 4 123.137 110.014 99.647 1 42.41 ? O31 PEV 301 B 1 HETATM 20 O O2 PEV . . . I 4 123.191 111.154 101.55 1 42.41 ? O2 PEV 301 B 1 HETATM 21 C C2 PEV . . . I 4 124.048 112.025 102.342 1 42.41 ? C2 PEV 301 B 1 HETATM 22 C C1 PEV . . . I 4 123.867 111.631 103.789 1 42.41 ? C1 PEV 301 B 1 HETATM 23 O O3P PEV . . . I 4 124.32 110.265 103.974 1 42.41 ? O3P PEV 301 B 1 HETATM 24 P P PEV . . . I 4 124.012 109.523 105.363 1 42.41 ? P PEV 301 B 1 HETATM 25 O O1P PEV . . . I 4 124.711 108.193 105.325 1 42.41 ? O1P PEV 301 B 1 HETATM 26 O O2P PEV . . . I 4 124.289 110.484 106.485 1 42.41 ? O2P PEV 301 B 1 HETATM 27 O O4P PEV . . . I 4 122.427 109.277 105.284 1 42.41 ? O4P PEV 301 B 1 HETATM 28 C C4 PEV . . . I 4 121.885 108.509 104.174 1 42.41 ? C4 PEV 301 B 1 HETATM 29 C C5 PEV . . . I 4 120.396 108.329 104.323 1 42.41 ? C5 PEV 301 B 1 HETATM 30 N N6 PEV . . . I 4 119.671 109.589 104.164 1 42.41 ? N6 PEV 301 B 1 HETATM 31 C C3 PEV . . . I 4 123.764 113.49 102.1 1 42.41 ? C3 PEV 301 B 1 HETATM 32 O O3 PEV . . . I 4 124.604 114.252 102.998 1 42.41 ? O3 PEV 301 B 1 HETATM 33 C C11 PEV . . . I 4 124.463 115.578 103.028 1 42.41 ? C11 PEV 301 B 1 HETATM 34 O O11 PEV . . . I 4 125.04 116.277 103.82 1 42.41 ? O11 PEV 301 B 1 HETATM 35 C C12 PEV . . . I 4 123.533 116.101 101.961 1 42.41 ? C12 PEV 301 B 1 HETATM 36 C C13 PEV . . . I 4 123.274 117.57 102.072 1 42.41 ? C13 PEV 301 B 1 HETATM 37 C C14 PEV . . . I 4 122.476 118.112 100.899 1 42.41 ? C14 PEV 301 B 1 HETATM 38 C C15 PEV . . . I 4 123.179 117.989 99.571 1 42.41 ? C15 PEV 301 B 1 HETATM 39 C C16 PEV . . . I 4 122.485 118.693 98.433 1 42.41 ? C16 PEV 301 B 1 HETATM 40 C C17 PEV . . . I 4 123.327 118.82 97.189 1 42.41 ? C17 PEV 301 B 1 HETATM 41 C C18 PEV . . . I 4 122.792 119.8 96.178 1 42.41 ? C18 PEV 301 B 1 HETATM 42 C C19 PEV . . . I 4 121.662 119.281 95.325 1 42.41 ? C19 PEV 301 B 1 HETATM 43 C C20 PEV . . . I 4 120.994 120.354 94.504 1 42.41 ? C20 PEV 301 B 1 HETATM 44 C C21 PEV . . . I 4 120.323 119.867 93.248 1 42.41 ? C21 PEV 301 B 1 HETATM 45 C C22 PEV . . . I 4 119.687 120.973 92.444 1 42.41 ? C22 PEV 301 B 1 HETATM 46 C C23 PEV . . . I 4 119.379 120.613 91.013 1 42.41 ? C23 PEV 301 B 1 HETATM 47 C C24 PEV . . . I 4 118.598 121.671 90.276 1 42.41 ? C24 PEV 301 B 1 HETATM 48 C C25 PEV . . . I 4 119.182 123.053 90.386 1 42.41 ? C25 PEV 301 B 1 HETATM 49 C C26 PEV . . . I 4 118.317 124.127 89.774 1 42.41 ? C26 PEV 301 B 1 # _model_server_stats.io_time_ms 23 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 31 _model_server_stats.query_time_ms 330 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 49 #