data_6TYM # _model_server_result.job_id Nhf7ZDjdJH5LyNXtP0zogw _model_server_result.datetime_utc '2024-10-19 15:51:59' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6tym # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":701}' # _entry.id 6TYM # _exptl.entry_id 6TYM _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6TYM _cell.length_a 63.882 _cell.length_b 91.766 _cell.length_c 96.951 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6TYM _symmetry.cell_setting ? _symmetry.Int_Tables_number 23 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 2 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 208 n n C1 C2 GOL sing 209 n n C1 H11 GOL sing 210 n n C1 H12 GOL sing 211 n n O1 HO1 GOL sing 212 n n C2 O2 GOL sing 213 n n C2 C3 GOL sing 214 n n C2 H2 GOL sing 215 n n O2 HO2 GOL sing 216 n n C3 O3 GOL sing 217 n n C3 H31 GOL sing 218 n n C3 H32 GOL sing 219 n n O3 HO3 GOL sing 220 n n # _atom_sites.entry_id 6TYM _atom_sites.fract_transf_matrix[1][1] 0.015654 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010897 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010314 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 GOL A 1 701 1 GOL GOL . C 3 DMS A 1 702 2 DMS DMS . D 4 08A A 1 703 1 08A 08A . E 4 08A A 1 704 2 08A 08A . F 5 HOH A 1 801 189 HOH HOH . F 5 HOH A 2 802 269 HOH HOH . F 5 HOH A 3 803 289 HOH HOH . F 5 HOH A 4 804 187 HOH HOH . F 5 HOH A 5 805 310 HOH HOH . F 5 HOH A 6 806 84 HOH HOH . F 5 HOH A 7 807 102 HOH HOH . F 5 HOH A 8 808 240 HOH HOH . F 5 HOH A 9 809 244 HOH HOH . F 5 HOH A 10 810 207 HOH HOH . F 5 HOH A 11 811 175 HOH HOH . F 5 HOH A 12 812 296 HOH HOH . F 5 HOH A 13 813 87 HOH HOH . F 5 HOH A 14 814 159 HOH HOH . F 5 HOH A 15 815 198 HOH HOH . F 5 HOH A 16 816 257 HOH HOH . F 5 HOH A 17 817 214 HOH HOH . F 5 HOH A 18 818 131 HOH HOH . F 5 HOH A 19 819 130 HOH HOH . F 5 HOH A 20 820 53 HOH HOH . F 5 HOH A 21 821 108 HOH HOH . F 5 HOH A 22 822 245 HOH HOH . F 5 HOH A 23 823 158 HOH HOH . F 5 HOH A 24 824 136 HOH HOH . F 5 HOH A 25 825 69 HOH HOH . F 5 HOH A 26 826 91 HOH HOH . F 5 HOH A 27 827 7 HOH HOH . F 5 HOH A 28 828 151 HOH HOH . F 5 HOH A 29 829 40 HOH HOH . F 5 HOH A 30 830 195 HOH HOH . F 5 HOH A 31 831 113 HOH HOH . F 5 HOH A 32 832 141 HOH HOH . F 5 HOH A 33 833 266 HOH HOH . F 5 HOH A 34 834 117 HOH HOH . F 5 HOH A 35 835 177 HOH HOH . F 5 HOH A 36 836 54 HOH HOH . F 5 HOH A 37 837 153 HOH HOH . F 5 HOH A 38 838 73 HOH HOH . F 5 HOH A 39 839 15 HOH HOH . F 5 HOH A 40 840 150 HOH HOH . F 5 HOH A 41 841 55 HOH HOH . F 5 HOH A 42 842 49 HOH HOH . F 5 HOH A 43 843 44 HOH HOH . F 5 HOH A 44 844 10 HOH HOH . F 5 HOH A 45 845 30 HOH HOH . F 5 HOH A 46 846 223 HOH HOH . F 5 HOH A 47 847 196 HOH HOH . F 5 HOH A 48 848 166 HOH HOH . F 5 HOH A 49 849 8 HOH HOH . F 5 HOH A 50 850 138 HOH HOH . F 5 HOH A 51 851 83 HOH HOH . F 5 HOH A 52 852 206 HOH HOH . F 5 HOH A 53 853 261 HOH HOH . F 5 HOH A 54 854 132 HOH HOH . F 5 HOH A 55 855 16 HOH HOH . F 5 HOH A 56 856 234 HOH HOH . F 5 HOH A 57 857 232 HOH HOH . F 5 HOH A 58 858 99 HOH HOH . F 5 HOH A 59 859 155 HOH HOH . F 5 HOH A 60 860 148 HOH HOH . F 5 HOH A 61 861 101 HOH HOH . F 5 HOH A 62 862 220 HOH HOH . F 5 HOH A 63 863 286 HOH HOH . F 5 HOH A 64 864 95 HOH HOH . F 5 HOH A 65 865 38 HOH HOH . F 5 HOH A 66 866 62 HOH HOH . F 5 HOH A 67 867 5 HOH HOH . F 5 HOH A 68 868 217 HOH HOH . F 5 HOH A 69 869 273 HOH HOH . F 5 HOH A 70 870 85 HOH HOH . F 5 HOH A 71 871 280 HOH HOH . F 5 HOH A 72 872 237 HOH HOH . F 5 HOH A 73 873 295 HOH HOH . F 5 HOH A 74 874 77 HOH HOH . F 5 HOH A 75 875 204 HOH HOH . F 5 HOH A 76 876 121 HOH HOH . F 5 HOH A 77 877 126 HOH HOH . F 5 HOH A 78 878 275 HOH HOH . F 5 HOH A 79 879 100 HOH HOH . F 5 HOH A 80 880 47 HOH HOH . F 5 HOH A 81 881 264 HOH HOH . F 5 HOH A 82 882 235 HOH HOH . F 5 HOH A 83 883 80 HOH HOH . F 5 HOH A 84 884 46 HOH HOH . F 5 HOH A 85 885 165 HOH HOH . F 5 HOH A 86 886 114 HOH HOH . F 5 HOH A 87 887 12 HOH HOH . F 5 HOH A 88 888 128 HOH HOH . F 5 HOH A 89 889 186 HOH HOH . F 5 HOH A 90 890 74 HOH HOH . F 5 HOH A 91 891 124 HOH HOH . F 5 HOH A 92 892 17 HOH HOH . F 5 HOH A 93 893 202 HOH HOH . F 5 HOH A 94 894 45 HOH HOH . F 5 HOH A 95 895 270 HOH HOH . F 5 HOH A 96 896 224 HOH HOH . F 5 HOH A 97 897 70 HOH HOH . F 5 HOH A 98 898 239 HOH HOH . F 5 HOH A 99 899 56 HOH HOH . F 5 HOH A 100 900 294 HOH HOH . F 5 HOH A 101 901 14 HOH HOH . F 5 HOH A 102 902 129 HOH HOH . F 5 HOH A 103 903 107 HOH HOH . F 5 HOH A 104 904 218 HOH HOH . F 5 HOH A 105 905 13 HOH HOH . F 5 HOH A 106 906 179 HOH HOH . F 5 HOH A 107 907 127 HOH HOH . F 5 HOH A 108 908 4 HOH HOH . F 5 HOH A 109 909 1 HOH HOH . F 5 HOH A 110 910 248 HOH HOH . F 5 HOH A 111 911 41 HOH HOH . F 5 HOH A 112 912 22 HOH HOH . F 5 HOH A 113 913 32 HOH HOH . F 5 HOH A 114 914 180 HOH HOH . F 5 HOH A 115 915 48 HOH HOH . F 5 HOH A 116 916 72 HOH HOH . F 5 HOH A 117 917 26 HOH HOH . F 5 HOH A 118 918 52 HOH HOH . F 5 HOH A 119 919 149 HOH HOH . F 5 HOH A 120 920 9 HOH HOH . F 5 HOH A 121 921 6 HOH HOH . F 5 HOH A 122 922 25 HOH HOH . F 5 HOH A 123 923 143 HOH HOH . F 5 HOH A 124 924 171 HOH HOH . F 5 HOH A 125 925 146 HOH HOH . F 5 HOH A 126 926 42 HOH HOH . F 5 HOH A 127 927 119 HOH HOH . F 5 HOH A 128 928 24 HOH HOH . F 5 HOH A 129 929 172 HOH HOH . F 5 HOH A 130 930 154 HOH HOH . F 5 HOH A 131 931 123 HOH HOH . F 5 HOH A 132 932 298 HOH HOH . F 5 HOH A 133 933 133 HOH HOH . F 5 HOH A 134 934 122 HOH HOH . F 5 HOH A 135 935 265 HOH HOH . F 5 HOH A 136 936 97 HOH HOH . F 5 HOH A 137 937 57 HOH HOH . F 5 HOH A 138 938 96 HOH HOH . F 5 HOH A 139 939 277 HOH HOH . F 5 HOH A 140 940 229 HOH HOH . F 5 HOH A 141 941 112 HOH HOH . F 5 HOH A 142 942 246 HOH HOH . F 5 HOH A 143 943 82 HOH HOH . F 5 HOH A 144 944 228 HOH HOH . F 5 HOH A 145 945 76 HOH HOH . F 5 HOH A 146 946 211 HOH HOH . F 5 HOH A 147 947 104 HOH HOH . F 5 HOH A 148 948 216 HOH HOH . F 5 HOH A 149 949 116 HOH HOH . F 5 HOH A 150 950 290 HOH HOH . F 5 HOH A 151 951 94 HOH HOH . F 5 HOH A 152 952 287 HOH HOH . F 5 HOH A 153 953 147 HOH HOH . F 5 HOH A 154 954 31 HOH HOH . F 5 HOH A 155 955 225 HOH HOH . F 5 HOH A 156 956 134 HOH HOH . F 5 HOH A 157 957 68 HOH HOH . F 5 HOH A 158 958 208 HOH HOH . F 5 HOH A 159 959 75 HOH HOH . F 5 HOH A 160 960 66 HOH HOH . F 5 HOH A 161 961 163 HOH HOH . F 5 HOH A 162 962 11 HOH HOH . F 5 HOH A 163 963 89 HOH HOH . F 5 HOH A 164 964 176 HOH HOH . F 5 HOH A 165 965 58 HOH HOH . F 5 HOH A 166 966 21 HOH HOH . F 5 HOH A 167 967 203 HOH HOH . F 5 HOH A 168 968 98 HOH HOH . F 5 HOH A 169 969 81 HOH HOH . F 5 HOH A 170 970 236 HOH HOH . F 5 HOH A 171 971 109 HOH HOH . F 5 HOH A 172 972 152 HOH HOH . F 5 HOH A 173 973 65 HOH HOH . F 5 HOH A 174 974 118 HOH HOH . F 5 HOH A 175 975 227 HOH HOH . F 5 HOH A 176 976 250 HOH HOH . F 5 HOH A 177 977 2 HOH HOH . F 5 HOH A 178 978 282 HOH HOH . F 5 HOH A 179 979 285 HOH HOH . F 5 HOH A 180 980 23 HOH HOH . F 5 HOH A 181 981 29 HOH HOH . F 5 HOH A 182 982 226 HOH HOH . F 5 HOH A 183 983 215 HOH HOH . F 5 HOH A 184 984 183 HOH HOH . F 5 HOH A 185 985 63 HOH HOH . F 5 HOH A 186 986 135 HOH HOH . F 5 HOH A 187 987 221 HOH HOH . F 5 HOH A 188 988 34 HOH HOH . F 5 HOH A 189 989 301 HOH HOH . F 5 HOH A 190 990 161 HOH HOH . F 5 HOH A 191 991 61 HOH HOH . F 5 HOH A 192 992 233 HOH HOH . F 5 HOH A 193 993 110 HOH HOH . F 5 HOH A 194 994 39 HOH HOH . F 5 HOH A 195 995 291 HOH HOH . F 5 HOH A 196 996 51 HOH HOH . F 5 HOH A 197 997 174 HOH HOH . F 5 HOH A 198 998 170 HOH HOH . F 5 HOH A 199 999 20 HOH HOH . F 5 HOH A 200 1000 59 HOH HOH . F 5 HOH A 201 1001 43 HOH HOH . F 5 HOH A 202 1002 160 HOH HOH . F 5 HOH A 203 1003 279 HOH HOH . F 5 HOH A 204 1004 71 HOH HOH . F 5 HOH A 205 1005 297 HOH HOH . F 5 HOH A 206 1006 3 HOH HOH . F 5 HOH A 207 1007 19 HOH HOH . F 5 HOH A 208 1008 209 HOH HOH . F 5 HOH A 209 1009 33 HOH HOH . F 5 HOH A 210 1010 35 HOH HOH . F 5 HOH A 211 1011 27 HOH HOH . F 5 HOH A 212 1012 93 HOH HOH . F 5 HOH A 213 1013 28 HOH HOH . F 5 HOH A 214 1014 142 HOH HOH . F 5 HOH A 215 1015 50 HOH HOH . F 5 HOH A 216 1016 164 HOH HOH . F 5 HOH A 217 1017 178 HOH HOH . F 5 HOH A 218 1018 201 HOH HOH . F 5 HOH A 219 1019 60 HOH HOH . F 5 HOH A 220 1020 156 HOH HOH . F 5 HOH A 221 1021 313 HOH HOH . F 5 HOH A 222 1022 199 HOH HOH . F 5 HOH A 223 1023 37 HOH HOH . F 5 HOH A 224 1024 18 HOH HOH . F 5 HOH A 225 1025 253 HOH HOH . F 5 HOH A 226 1026 103 HOH HOH . F 5 HOH A 227 1027 88 HOH HOH . F 5 HOH A 228 1028 115 HOH HOH . F 5 HOH A 229 1029 281 HOH HOH . F 5 HOH A 230 1030 304 HOH HOH . F 5 HOH A 231 1031 309 HOH HOH . F 5 HOH A 232 1032 185 HOH HOH . F 5 HOH A 233 1033 157 HOH HOH . F 5 HOH A 234 1034 284 HOH HOH . F 5 HOH A 235 1035 36 HOH HOH . F 5 HOH A 236 1036 230 HOH HOH . F 5 HOH A 237 1037 262 HOH HOH . F 5 HOH A 238 1038 231 HOH HOH . F 5 HOH A 239 1039 272 HOH HOH . F 5 HOH A 240 1040 92 HOH HOH . F 5 HOH A 241 1041 137 HOH HOH . F 5 HOH A 242 1042 283 HOH HOH . F 5 HOH A 243 1043 90 HOH HOH . F 5 HOH A 244 1044 260 HOH HOH . F 5 HOH A 245 1045 205 HOH HOH . F 5 HOH A 246 1046 247 HOH HOH . F 5 HOH A 247 1047 288 HOH HOH . F 5 HOH A 248 1048 145 HOH HOH . F 5 HOH A 249 1049 139 HOH HOH . F 5 HOH A 250 1050 144 HOH HOH . F 5 HOH A 251 1051 243 HOH HOH . F 5 HOH A 252 1052 302 HOH HOH . F 5 HOH A 253 1053 241 HOH HOH . F 5 HOH A 254 1054 191 HOH HOH . F 5 HOH A 255 1055 210 HOH HOH . F 5 HOH A 256 1056 190 HOH HOH . F 5 HOH A 257 1057 194 HOH HOH . F 5 HOH A 258 1058 255 HOH HOH . F 5 HOH A 259 1059 258 HOH HOH . F 5 HOH A 260 1060 212 HOH HOH . F 5 HOH A 261 1061 197 HOH HOH . F 5 HOH A 262 1062 268 HOH HOH . F 5 HOH A 263 1063 106 HOH HOH . F 5 HOH A 264 1064 303 HOH HOH . F 5 HOH A 265 1065 213 HOH HOH . F 5 HOH A 266 1066 274 HOH HOH . F 5 HOH A 267 1067 307 HOH HOH . F 5 HOH A 268 1068 314 HOH HOH . F 5 HOH A 269 1069 305 HOH HOH . F 5 HOH A 270 1070 125 HOH HOH . F 5 HOH A 271 1071 167 HOH HOH . F 5 HOH A 272 1072 200 HOH HOH . F 5 HOH A 273 1073 162 HOH HOH . F 5 HOH A 274 1074 86 HOH HOH . F 5 HOH A 275 1075 120 HOH HOH . F 5 HOH A 276 1076 311 HOH HOH . F 5 HOH A 277 1077 293 HOH HOH . F 5 HOH A 278 1078 182 HOH HOH . F 5 HOH A 279 1079 292 HOH HOH . F 5 HOH A 280 1080 242 HOH HOH . F 5 HOH A 281 1081 168 HOH HOH . F 5 HOH A 282 1082 252 HOH HOH . F 5 HOH A 283 1083 306 HOH HOH . F 5 HOH A 284 1084 222 HOH HOH . F 5 HOH A 285 1085 67 HOH HOH . F 5 HOH A 286 1086 219 HOH HOH . F 5 HOH A 287 1087 249 HOH HOH . F 5 HOH A 288 1088 299 HOH HOH . F 5 HOH A 289 1089 251 HOH HOH . F 5 HOH A 290 1090 105 HOH HOH . F 5 HOH A 291 1091 140 HOH HOH . F 5 HOH A 292 1092 169 HOH HOH . F 5 HOH A 293 1093 78 HOH HOH . F 5 HOH A 294 1094 278 HOH HOH . F 5 HOH A 295 1095 184 HOH HOH . F 5 HOH A 296 1096 259 HOH HOH . F 5 HOH A 297 1097 308 HOH HOH . F 5 HOH A 298 1098 254 HOH HOH . F 5 HOH A 299 1099 111 HOH HOH . F 5 HOH A 300 1100 79 HOH HOH . F 5 HOH A 301 1101 271 HOH HOH . F 5 HOH A 302 1102 64 HOH HOH . F 5 HOH A 303 1103 316 HOH HOH . F 5 HOH A 304 1104 300 HOH HOH . F 5 HOH A 305 1105 173 HOH HOH . F 5 HOH A 306 1106 192 HOH HOH . F 5 HOH A 307 1107 267 HOH HOH . F 5 HOH A 308 1108 181 HOH HOH . F 5 HOH A 309 1109 256 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . B 2 1.446 -17.493 -13.162 1 45.32 ? C1 GOL 701 A 1 HETATM 2 O O1 GOL . . . B 2 2.651 -18.239 -13.336 1 41.85 ? O1 GOL 701 A 1 HETATM 3 C C2 GOL . . . B 2 1.788 -16.007 -12.795 1 40.46 ? C2 GOL 701 A 1 HETATM 4 O O2 GOL . . . B 2 2.442 -15.911 -11.578 1 40.41 ? O2 GOL 701 A 1 HETATM 5 C C3 GOL . . . B 2 0.447 -15.184 -12.882 1 34.51 ? C3 GOL 701 A 1 HETATM 6 O O3 GOL . . . B 2 -0.529 -15.688 -11.919 1 22.61 ? O3 GOL 701 A 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 15 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 286 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 6 #