data_6U0M # _model_server_result.job_id OV_xPbSeSke9pYwr3evi6Q _model_server_result.datetime_utc '2025-02-05 08:39:24' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6u0m # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"O","auth_seq_id":1001}' # _entry.id 6U0M # _exptl.entry_id 6U0M _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 507.181 _entity.id 14 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-5'-TRIPHOSPHATE" _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6U0M _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 6U0M _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details tridecameric _pdbx_struct_assembly.oligomeric_count 13 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 14 N N N ? 14 O N N ? 14 P N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order hydrog WATSON-CRICK hydrog1 L N1 DG 1 F DG 4 1_555 M N3 DC 12 G DC 15 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog2 L N2 DG 1 F DG 4 1_555 M O2 DC 12 G DC 15 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog3 L O6 DG 1 F DG 4 1_555 M N4 DC 12 G DC 15 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog4 L N1 DA 2 F DA 5 1_555 M N3 DT 11 G DT 14 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog5 L N6 DA 2 F DA 5 1_555 M O4 DT 11 G DT 14 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog6 L N3 DT 3 F DT 6 1_555 M N1 DA 10 G DA 13 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog7 L O4 DT 3 F DT 6 1_555 M N6 DA 10 G DA 13 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog8 L N3 DC 4 F DC 7 1_555 M N1 DG 9 G DG 12 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog9 L N4 DC 4 F DC 7 1_555 M O6 DG 9 G DG 12 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog10 L O2 DC 4 F DC 7 1_555 M N2 DG 9 G DG 12 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog11 L N1 DG 5 F DG 8 1_555 M N3 DC 8 G DC 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog12 L N2 DG 5 F DG 8 1_555 M O2 DC 8 G DC 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog13 L O6 DG 5 F DG 8 1_555 M N4 DC 8 G DC 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog14 L N1 DA 6 F DA 9 1_555 M N3 DT 7 G DT 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog15 L N6 DA 6 F DA 9 1_555 M O4 DT 7 G DT 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog16 L N3 DT 7 F DT 10 1_555 M N1 DA 6 G DA 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog17 L O4 DT 7 F DT 10 1_555 M N6 DA 6 G DA 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog18 L N3 DC 8 F DC 11 1_555 M N1 DG 5 G DG 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog19 L N4 DC 8 F DC 11 1_555 M O6 DG 5 G DG 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog20 L O2 DC 8 F DC 11 1_555 M N2 DG 5 G DG 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog21 L N1 DG 9 F DG 12 1_555 M N3 DC 4 G DC 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog22 L N2 DG 9 F DG 12 1_555 M O2 DC 4 G DC 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog23 L O6 DG 9 F DG 12 1_555 M N4 DC 4 G DC 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog24 L N1 DA 10 F DA 13 1_555 M N3 DT 3 G DT 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog25 L N6 DA 10 F DA 13 1_555 M O4 DT 3 G DT 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog26 L N3 DT 11 F DT 14 1_555 M N1 DA 2 G DA 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog27 L O4 DT 11 F DT 14 1_555 M N6 DA 2 G DA 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? # _chem_comp.formula 'C10 H16 N5 O13 P3' _chem_comp.formula_weight 507.181 _chem_comp.id ATP _chem_comp.mon_nstd_flag . _chem_comp.name "ADENOSINE-5'-TRIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G ATP doub 70 n n PG O2G ATP sing 71 n n PG O3G ATP sing 72 n n PG O3B ATP sing 73 n n O2G HOG2 ATP sing 74 n n O3G HOG3 ATP sing 75 n n PB O1B ATP doub 76 n n PB O2B ATP sing 77 n n PB O3B ATP sing 78 n n PB O3A ATP sing 79 n n O2B HOB2 ATP sing 80 n n PA O1A ATP doub 81 n n PA O2A ATP sing 82 n n PA O3A ATP sing 83 n n PA O5' ATP sing 84 n n O2A HOA2 ATP sing 85 n n O5' C5' ATP sing 86 n n C5' C4' ATP sing 87 n n C5' "H5'1" ATP sing 88 n n C5' "H5'2" ATP sing 89 n n C4' O4' ATP sing 90 n n C4' C3' ATP sing 91 n n C4' H4' ATP sing 92 n n O4' C1' ATP sing 93 n n C3' O3' ATP sing 94 n n C3' C2' ATP sing 95 n n C3' H3' ATP sing 96 n n O3' HO3' ATP sing 97 n n C2' O2' ATP sing 98 n n C2' C1' ATP sing 99 n n C2' H2' ATP sing 100 n n O2' HO2' ATP sing 101 n n C1' N9 ATP sing 102 n n C1' H1' ATP sing 103 n n N9 C8 ATP sing 104 n y N9 C4 ATP sing 105 n y C8 N7 ATP doub 106 n y C8 H8 ATP sing 107 n n N7 C5 ATP sing 108 n y C5 C6 ATP sing 109 n y C5 C4 ATP doub 110 n y C6 N6 ATP sing 111 n n C6 N1 ATP doub 112 n y N6 HN61 ATP sing 113 n n N6 HN62 ATP sing 114 n n N1 C2 ATP sing 115 n y C2 N3 ATP doub 116 n y C2 H2 ATP sing 117 n n N3 C4 ATP sing 118 n y # _atom_sites.entry_id 6U0M _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code N 14 ATP 2 1 901 901 ATP ATP . O 14 ATP 3 1 1001 1001 ATP ATP . P 14 ATP 5 1 801 801 ATP ATP . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG ATP . . . O 14 147.888 146.963 167.35 1 152.38 ? PG ATP 1001 3 1 HETATM 2 O O1G ATP . . . O 14 147.588 145.491 167.461 1 152.38 ? O1G ATP 1001 3 1 HETATM 3 O O2G ATP . . . O 14 147.932 147.483 165.938 1 152.38 ? O2G ATP 1001 3 1 HETATM 4 O O3G ATP . . . O 14 147.11 147.815 168.313 1 152.38 ? O3G ATP 1001 3 1 HETATM 5 P PB ATP . . . O 14 150.428 145.956 167.469 1 152.38 ? PB ATP 1001 3 1 HETATM 6 O O1B ATP . . . O 14 150.104 145.524 166.065 1 152.38 ? O1B ATP 1001 3 1 HETATM 7 O O2B ATP . . . O 14 150.45 144.936 168.575 1 152.38 ? O2B ATP 1001 3 1 HETATM 8 O O3B ATP . . . O 14 149.4 147.116 167.863 1 152.38 ? O3B ATP 1001 3 1 HETATM 9 P PA ATP . . . O 14 152.968 145.822 166.596 1 152.38 ? PA ATP 1001 3 1 HETATM 10 O O1A ATP . . . O 14 152.755 146.144 165.14 1 152.38 ? O1A ATP 1001 3 1 HETATM 11 O O2A ATP . . . O 14 152.894 144.392 167.064 1 152.38 ? O2A ATP 1001 3 1 HETATM 12 O O3A ATP . . . O 14 151.874 146.648 167.43 1 152.38 ? O3A ATP 1001 3 1 HETATM 13 O O5' ATP . . . O 14 154.403 146.441 166.969 1 152.38 ? O5' ATP 1001 3 1 HETATM 14 C C5' ATP . . . O 14 155.454 146.221 166.027 1 152.38 ? C5' ATP 1001 3 1 HETATM 15 C C4' ATP . . . O 14 156.788 146.794 166.488 1 152.38 ? C4' ATP 1001 3 1 HETATM 16 O O4' ATP . . . O 14 156.628 147.665 167.608 1 152.38 ? O4' ATP 1001 3 1 HETATM 17 C C3' ATP . . . O 14 157.728 145.68 166.908 1 152.38 ? C3' ATP 1001 3 1 HETATM 18 O O3' ATP . . . O 14 158.858 145.654 166.037 1 152.38 ? O3' ATP 1001 3 1 HETATM 19 C C2' ATP . . . O 14 158.173 146.028 168.309 1 152.38 ? C2' ATP 1001 3 1 HETATM 20 O O2' ATP . . . O 14 159.598 146.045 168.387 1 152.38 ? O2' ATP 1001 3 1 HETATM 21 C C1' ATP . . . O 14 157.636 147.418 168.587 1 152.38 ? C1' ATP 1001 3 1 HETATM 22 N N9 ATP . . . O 14 156.999 147.467 169.918 1 152.38 ? N9 ATP 1001 3 1 HETATM 23 C C8 ATP . . . O 14 155.718 147.808 170.128 1 152.38 ? C8 ATP 1001 3 1 HETATM 24 N N7 ATP . . . O 14 155.415 147.776 171.446 1 152.38 ? N7 ATP 1001 3 1 HETATM 25 C C5 ATP . . . O 14 156.525 147.4 172.098 1 152.38 ? C5 ATP 1001 3 1 HETATM 26 C C6 ATP . . . O 14 156.889 147.167 173.509 1 152.38 ? C6 ATP 1001 3 1 HETATM 27 N N6 ATP . . . O 14 155.979 147.331 174.496 1 152.38 ? N6 ATP 1001 3 1 HETATM 28 N N1 ATP . . . O 14 158.153 146.789 173.778 1 152.38 ? N1 ATP 1001 3 1 HETATM 29 C C2 ATP . . . O 14 159.061 146.624 172.803 1 152.38 ? C2 ATP 1001 3 1 HETATM 30 N N3 ATP . . . O 14 158.799 146.819 171.502 1 152.38 ? N3 ATP 1001 3 1 HETATM 31 C C4 ATP . . . O 14 157.571 147.2 171.09 1 152.38 ? C4 ATP 1001 3 1 # _model_server_stats.io_time_ms 121 _model_server_stats.parse_time_ms 27 _model_server_stats.create_model_time_ms 34 _model_server_stats.query_time_ms 331 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 31 #