data_6U03 # _model_server_result.job_id J4BYgVx1JtDzdMLhxfSk5Q _model_server_result.datetime_utc '2025-01-25 11:59:53' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6u03 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":701}' # _entry.id 6U03 # _exptl.entry_id 6U03 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 523.18 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "GUANOSINE-5'-TRIPHOSPHATE" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6U03 _cell.length_a 50.227 _cell.length_b 55.667 _cell.length_c 81.795 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6U03 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OG1 THR 26 A THR 426 1_555 C MG MG . A MG 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.986 ? metalc ? metalc2 B O1G GTP . A GTP 701 1_555 C MG MG . A MG 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.932 ? metalc ? metalc3 B O1B GTP . A GTP 701 1_555 C MG MG . A MG 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.062 ? metalc ? metalc4 C MG MG . A MG 702 1_555 D O HOH . A HOH 820 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.252 ? metalc ? metalc5 C MG MG . A MG 702 1_555 D O HOH . A HOH 827 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.017 ? metalc ? metalc6 C MG MG . A MG 702 1_555 D O HOH . A HOH 894 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.443 ? # _chem_comp.formula 'C10 H16 N5 O14 P3' _chem_comp.formula_weight 523.18 _chem_comp.id GTP _chem_comp.mon_nstd_flag n _chem_comp.name "GUANOSINE-5'-TRIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G GTP doub 129 n n PG O2G GTP sing 130 n n PG O3G GTP sing 131 n n PG O3B GTP sing 132 n n O2G HOG2 GTP sing 133 n n O3G HOG3 GTP sing 134 n n O3B PB GTP sing 135 n n PB O1B GTP doub 136 n n PB O2B GTP sing 137 n n PB O3A GTP sing 138 n n O2B HOB2 GTP sing 139 n n O3A PA GTP sing 140 n n PA O1A GTP doub 141 n n PA O2A GTP sing 142 n n PA O5' GTP sing 143 n n O2A HOA2 GTP sing 144 n n O5' C5' GTP sing 145 n n C5' C4' GTP sing 146 n n C5' H5' GTP sing 147 n n C5' "H5''" GTP sing 148 n n C4' O4' GTP sing 149 n n C4' C3' GTP sing 150 n n C4' H4' GTP sing 151 n n O4' C1' GTP sing 152 n n C3' O3' GTP sing 153 n n C3' C2' GTP sing 154 n n C3' H3' GTP sing 155 n n O3' HO3' GTP sing 156 n n C2' O2' GTP sing 157 n n C2' C1' GTP sing 158 n n C2' H2' GTP sing 159 n n O2' HO2' GTP sing 160 n n C1' N9 GTP sing 161 n n C1' H1' GTP sing 162 n n N9 C8 GTP sing 163 n y N9 C4 GTP sing 164 n y C8 N7 GTP doub 165 n y C8 H8 GTP sing 166 n n N7 C5 GTP sing 167 n y C5 C6 GTP sing 168 n n C5 C4 GTP doub 169 n y C6 O6 GTP doub 170 n n C6 N1 GTP sing 171 n n N1 C2 GTP sing 172 n n N1 HN1 GTP sing 173 n n C2 N2 GTP sing 174 n n C2 N3 GTP doub 175 n n N2 HN21 GTP sing 176 n n N2 HN22 GTP sing 177 n n N3 C4 GTP sing 178 n n # _atom_sites.entry_id 6U03 _atom_sites.fract_transf_matrix[1][1] 0.01991 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.017964 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012226 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 GTP A 1 701 701 GTP GTP . C 3 MG A 1 702 702 MG MG . D 4 HOH A 1 801 127 HOH HOH . D 4 HOH A 2 802 151 HOH HOH . D 4 HOH A 3 803 6 HOH HOH . D 4 HOH A 4 804 38 HOH HOH . D 4 HOH A 5 805 78 HOH HOH . D 4 HOH A 6 806 13 HOH HOH . D 4 HOH A 7 807 16 HOH HOH . D 4 HOH A 8 808 2 HOH HOH . D 4 HOH A 9 809 155 HOH HOH . D 4 HOH A 10 810 100 HOH HOH . D 4 HOH A 11 811 4 HOH HOH . D 4 HOH A 12 812 107 HOH HOH . D 4 HOH A 13 813 98 HOH HOH . D 4 HOH A 14 814 25 HOH HOH . D 4 HOH A 15 815 56 HOH HOH . D 4 HOH A 16 816 26 HOH HOH . D 4 HOH A 17 817 116 HOH HOH . D 4 HOH A 18 818 8 HOH HOH . D 4 HOH A 19 819 94 HOH HOH . D 4 HOH A 20 820 30 HOH HOH . D 4 HOH A 21 821 148 HOH HOH . D 4 HOH A 22 822 75 HOH HOH . D 4 HOH A 23 823 103 HOH HOH . D 4 HOH A 24 824 28 HOH HOH . D 4 HOH A 25 825 118 HOH HOH . D 4 HOH A 26 826 39 HOH HOH . D 4 HOH A 27 827 32 HOH HOH . D 4 HOH A 28 828 49 HOH HOH . D 4 HOH A 29 829 90 HOH HOH . D 4 HOH A 30 830 20 HOH HOH . D 4 HOH A 31 831 93 HOH HOH . D 4 HOH A 32 832 11 HOH HOH . D 4 HOH A 33 833 128 HOH HOH . D 4 HOH A 34 834 23 HOH HOH . D 4 HOH A 35 835 12 HOH HOH . D 4 HOH A 36 836 10 HOH HOH . D 4 HOH A 37 837 76 HOH HOH . D 4 HOH A 38 838 19 HOH HOH . D 4 HOH A 39 839 14 HOH HOH . D 4 HOH A 40 840 102 HOH HOH . D 4 HOH A 41 841 117 HOH HOH . D 4 HOH A 42 842 7 HOH HOH . D 4 HOH A 43 843 35 HOH HOH . D 4 HOH A 44 844 29 HOH HOH . D 4 HOH A 45 845 22 HOH HOH . D 4 HOH A 46 846 44 HOH HOH . D 4 HOH A 47 847 5 HOH HOH . D 4 HOH A 48 848 139 HOH HOH . D 4 HOH A 49 849 81 HOH HOH . D 4 HOH A 50 850 119 HOH HOH . D 4 HOH A 51 851 53 HOH HOH . D 4 HOH A 52 852 96 HOH HOH . D 4 HOH A 53 853 33 HOH HOH . D 4 HOH A 54 854 109 HOH HOH . D 4 HOH A 55 855 17 HOH HOH . D 4 HOH A 56 856 140 HOH HOH . D 4 HOH A 57 857 72 HOH HOH . D 4 HOH A 58 858 47 HOH HOH . D 4 HOH A 59 859 18 HOH HOH . D 4 HOH A 60 860 21 HOH HOH . D 4 HOH A 61 861 108 HOH HOH . D 4 HOH A 62 862 129 HOH HOH . D 4 HOH A 63 863 58 HOH HOH . D 4 HOH A 64 864 112 HOH HOH . D 4 HOH A 65 865 36 HOH HOH . D 4 HOH A 66 866 92 HOH HOH . D 4 HOH A 67 867 50 HOH HOH . D 4 HOH A 68 868 3 HOH HOH . D 4 HOH A 69 869 31 HOH HOH . D 4 HOH A 70 870 79 HOH HOH . D 4 HOH A 71 871 136 HOH HOH . D 4 HOH A 72 872 85 HOH HOH . D 4 HOH A 73 873 104 HOH HOH . D 4 HOH A 74 874 138 HOH HOH . D 4 HOH A 75 875 52 HOH HOH . D 4 HOH A 76 876 61 HOH HOH . D 4 HOH A 77 877 45 HOH HOH . D 4 HOH A 78 878 54 HOH HOH . D 4 HOH A 79 879 115 HOH HOH . D 4 HOH A 80 880 41 HOH HOH . D 4 HOH A 81 881 64 HOH HOH . D 4 HOH A 82 882 97 HOH HOH . D 4 HOH A 83 883 137 HOH HOH . D 4 HOH A 84 884 51 HOH HOH . D 4 HOH A 85 885 101 HOH HOH . D 4 HOH A 86 886 111 HOH HOH . D 4 HOH A 87 887 84 HOH HOH . D 4 HOH A 88 888 27 HOH HOH . D 4 HOH A 89 889 135 HOH HOH . D 4 HOH A 90 890 24 HOH HOH . D 4 HOH A 91 891 9 HOH HOH . D 4 HOH A 92 892 88 HOH HOH . D 4 HOH A 93 893 91 HOH HOH . D 4 HOH A 94 894 15 HOH HOH . D 4 HOH A 95 895 133 HOH HOH . D 4 HOH A 96 896 141 HOH HOH . D 4 HOH A 97 897 82 HOH HOH . D 4 HOH A 98 898 43 HOH HOH . D 4 HOH A 99 899 63 HOH HOH . D 4 HOH A 100 900 126 HOH HOH . D 4 HOH A 101 901 110 HOH HOH . D 4 HOH A 102 902 74 HOH HOH . D 4 HOH A 103 903 95 HOH HOH . D 4 HOH A 104 904 46 HOH HOH . D 4 HOH A 105 905 55 HOH HOH . D 4 HOH A 106 906 48 HOH HOH . D 4 HOH A 107 907 99 HOH HOH . D 4 HOH A 108 908 65 HOH HOH . D 4 HOH A 109 909 57 HOH HOH . D 4 HOH A 110 910 59 HOH HOH . D 4 HOH A 111 911 83 HOH HOH . D 4 HOH A 112 912 150 HOH HOH . D 4 HOH A 113 913 34 HOH HOH . D 4 HOH A 114 914 40 HOH HOH . D 4 HOH A 115 915 42 HOH HOH . D 4 HOH A 116 916 60 HOH HOH . D 4 HOH A 117 917 123 HOH HOH . D 4 HOH A 118 918 125 HOH HOH . D 4 HOH A 119 919 147 HOH HOH . D 4 HOH A 120 920 71 HOH HOH . D 4 HOH A 121 921 122 HOH HOH . D 4 HOH A 122 922 37 HOH HOH . D 4 HOH A 123 923 86 HOH HOH . D 4 HOH A 124 924 154 HOH HOH . D 4 HOH A 125 925 130 HOH HOH . D 4 HOH A 126 926 106 HOH HOH . D 4 HOH A 127 927 156 HOH HOH . D 4 HOH A 128 928 73 HOH HOH . D 4 HOH A 129 929 153 HOH HOH . D 4 HOH A 130 930 149 HOH HOH . D 4 HOH A 131 931 105 HOH HOH . D 4 HOH A 132 932 134 HOH HOH . D 4 HOH A 133 933 132 HOH HOH . D 4 HOH A 134 934 67 HOH HOH . D 4 HOH A 135 935 77 HOH HOH . D 4 HOH A 136 936 158 HOH HOH . D 4 HOH A 137 937 145 HOH HOH . D 4 HOH A 138 938 157 HOH HOH . D 4 HOH A 139 939 62 HOH HOH . D 4 HOH A 140 940 1 HOH HOH . D 4 HOH A 141 941 142 HOH HOH . D 4 HOH A 142 942 144 HOH HOH . D 4 HOH A 143 943 66 HOH HOH . D 4 HOH A 144 944 69 HOH HOH . D 4 HOH A 145 945 143 HOH HOH . D 4 HOH A 146 946 89 HOH HOH . D 4 HOH A 147 947 80 HOH HOH . D 4 HOH A 148 948 68 HOH HOH . D 4 HOH A 149 949 152 HOH HOH . D 4 HOH A 150 950 124 HOH HOH . D 4 HOH A 151 951 114 HOH HOH . D 4 HOH A 152 952 146 HOH HOH . D 4 HOH A 153 953 121 HOH HOH . D 4 HOH A 154 954 120 HOH HOH . D 4 HOH A 155 955 131 HOH HOH . D 4 HOH A 156 956 87 HOH HOH . D 4 HOH A 157 957 70 HOH HOH . D 4 HOH A 158 958 113 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG GTP . . . B 2 -37.947 21.179 92.145 1 51.46 ? PG GTP 701 A 1 HETATM 2 O O1G GTP . . . B 2 -39.013 20.613 91.218 1 35.38 ? O1G GTP 701 A 1 HETATM 3 O O2G GTP . . . B 2 -37.921 22.684 91.998 1 56.24 ? O2G GTP 701 A 1 HETATM 4 O O3G GTP . . . B 2 -38.293 20.78 93.573 1 52.66 ? O3G GTP 701 A 1 HETATM 5 O O3B GTP . . . B 2 -36.455 20.638 91.822 1 26.04 ? O3B GTP 701 A 1 HETATM 6 P PB GTP . . . B 2 -36.101 19.15 91.364 1 24.84 ? PB GTP 701 A 1 HETATM 7 O O1B GTP . . . B 2 -37.238 18.449 90.715 1 25.66 ? O1B GTP 701 A 1 HETATM 8 O O2B GTP . . . B 2 -35.48 18.378 92.524 1 24.35 ? O2B GTP 701 A 1 HETATM 9 O O3A GTP . . . B 2 -34.864 19.312 90.312 1 25.56 ? O3A GTP 701 A 1 HETATM 10 P PA GTP . . . B 2 -34.98 19.268 88.729 1 25.34 ? PA GTP 701 A 1 HETATM 11 O O1A GTP . . . B 2 -35.007 17.835 88.221 1 23.33 ? O1A GTP 701 A 1 HETATM 12 O O2A GTP . . . B 2 -36.163 20.066 88.229 1 28.08 ? O2A GTP 701 A 1 HETATM 13 O O5' GTP . . . B 2 -33.605 19.961 88.282 1 21.32 ? O5' GTP 701 A 1 HETATM 14 C C5' GTP . . . B 2 -33.392 21.347 88.499 1 21.61 ? C5' GTP 701 A 1 HETATM 15 C C4' GTP . . . B 2 -32.611 21.9 87.311 1 21.52 ? C4' GTP 701 A 1 HETATM 16 O O4' GTP . . . B 2 -31.341 21.271 87.32 1 23.29 ? O4' GTP 701 A 1 HETATM 17 C C3' GTP . . . B 2 -33.23 21.622 85.946 1 28.17 ? C3' GTP 701 A 1 HETATM 18 O O3' GTP . . . B 2 -32.952 22.764 85.145 1 27.06 ? O3' GTP 701 A 1 HETATM 19 C C2' GTP . . . B 2 -32.443 20.414 85.454 1 27.82 ? C2' GTP 701 A 1 HETATM 20 O O2' GTP . . . B 2 -32.37 20.332 84.047 1 25.8 ? O2' GTP 701 A 1 HETATM 21 C C1' GTP . . . B 2 -31.076 20.63 86.089 1 20.45 ? C1' GTP 701 A 1 HETATM 22 N N9 GTP . . . B 2 -30.356 19.398 86.436 1 24.47 ? N9 GTP 701 A 1 HETATM 23 C C8 GTP . . . B 2 -30.872 18.212 86.921 1 24.33 ? C8 GTP 701 A 1 HETATM 24 N N7 GTP . . . B 2 -29.841 17.353 87.113 1 22.93 ? N7 GTP 701 A 1 HETATM 25 C C5 GTP . . . B 2 -28.686 17.975 86.769 1 24.44 ? C5 GTP 701 A 1 HETATM 26 C C6 GTP . . . B 2 -27.36 17.578 86.769 1 29.48 ? C6 GTP 701 A 1 HETATM 27 O O6 GTP . . . B 2 -27.023 16.445 87.143 1 23.33 ? O6 GTP 701 A 1 HETATM 28 N N1 GTP . . . B 2 -26.399 18.48 86.343 1 24.27 ? N1 GTP 701 A 1 HETATM 29 C C2 GTP . . . B 2 -26.731 19.745 85.929 1 28.92 ? C2 GTP 701 A 1 HETATM 30 N N2 GTP . . . B 2 -25.78 20.591 85.53 1 28.76 ? N2 GTP 701 A 1 HETATM 31 N N3 GTP . . . B 2 -28.045 20.132 85.937 1 26.46 ? N3 GTP 701 A 1 HETATM 32 C C4 GTP . . . B 2 -29.003 19.262 86.352 1 26.69 ? C4 GTP 701 A 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 30 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 329 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 32 #