data_6TZY # _model_server_result.job_id NIB8pmWTGdAWAS7BlvaPWQ _model_server_result.datetime_utc '2024-11-23 10:05:46' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6tzy # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":400}' # _entry.id 6TZY # _exptl.entry_id 6TZY _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 40.078 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CALCIUM ION' _entity.pdbx_number_of_molecules 5 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 116.19 _cell.angle_gamma 90 _cell.entry_id 6TZY _cell.length_a 108.017 _cell.length_b 135.126 _cell.length_c 90.974 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6TZY _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 PISA monomeric 1 author_and_software_defined_assembly 3 PISA monomeric 1 author_and_software_defined_assembly 4 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,E,J 1 1 B,F,G,K 2 1 C,H,L 3 1 D,I,M 4 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 E N N ? 2 F N N ? 2 G N N ? 2 H N N ? 2 I N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD2 ASP 146 A ASP 146 1_555 E CA CA . A CA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.379 ? metalc ? metalc2 A OD1 ASN 268 A ASN 268 1_555 E CA CA . A CA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.521 ? metalc ? metalc3 A OD1 ASP 272 A ASP 272 1_555 E CA CA . A CA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.451 ? metalc ? metalc4 A OD2 ASP 272 A ASP 272 1_555 E CA CA . A CA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.299 ? metalc ? metalc5 E CA CA . A CA 401 1_555 J O HOH . A HOH 515 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.5 ? metalc ? metalc6 B O LYS 67 B LYS 67 1_555 F CA CA . B CA 400 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.916 ? metalc ? metalc7 B OE1 GLU 69 B GLU 69 1_555 F CA CA . B CA 400 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.635 ? metalc ? metalc8 B OE2 GLU 69 B GLU 69 1_555 F CA CA . B CA 400 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.324 ? metalc ? metalc9 B OD2 ASP 146 B ASP 146 1_555 G CA CA . B CA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.409 ? metalc ? metalc10 B OD1 ASN 268 B ASN 268 1_555 G CA CA . B CA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.515 ? metalc ? metalc11 B OD1 ASP 272 B ASP 272 1_555 G CA CA . B CA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.481 ? metalc ? metalc12 B OD2 ASP 272 B ASP 272 1_555 G CA CA . B CA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.307 ? metalc ? metalc13 F CA CA . B CA 400 4_546 C OD1 ASP 35 C ASP 35 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.625 ? metalc ? metalc14 F CA CA . B CA 400 1_555 L O HOH . C HOH 504 4_556 ? ? ? ? ? ? ? ? ? ? ? ? 2.369 ? metalc ? metalc15 G CA CA . B CA 401 1_555 K O HOH . B HOH 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.405 ? metalc ? metalc16 C OD2 ASP 146 C ASP 146 1_555 H CA CA . C CA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.369 ? metalc ? metalc17 C OD1 ASN 268 C ASN 268 1_555 H CA CA . C CA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.487 ? metalc ? metalc18 C OD1 ASP 272 C ASP 272 1_555 H CA CA . C CA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.422 ? metalc ? metalc19 C OD2 ASP 272 C ASP 272 1_555 H CA CA . C CA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.256 ? metalc ? metalc20 D OD2 ASP 146 D ASP 146 1_555 I CA CA . D CA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.379 ? metalc ? metalc21 D OD1 ASN 268 D ASN 268 1_555 I CA CA . D CA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.354 ? metalc ? metalc22 D OD1 ASP 272 D ASP 272 1_555 I CA CA . D CA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.07 ? metalc ? metalc23 D OD2 ASP 272 D ASP 272 1_555 I CA CA . D CA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.367 ? metalc ? metalc24 I CA CA . D CA 401 1_555 M O HOH . D HOH 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.465 ? # _chem_comp.formula 'Ca 2' _chem_comp.formula_weight 40.078 _chem_comp.id CA _chem_comp.mon_nstd_flag . _chem_comp.name 'CALCIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 6TZY _atom_sites.fract_transf_matrix[1][1] 0.009258 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.004553 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007401 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012249 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 CA A 1 401 401 CA CA . F 2 CA B 1 400 400 CA CA . G 2 CA B 1 401 401 CA CA . H 2 CA C 1 401 401 CA CA . I 2 CA D 1 401 401 CA CA . J 3 HOH A 1 501 16 HOH HOH . J 3 HOH A 2 502 5 HOH HOH . J 3 HOH A 3 503 18 HOH HOH . J 3 HOH A 4 504 43 HOH HOH . J 3 HOH A 5 505 15 HOH HOH . J 3 HOH A 6 506 3 HOH HOH . J 3 HOH A 7 507 11 HOH HOH . J 3 HOH A 8 508 28 HOH HOH . J 3 HOH A 9 509 4 HOH HOH . J 3 HOH A 10 510 29 HOH HOH . J 3 HOH A 11 511 17 HOH HOH . J 3 HOH A 12 512 8 HOH HOH . J 3 HOH A 13 513 36 HOH HOH . J 3 HOH A 14 514 19 HOH HOH . J 3 HOH A 15 515 53 HOH HOH . J 3 HOH A 16 516 41 HOH HOH . J 3 HOH A 17 517 52 HOH HOH . J 3 HOH A 18 518 51 HOH HOH . K 3 HOH B 1 501 60 HOH HOH . K 3 HOH B 2 502 7 HOH HOH . K 3 HOH B 3 503 14 HOH HOH . K 3 HOH B 4 504 32 HOH HOH . K 3 HOH B 5 505 9 HOH HOH . K 3 HOH B 6 506 21 HOH HOH . K 3 HOH B 7 507 44 HOH HOH . K 3 HOH B 8 508 10 HOH HOH . K 3 HOH B 9 509 23 HOH HOH . K 3 HOH B 10 510 24 HOH HOH . K 3 HOH B 11 511 33 HOH HOH . K 3 HOH B 12 512 22 HOH HOH . K 3 HOH B 13 513 1 HOH HOH . K 3 HOH B 14 514 6 HOH HOH . K 3 HOH B 15 515 39 HOH HOH . K 3 HOH B 16 516 55 HOH HOH . K 3 HOH B 17 517 62 HOH HOH . K 3 HOH B 18 518 54 HOH HOH . L 3 HOH C 1 501 45 HOH HOH . L 3 HOH C 2 502 25 HOH HOH . L 3 HOH C 3 503 26 HOH HOH . L 3 HOH C 4 504 40 HOH HOH . L 3 HOH C 5 505 46 HOH HOH . L 3 HOH C 6 506 42 HOH HOH . L 3 HOH C 7 507 13 HOH HOH . L 3 HOH C 8 508 57 HOH HOH . L 3 HOH C 9 509 30 HOH HOH . L 3 HOH C 10 510 27 HOH HOH . L 3 HOH C 11 511 56 HOH HOH . L 3 HOH C 12 512 58 HOH HOH . M 3 HOH D 1 501 48 HOH HOH . M 3 HOH D 2 502 61 HOH HOH . M 3 HOH D 3 503 49 HOH HOH . M 3 HOH D 4 504 38 HOH HOH . M 3 HOH D 5 505 34 HOH HOH . M 3 HOH D 6 506 31 HOH HOH . M 3 HOH D 7 507 12 HOH HOH . M 3 HOH D 8 508 20 HOH HOH . M 3 HOH D 9 509 50 HOH HOH . M 3 HOH D 10 510 37 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol CA _atom_site.label_atom_id CA _atom_site.label_comp_id CA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id F _atom_site.label_entity_id 2 _atom_site.Cartn_x -3.4 _atom_site.Cartn_y 17.867 _atom_site.Cartn_z 58.693 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 96.35 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id CA _atom_site.auth_comp_id CA _atom_site.auth_seq_id 400 _atom_site.auth_asym_id B _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 91 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 20 _model_server_stats.query_time_ms 294 _model_server_stats.encode_time_ms 8 _model_server_stats.element_count 1 #