data_6TYP # _model_server_result.job_id NrwZF6fZth8fv2aQrBdpCA _model_server_result.datetime_utc '2025-01-11 03:54:54' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6typ # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":802}' # _entry.id 6TYP # _exptl.entry_id 6TYP _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 468.547 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(3S)-3-[2-(benzenecarbonyl)-1,2,3,4-tetrahydroisoquinolin-7-yl]-3-(1-ethyl-4-methyl-1H-benzotriazol-5-yl)propanoic acid' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 106.81 _cell.angle_gamma 90 _cell.entry_id 6TYP _cell.length_a 125.792 _cell.length_b 75.679 _cell.length_c 48.648 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6TYP _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id disulf _struct_conn.details ? _struct_conn.id disulf1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 118 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 434 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id A _struct_conn.ptnr2_label_atom_id SG _struct_conn.ptnr2_label_comp_id CYS _struct_conn.ptnr2_label_seq_id 118 _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id CYS _struct_conn.ptnr2_auth_seq_id 434 _struct_conn.ptnr2_symmetry 2_556 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 2.025 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C28 H28 N4 O3' _chem_comp.formula_weight 468.547 _chem_comp.id PKG _chem_comp.mon_nstd_flag . _chem_comp.name '(3S)-3-[2-(benzenecarbonyl)-1,2,3,4-tetrahydroisoquinolin-7-yl]-3-(1-ethyl-4-methyl-1H-benzotriazol-5-yl)propanoic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N2 N PKG doub 264 n y N2 N1 PKG sing 265 n y C27 C28 PKG sing 266 n n C27 N1 PKG sing 267 n n N CA PKG sing 268 n y N1 C2 PKG sing 269 n y CA C2 PKG doub 270 n y CA CB PKG sing 271 n y C2 C3 PKG sing 272 n y C24 C25 PKG doub 273 n y C24 C23 PKG sing 274 n y C25 C26 PKG sing 275 n y C23 C22 PKG doub 276 n y C7 CB PKG sing 277 n n CB CG PKG doub 278 n y C3 CD2 PKG doub 279 n y C26 C21 PKG doub 280 n y C22 C21 PKG sing 281 n y C21 C20 PKG sing 282 n n CG CD2 PKG sing 283 n y CG CD1 PKG sing 284 n n O2 CZ PKG doub 285 n n O C20 PKG doub 286 n n C20 N4 PKG sing 287 n n CD1 C11 PKG sing 288 n n CD1 CE1 PKG sing 289 n n C11 C12 PKG doub 290 n y C11 C16 PKG sing 291 n y N4 C19 PKG sing 292 n n N4 C18 PKG sing 293 n n C12 C13 PKG sing 294 n y CZ CE1 PKG sing 295 n n CZ OH PKG sing 296 n n C16 C15 PKG doub 297 n y C13 C19 PKG sing 298 n n C13 C14 PKG doub 299 n y C18 C17 PKG sing 300 n n C15 C14 PKG sing 301 n y C14 C17 PKG sing 302 n n C7 H1 PKG sing 303 n n C7 H2 PKG sing 304 n n C7 H3 PKG sing 305 n n CD1 H4 PKG sing 306 n n CD2 H5 PKG sing 307 n n CE1 H6 PKG sing 308 n n CE1 H7 PKG sing 309 n n OH H8 PKG sing 310 n n C12 H9 PKG sing 311 n n C15 H10 PKG sing 312 n n C16 H11 PKG sing 313 n n C17 H12 PKG sing 314 n n C17 H13 PKG sing 315 n n C18 H14 PKG sing 316 n n C18 H15 PKG sing 317 n n C19 H16 PKG sing 318 n n C19 H17 PKG sing 319 n n C22 H18 PKG sing 320 n n C23 H19 PKG sing 321 n n C24 H20 PKG sing 322 n n C25 H21 PKG sing 323 n n C26 H22 PKG sing 324 n n C27 H23 PKG sing 325 n n C27 H24 PKG sing 326 n n C28 H25 PKG sing 327 n n C28 H26 PKG sing 328 n n C28 H27 PKG sing 329 n n C3 H28 PKG sing 330 n n # _atom_sites.entry_id 6TYP _atom_sites.fract_transf_matrix[1][1] 0.00795 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.002402 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013214 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.021473 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 FMT A 1 801 801 FMT FMT . C 3 PKG A 1 802 1 PKG 267 . D 4 HOH A 1 901 30 HOH HOH . D 4 HOH A 2 902 34 HOH HOH . D 4 HOH A 3 903 52 HOH HOH . D 4 HOH A 4 904 26 HOH HOH . D 4 HOH A 5 905 2 HOH HOH . D 4 HOH A 6 906 11 HOH HOH . D 4 HOH A 7 907 4 HOH HOH . D 4 HOH A 8 908 41 HOH HOH . D 4 HOH A 9 909 24 HOH HOH . D 4 HOH A 10 910 8 HOH HOH . D 4 HOH A 11 911 3 HOH HOH . D 4 HOH A 12 912 57 HOH HOH . D 4 HOH A 13 913 51 HOH HOH . D 4 HOH A 14 914 53 HOH HOH . D 4 HOH A 15 915 59 HOH HOH . D 4 HOH A 16 916 46 HOH HOH . D 4 HOH A 17 917 16 HOH HOH . D 4 HOH A 18 918 1 HOH HOH . D 4 HOH A 19 919 7 HOH HOH . D 4 HOH A 20 920 60 HOH HOH . D 4 HOH A 21 921 17 HOH HOH . D 4 HOH A 22 922 5 HOH HOH . D 4 HOH A 23 923 27 HOH HOH . D 4 HOH A 24 924 14 HOH HOH . D 4 HOH A 25 925 10 HOH HOH . D 4 HOH A 26 926 39 HOH HOH . D 4 HOH A 27 927 23 HOH HOH . D 4 HOH A 28 928 33 HOH HOH . D 4 HOH A 29 929 9 HOH HOH . D 4 HOH A 30 930 15 HOH HOH . D 4 HOH A 31 931 21 HOH HOH . D 4 HOH A 32 932 43 HOH HOH . D 4 HOH A 33 933 31 HOH HOH . D 4 HOH A 34 934 63 HOH HOH . D 4 HOH A 35 935 47 HOH HOH . D 4 HOH A 36 936 22 HOH HOH . D 4 HOH A 37 937 55 HOH HOH . D 4 HOH A 38 938 62 HOH HOH . D 4 HOH A 39 939 28 HOH HOH . D 4 HOH A 40 940 12 HOH HOH . D 4 HOH A 41 941 45 HOH HOH . D 4 HOH A 42 942 54 HOH HOH . D 4 HOH A 43 943 40 HOH HOH . D 4 HOH A 44 944 13 HOH HOH . D 4 HOH A 45 945 20 HOH HOH . D 4 HOH A 46 946 29 HOH HOH . D 4 HOH A 47 947 48 HOH HOH . D 4 HOH A 48 948 32 HOH HOH . D 4 HOH A 49 949 56 HOH HOH . D 4 HOH A 50 950 42 HOH HOH . D 4 HOH A 51 951 6 HOH HOH . D 4 HOH A 52 952 61 HOH HOH . D 4 HOH A 53 953 50 HOH HOH . D 4 HOH A 54 954 44 HOH HOH . D 4 HOH A 55 955 49 HOH HOH . D 4 HOH A 56 956 58 HOH HOH . D 4 HOH A 57 957 19 HOH HOH . D 4 HOH A 58 958 25 HOH HOH . D 4 HOH A 59 959 18 HOH HOH . D 4 HOH A 60 960 35 HOH HOH . D 4 HOH A 61 961 36 HOH HOH . D 4 HOH A 62 962 37 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C14 PKG . . . C 3 -18.258 3.678 15.9 1 45.47 ? C14 PKG 802 A 1 HETATM 2 C C11 PKG . . . C 3 -16.336 1.989 14.898 1 48.01 ? C11 PKG 802 A 1 HETATM 3 C C7 PKG . . . C 3 -16.908 1.185 11.855 1 35.98 ? C7 PKG 802 A 1 HETATM 4 C C13 PKG . . . C 3 -17.066 4.18 15.443 1 44.03 ? C13 PKG 802 A 1 HETATM 5 N N1 PKG . . . C 3 -13.332 3.009 9.581 1 56.07 ? N1 PKG 802 A 1 HETATM 6 N N2 PKG . . . C 3 -14.396 2.863 8.781 1 56.87 ? N2 PKG 802 A 1 HETATM 7 N N PKG . . . C 3 -15.362 2.338 9.522 1 53.66 ? N PKG 802 A 1 HETATM 8 C CA PKG . . . C 3 -14.877 2.162 10.791 1 55.7 ? CA PKG 802 A 1 HETATM 9 O O PKG . . . C 3 -18.989 8.148 14.137 1 57.89 ? O PKG 802 A 1 HETATM 10 C CB PKG . . . C 3 -15.496 1.65 11.912 1 44.98 ? CB PKG 802 A 1 HETATM 11 C CG PKG . . . C 3 -14.739 1.594 13.066 1 53.64 ? CG PKG 802 A 1 HETATM 12 C CD1 PKG . . . C 3 -15.312 1.063 14.34 1 54.6 ? CD1 PKG 802 A 1 HETATM 13 C CD2 PKG . . . C 3 -13.437 2.042 13.074 1 44.11 ? CD2 PKG 802 A 1 HETATM 14 C CE1 PKG . . . C 3 -14.243 0.766 15.37 1 56.08 ? CE1 PKG 802 A 1 HETATM 15 C CZ PKG . . . C 3 -13.529 -0.502 14.942 1 63.13 ? CZ PKG 802 A 1 HETATM 16 O OH PKG . . . C 3 -12.417 -0.691 15.506 1 55.04 ? OH PKG 802 A 1 HETATM 17 C C12 PKG . . . C 3 -16.103 3.344 14.933 1 50.85 ? C12 PKG 802 A 1 HETATM 18 C C15 PKG . . . C 3 -18.495 2.326 15.859 1 37.81 ? C15 PKG 802 A 1 HETATM 19 C C16 PKG . . . C 3 -17.531 1.486 15.356 1 40.51 ? C16 PKG 802 A 1 HETATM 20 C C17 PKG . . . C 3 -19.268 4.627 16.44 1 40.15 ? C17 PKG 802 A 1 HETATM 21 C C18 PKG . . . C 3 -19.335 5.892 15.61 1 51.96 ? C18 PKG 802 A 1 HETATM 22 C C19 PKG . . . C 3 -16.901 5.652 15.511 1 37.53 ? C19 PKG 802 A 1 HETATM 23 C C2 PKG . . . C 3 -13.572 2.587 10.853 1 61.15 ? C2 PKG 802 A 1 HETATM 24 C C20 PKG . . . C 3 -18.077 7.336 14.181 1 58.39 ? C20 PKG 802 A 1 HETATM 25 C C21 PKG . . . C 3 -17.179 7.303 13.028 1 54.99 ? C21 PKG 802 A 1 HETATM 26 C C22 PKG . . . C 3 -16.457 8.441 12.76 1 52.89 ? C22 PKG 802 A 1 HETATM 27 C C23 PKG . . . C 3 -15.61 8.45 11.678 1 56.55 ? C23 PKG 802 A 1 HETATM 28 C C24 PKG . . . C 3 -15.505 7.337 10.879 1 50.87 ? C24 PKG 802 A 1 HETATM 29 C C25 PKG . . . C 3 -16.242 6.208 11.153 1 61.53 ? C25 PKG 802 A 1 HETATM 30 C C26 PKG . . . C 3 -17.095 6.186 12.231 1 53.04 ? C26 PKG 802 A 1 HETATM 31 C C27 PKG . . . C 3 -12.097 3.563 9.074 1 51.67 ? C27 PKG 802 A 1 HETATM 32 C C28 PKG . . . C 3 -12.043 5.038 9.383 1 37.61 ? C28 PKG 802 A 1 HETATM 33 C C3 PKG . . . C 3 -12.79 2.551 11.976 1 48.32 ? C3 PKG 802 A 1 HETATM 34 N N4 PKG . . . C 3 -18.102 6.185 14.926 1 62.86 ? N4 PKG 802 A 1 HETATM 35 O O2 PKG . . . C 3 -14.129 -1.198 14.078 1 68.55 ? O2 PKG 802 A 1 # _model_server_stats.io_time_ms 89 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 296 _model_server_stats.encode_time_ms 11 _model_server_stats.element_count 35 #