data_6TZH # _model_server_result.job_id Sj37X7GKyt05i1YwDKuAPA _model_server_result.datetime_utc '2024-11-13 00:24:43' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6tzh # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"N","auth_seq_id":402}' # _entry.id 6TZH # _exptl.entry_id 6TZH _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 75.067 _entity.id 3 _entity.src_method nat _entity.type non-polymer _entity.pdbx_description GLYCINE _entity.pdbx_number_of_molecules 5 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 113.1 _cell.angle_gamma 90 _cell.entry_id 6TZH _cell.length_a 88.554 _cell.length_b 81.464 _cell.length_c 105.665 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6TZH _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 PISA monomeric 1 author_and_software_defined_assembly 3 PISA monomeric 1 author_and_software_defined_assembly 4 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,E,F,O 1 1 B,G,H,I,J,P 2 1 C,K,L,Q 3 1 D,M,N,R 4 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 F N N ? 3 I N N ? 3 J N N ? 3 L N N ? 3 N N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A OG SER 66 A SER 64 1_555 E B7 ERF . A ERF 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.442 ? covale ? covale2 B OG SER 66 B SER 64 1_555 G B7 ERF . B ERF 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.428 ? covale ? covale3 C OG SER 66 C SER 64 1_555 K B7 ERF . C ERF 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.438 ? covale ? covale4 D OG SER 66 D SER 64 1_555 M B7 ERF . D ERF 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.447 ? # _chem_comp.formula 'C2 H5 N O2' _chem_comp.formula_weight 75.067 _chem_comp.id GLY _chem_comp.mon_nstd_flag y _chem_comp.name GLYCINE _chem_comp.type 'peptide linking' _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N CA GLY sing 135 n n N H GLY sing 136 n n N H2 GLY sing 137 n n CA C GLY sing 138 n n CA HA2 GLY sing 139 n n CA HA3 GLY sing 140 n n C O GLY doub 141 n n C OXT GLY sing 142 n n OXT HXT GLY sing 143 n n # _atom_sites.entry_id 6TZH _atom_sites.fract_transf_matrix[1][1] 0.011293 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.004816 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012275 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010289 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 ERF A 1 401 1 ERF ERF . F 3 GLY A 1 402 3 GLY GLY . G 2 ERF B 1 401 2 ERF ERF . H 4 PO4 B 1 402 1 PO4 PO4 . I 3 GLY B 1 403 2 GLY GLY . J 3 GLY B 1 404 4 GLY GLY . K 2 ERF C 1 401 3 ERF ERF . L 3 GLY C 1 402 5 GLY GLY . M 2 ERF D 1 401 4 ERF ERF . N 3 GLY D 1 402 6 GLY GLY . O 5 HOH A 1 501 12 HOH HOH . O 5 HOH A 2 502 194 HOH HOH . O 5 HOH A 3 503 112 HOH HOH . O 5 HOH A 4 504 195 HOH HOH . O 5 HOH A 5 505 178 HOH HOH . O 5 HOH A 6 506 56 HOH HOH . O 5 HOH A 7 507 120 HOH HOH . O 5 HOH A 8 508 173 HOH HOH . O 5 HOH A 9 509 83 HOH HOH . O 5 HOH A 10 510 29 HOH HOH . O 5 HOH A 11 511 213 HOH HOH . O 5 HOH A 12 512 45 HOH HOH . O 5 HOH A 13 513 50 HOH HOH . O 5 HOH A 14 514 159 HOH HOH . O 5 HOH A 15 515 144 HOH HOH . O 5 HOH A 16 516 115 HOH HOH . O 5 HOH A 17 517 86 HOH HOH . O 5 HOH A 18 518 23 HOH HOH . O 5 HOH A 19 519 121 HOH HOH . O 5 HOH A 20 520 126 HOH HOH . O 5 HOH A 21 521 190 HOH HOH . O 5 HOH A 22 522 73 HOH HOH . O 5 HOH A 23 523 68 HOH HOH . O 5 HOH A 24 524 193 HOH HOH . O 5 HOH A 25 525 74 HOH HOH . O 5 HOH A 26 526 93 HOH HOH . O 5 HOH A 27 527 15 HOH HOH . O 5 HOH A 28 528 11 HOH HOH . O 5 HOH A 29 529 8 HOH HOH . O 5 HOH A 30 530 107 HOH HOH . O 5 HOH A 31 531 167 HOH HOH . O 5 HOH A 32 532 171 HOH HOH . O 5 HOH A 33 533 26 HOH HOH . O 5 HOH A 34 534 163 HOH HOH . O 5 HOH A 35 535 16 HOH HOH . O 5 HOH A 36 536 148 HOH HOH . O 5 HOH A 37 537 160 HOH HOH . O 5 HOH A 38 538 1 HOH HOH . O 5 HOH A 39 539 137 HOH HOH . O 5 HOH A 40 540 169 HOH HOH . O 5 HOH A 41 541 62 HOH HOH . O 5 HOH A 42 542 105 HOH HOH . O 5 HOH A 43 543 111 HOH HOH . O 5 HOH A 44 544 46 HOH HOH . O 5 HOH A 45 545 161 HOH HOH . O 5 HOH A 46 546 17 HOH HOH . O 5 HOH A 47 547 138 HOH HOH . O 5 HOH A 48 548 9 HOH HOH . O 5 HOH A 49 549 99 HOH HOH . O 5 HOH A 50 550 80 HOH HOH . O 5 HOH A 51 551 141 HOH HOH . O 5 HOH A 52 552 223 HOH HOH . O 5 HOH A 53 553 224 HOH HOH . O 5 HOH A 54 554 119 HOH HOH . O 5 HOH A 55 555 212 HOH HOH . O 5 HOH A 56 556 170 HOH HOH . O 5 HOH A 57 557 192 HOH HOH . O 5 HOH A 58 558 127 HOH HOH . P 5 HOH B 1 501 116 HOH HOH . P 5 HOH B 2 502 181 HOH HOH . P 5 HOH B 3 503 218 HOH HOH . P 5 HOH B 4 504 38 HOH HOH . P 5 HOH B 5 505 71 HOH HOH . P 5 HOH B 6 506 179 HOH HOH . P 5 HOH B 7 507 189 HOH HOH . P 5 HOH B 8 508 210 HOH HOH . P 5 HOH B 9 509 185 HOH HOH . P 5 HOH B 10 510 182 HOH HOH . P 5 HOH B 11 511 117 HOH HOH . P 5 HOH B 12 512 151 HOH HOH . P 5 HOH B 13 513 35 HOH HOH . P 5 HOH B 14 514 209 HOH HOH . P 5 HOH B 15 515 69 HOH HOH . P 5 HOH B 16 516 72 HOH HOH . P 5 HOH B 17 517 104 HOH HOH . P 5 HOH B 18 518 10 HOH HOH . P 5 HOH B 19 519 67 HOH HOH . P 5 HOH B 20 520 122 HOH HOH . P 5 HOH B 21 521 39 HOH HOH . P 5 HOH B 22 522 140 HOH HOH . P 5 HOH B 23 523 37 HOH HOH . P 5 HOH B 24 524 183 HOH HOH . P 5 HOH B 25 525 142 HOH HOH . P 5 HOH B 26 526 96 HOH HOH . P 5 HOH B 27 527 180 HOH HOH . P 5 HOH B 28 528 184 HOH HOH . P 5 HOH B 29 529 41 HOH HOH . P 5 HOH B 30 530 168 HOH HOH . P 5 HOH B 31 531 52 HOH HOH . P 5 HOH B 32 532 5 HOH HOH . P 5 HOH B 33 533 149 HOH HOH . P 5 HOH B 34 534 211 HOH HOH . P 5 HOH B 35 535 98 HOH HOH . P 5 HOH B 36 536 187 HOH HOH . P 5 HOH B 37 537 191 HOH HOH . P 5 HOH B 38 538 106 HOH HOH . P 5 HOH B 39 539 186 HOH HOH . P 5 HOH B 40 540 63 HOH HOH . P 5 HOH B 41 541 102 HOH HOH . P 5 HOH B 42 542 20 HOH HOH . P 5 HOH B 43 543 40 HOH HOH . P 5 HOH B 44 544 85 HOH HOH . P 5 HOH B 45 545 48 HOH HOH . P 5 HOH B 46 546 65 HOH HOH . P 5 HOH B 47 547 32 HOH HOH . P 5 HOH B 48 548 34 HOH HOH . P 5 HOH B 49 549 77 HOH HOH . P 5 HOH B 50 550 59 HOH HOH . P 5 HOH B 51 551 60 HOH HOH . P 5 HOH B 52 552 110 HOH HOH . P 5 HOH B 53 553 44 HOH HOH . P 5 HOH B 54 554 24 HOH HOH . P 5 HOH B 55 555 166 HOH HOH . P 5 HOH B 56 556 217 HOH HOH . P 5 HOH B 57 557 66 HOH HOH . P 5 HOH B 58 558 130 HOH HOH . P 5 HOH B 59 559 21 HOH HOH . P 5 HOH B 60 560 6 HOH HOH . P 5 HOH B 61 561 42 HOH HOH . P 5 HOH B 62 562 70 HOH HOH . P 5 HOH B 63 563 97 HOH HOH . P 5 HOH B 64 564 47 HOH HOH . P 5 HOH B 65 565 174 HOH HOH . P 5 HOH B 66 566 51 HOH HOH . P 5 HOH B 67 567 95 HOH HOH . P 5 HOH B 68 568 3 HOH HOH . P 5 HOH B 69 569 43 HOH HOH . P 5 HOH B 70 570 27 HOH HOH . P 5 HOH B 71 571 90 HOH HOH . P 5 HOH B 72 572 101 HOH HOH . P 5 HOH B 73 573 28 HOH HOH . P 5 HOH B 74 574 89 HOH HOH . P 5 HOH B 75 575 135 HOH HOH . P 5 HOH B 76 576 100 HOH HOH . P 5 HOH B 77 577 53 HOH HOH . P 5 HOH B 78 578 114 HOH HOH . P 5 HOH B 79 579 4 HOH HOH . P 5 HOH B 80 580 175 HOH HOH . P 5 HOH B 81 581 92 HOH HOH . P 5 HOH B 82 582 152 HOH HOH . P 5 HOH B 83 583 220 HOH HOH . P 5 HOH B 84 584 33 HOH HOH . P 5 HOH B 85 585 219 HOH HOH . P 5 HOH B 86 586 128 HOH HOH . P 5 HOH B 87 587 2 HOH HOH . P 5 HOH B 88 588 162 HOH HOH . P 5 HOH B 89 589 139 HOH HOH . P 5 HOH B 90 590 75 HOH HOH . P 5 HOH B 91 591 113 HOH HOH . P 5 HOH B 92 592 22 HOH HOH . P 5 HOH B 93 593 143 HOH HOH . P 5 HOH B 94 594 150 HOH HOH . P 5 HOH B 95 595 54 HOH HOH . P 5 HOH B 96 596 78 HOH HOH . P 5 HOH B 97 597 79 HOH HOH . P 5 HOH B 98 598 172 HOH HOH . P 5 HOH B 99 599 165 HOH HOH . P 5 HOH B 100 600 133 HOH HOH . P 5 HOH B 101 601 87 HOH HOH . P 5 HOH B 102 602 118 HOH HOH . P 5 HOH B 103 603 84 HOH HOH . P 5 HOH B 104 604 131 HOH HOH . P 5 HOH B 105 605 156 HOH HOH . P 5 HOH B 106 606 153 HOH HOH . P 5 HOH B 107 607 214 HOH HOH . P 5 HOH B 108 608 136 HOH HOH . P 5 HOH B 109 609 215 HOH HOH . P 5 HOH B 110 610 216 HOH HOH . P 5 HOH B 111 611 55 HOH HOH . P 5 HOH B 112 612 76 HOH HOH . Q 5 HOH C 1 501 197 HOH HOH . Q 5 HOH C 2 502 196 HOH HOH . Q 5 HOH C 3 503 226 HOH HOH . Q 5 HOH C 4 504 25 HOH HOH . Q 5 HOH C 5 505 198 HOH HOH . Q 5 HOH C 6 506 109 HOH HOH . Q 5 HOH C 7 507 123 HOH HOH . Q 5 HOH C 8 508 58 HOH HOH . Q 5 HOH C 9 509 225 HOH HOH . Q 5 HOH C 10 510 164 HOH HOH . Q 5 HOH C 11 511 36 HOH HOH . Q 5 HOH C 12 512 108 HOH HOH . Q 5 HOH C 13 513 134 HOH HOH . Q 5 HOH C 14 514 145 HOH HOH . Q 5 HOH C 15 515 18 HOH HOH . Q 5 HOH C 16 516 146 HOH HOH . Q 5 HOH C 17 517 57 HOH HOH . Q 5 HOH C 18 518 207 HOH HOH . Q 5 HOH C 19 519 124 HOH HOH . Q 5 HOH C 20 520 94 HOH HOH . Q 5 HOH C 21 521 147 HOH HOH . Q 5 HOH C 22 522 176 HOH HOH . Q 5 HOH C 23 523 154 HOH HOH . Q 5 HOH C 24 524 125 HOH HOH . Q 5 HOH C 25 525 13 HOH HOH . Q 5 HOH C 26 526 7 HOH HOH . Q 5 HOH C 27 527 158 HOH HOH . Q 5 HOH C 28 528 14 HOH HOH . Q 5 HOH C 29 529 129 HOH HOH . Q 5 HOH C 30 530 49 HOH HOH . Q 5 HOH C 31 531 91 HOH HOH . Q 5 HOH C 32 532 88 HOH HOH . Q 5 HOH C 33 533 31 HOH HOH . Q 5 HOH C 34 534 61 HOH HOH . Q 5 HOH C 35 535 155 HOH HOH . Q 5 HOH C 36 536 82 HOH HOH . Q 5 HOH C 37 537 132 HOH HOH . Q 5 HOH C 38 538 81 HOH HOH . Q 5 HOH C 39 539 222 HOH HOH . Q 5 HOH C 40 540 188 HOH HOH . Q 5 HOH C 41 541 221 HOH HOH . R 5 HOH D 1 501 234 HOH HOH . R 5 HOH D 2 502 235 HOH HOH . R 5 HOH D 3 503 233 HOH HOH . R 5 HOH D 4 504 231 HOH HOH . R 5 HOH D 5 505 201 HOH HOH . R 5 HOH D 6 506 203 HOH HOH . R 5 HOH D 7 507 232 HOH HOH . R 5 HOH D 8 508 236 HOH HOH . R 5 HOH D 9 509 103 HOH HOH . R 5 HOH D 10 510 204 HOH HOH . R 5 HOH D 11 511 227 HOH HOH . R 5 HOH D 12 512 19 HOH HOH . R 5 HOH D 13 513 177 HOH HOH . R 5 HOH D 14 514 157 HOH HOH . R 5 HOH D 15 515 205 HOH HOH . R 5 HOH D 16 516 200 HOH HOH . R 5 HOH D 17 517 230 HOH HOH . R 5 HOH D 18 518 206 HOH HOH . R 5 HOH D 19 519 64 HOH HOH . R 5 HOH D 20 520 199 HOH HOH . R 5 HOH D 21 521 228 HOH HOH . R 5 HOH D 22 522 30 HOH HOH . R 5 HOH D 23 523 208 HOH HOH . R 5 HOH D 24 524 202 HOH HOH . R 5 HOH D 25 525 229 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N GLY . . . N 3 39.455 -16.124 25.367 1 54.66 ? N GLY 402 D 1 HETATM 2 C CA GLY . . . N 3 40.768 -15.904 24.721 1 53.83 ? CA GLY 402 D 1 HETATM 3 C C GLY . . . N 3 40.603 -15.296 23.343 1 59.95 ? C GLY 402 D 1 HETATM 4 O O GLY . . . N 3 39.838 -15.816 22.521 1 53.73 ? O GLY 402 D 1 HETATM 5 O OXT GLY . . . N 3 41.23 -14.274 23.041 1 62.78 ? OXT GLY 402 D 1 # _model_server_stats.io_time_ms 19 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 12 _model_server_stats.query_time_ms 244 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 5 #