data_6U0W
#
_model_server_result.job_id            GKaYX6S7Lo3mPpFt24VpkA 
_model_server_result.datetime_utc      '2024-12-26 10:25:58' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6u0w 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":202}' 
#
_entry.id    6U0W 
#
_exptl.entry_id    6U0W 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              402.188 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "THYMIDINE-3',5'-DIPHOSPHATE" 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          93.02 
_cell.angle_gamma         90 
_cell.entry_id            6U0W 
_cell.length_a            30.927 
_cell.length_b            60.473 
_cell.length_c            38.105 
_cell.Z_PDB               2 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6U0W 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A OD2 ASP 21 A ASP 21 1_555 B CA CA . A CA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.902 ? 
metalc ? metalc2 A OD1 ASP 40 A ASP 40 1_555 B CA CA . A CA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.77 ? 
metalc ? metalc3 A O THR 41 A THR 41 1_555 B CA CA . A CA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.752 ? 
metalc ? metalc4 A OE2 GLU 43 A GLU 43 1_555 B CA CA . A CA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.916 ? 
metalc ? metalc5 B CA CA . A CA 201 1_555 D O HOH . A HOH 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.904 ? 
metalc ? metalc6 B CA CA . A CA 201 1_555 D O HOH . A HOH 320 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.789 ? 
metalc ? metalc7 B CA CA . A CA 201 1_555 D O HOH . A HOH 323 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.908 ? 
#
_chem_comp.formula           'C10 H16 N2 O11 P2' 
_chem_comp.formula_weight    402.188 
_chem_comp.id                THP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              "THYMIDINE-3',5'-DIPHOSPHATE" 
_chem_comp.type              'dna linking' 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
P2 O4P THP doub 277 n n 
P2 O5P THP sing 278 n n 
P2 O6P THP sing 279 n n 
P2 O5' THP sing 280 n n 
O5P HOP5 THP sing 281 n n 
O6P HOP6 THP sing 282 n n 
P1 O1P THP doub 283 n n 
P1 O2P THP sing 284 n n 
P1 O3P THP sing 285 n n 
P1 O3' THP sing 286 n n 
O2P HOP2 THP sing 287 n n 
O3P HOP3 THP sing 288 n n 
O5' C5' THP sing 289 n n 
C5' C4' THP sing 290 n n 
C5' "H5'1" THP sing 291 n n 
C5' "H5'2" THP sing 292 n n 
C4' O4' THP sing 293 n n 
C4' C3' THP sing 294 n n 
C4' H4' THP sing 295 n n 
O4' C1' THP sing 296 n n 
C3' O3' THP sing 297 n n 
C3' C2' THP sing 298 n n 
C3' H3' THP sing 299 n n 
C2' C1' THP sing 300 n n 
C2' "H2'1" THP sing 301 n n 
C2' "H2'2" THP sing 302 n n 
C1' N1 THP sing 303 n n 
C1' H1' THP sing 304 n n 
N1 C2 THP sing 305 n n 
N1 C6 THP sing 306 n n 
C2 O2 THP doub 307 n n 
C2 N3 THP sing 308 n n 
N3 C4 THP sing 309 n n 
N3 H3 THP sing 310 n n 
C4 O4 THP doub 311 n n 
C4 C5 THP sing 312 n n 
C5 C5M THP sing 313 n n 
C5 C6 THP doub 314 n n 
C5M H51 THP sing 315 n n 
C5M H52 THP sing 316 n n 
C5M H53 THP sing 317 n n 
C6 H6 THP sing 318 n n 
#
_atom_sites.entry_id                     6U0W 
_atom_sites.fract_transf_matrix[1][1]    0.032334 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.001704 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.016536 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.02628 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 CA A 1 201 201 CA CA . 
C 3 THP A 1 202 202 THP THP . 
D 4 HOH A 1 301 301 HOH HOH . 
D 4 HOH A 2 302 302 HOH HOH . 
D 4 HOH A 3 303 304 HOH HOH . 
D 4 HOH A 4 304 303 HOH HOH . 
D 4 HOH A 5 305 307 HOH HOH . 
D 4 HOH A 6 306 305 HOH HOH . 
D 4 HOH A 7 307 306 HOH HOH . 
D 4 HOH A 8 308 308 HOH HOH . 
D 4 HOH A 9 309 309 HOH HOH . 
D 4 HOH A 10 310 311 HOH HOH . 
D 4 HOH A 11 311 317 HOH HOH . 
D 4 HOH A 12 312 312 HOH HOH . 
D 4 HOH A 13 313 313 HOH HOH . 
D 4 HOH A 14 314 310 HOH HOH . 
D 4 HOH A 15 315 315 HOH HOH . 
D 4 HOH A 16 316 316 HOH HOH . 
D 4 HOH A 17 317 323 HOH HOH . 
D 4 HOH A 18 318 321 HOH HOH . 
D 4 HOH A 19 319 322 HOH HOH . 
D 4 HOH A 20 320 319 HOH HOH . 
D 4 HOH A 21 321 314 HOH HOH . 
D 4 HOH A 22 322 318 HOH HOH . 
D 4 HOH A 23 323 327 HOH HOH . 
D 4 HOH A 24 324 320 HOH HOH . 
D 4 HOH A 25 325 338 HOH HOH . 
D 4 HOH A 26 326 326 HOH HOH . 
D 4 HOH A 27 327 325 HOH HOH . 
D 4 HOH A 28 328 328 HOH HOH . 
D 4 HOH A 29 329 332 HOH HOH . 
D 4 HOH A 30 330 331 HOH HOH . 
D 4 HOH A 31 331 336 HOH HOH . 
D 4 HOH A 32 332 329 HOH HOH . 
D 4 HOH A 33 333 330 HOH HOH . 
D 4 HOH A 34 334 333 HOH HOH . 
D 4 HOH A 35 335 324 HOH HOH . 
D 4 HOH A 36 336 337 HOH HOH . 
D 4 HOH A 37 337 335 HOH HOH . 
D 4 HOH A 38 338 339 HOH HOH . 
D 4 HOH A 39 339 334 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P P2 THP . . . C 3 17.882 11.182 4.43 1 30.62 ? P2 THP 202 A 1 
HETATM 2 O O4P THP . . . C 3 19.213 11.787 4.758 1 34.07 ? O4P THP 202 A 1 
HETATM 3 O O5P THP . . . C 3 17.739 9.714 4.806 1 28.33 ? O5P THP 202 A 1 
HETATM 4 O O6P THP . . . C 3 16.705 12.014 4.851 1 31.46 ? O6P THP 202 A 1 
HETATM 5 P P1 THP . . . C 3 20.886 14.738 0.126 1 44.62 ? P1 THP 202 A 1 
HETATM 6 O O1P THP . . . C 3 21.692 15.25 -1.034 1 56.54 ? O1P THP 202 A 1 
HETATM 7 O O2P THP . . . C 3 21.608 13.797 1.062 1 51.82 ? O2P THP 202 A 1 
HETATM 8 O O3P THP . . . C 3 20.175 15.822 0.878 1 47.28 ? O3P THP 202 A 1 
HETATM 9 O O5' THP . . . C 3 17.819 11.243 2.83 1 31.23 ? O5' THP 202 A 1 
HETATM 10 C C5' THP . . . C 3 17.999 12.485 2.143 1 33.56 ? C5' THP 202 A 1 
HETATM 11 C C4' THP . . . C 3 18.775 12.281 0.823 1 33.24 ? C4' THP 202 A 1 
HETATM 12 O O4' THP . . . C 3 18.318 11.13 0.132 1 35.78 ? O4' THP 202 A 1 
HETATM 13 C C3' THP . . . C 3 18.566 13.45 -0.133 1 37.89 ? C3' THP 202 A 1 
HETATM 14 O O3' THP . . . C 3 19.823 13.862 -0.703 1 44.32 ? O3' THP 202 A 1 
HETATM 15 C C2' THP . . . C 3 17.671 12.936 -1.248 1 36.17 ? C2' THP 202 A 1 
HETATM 16 C C1' THP . . . C 3 17.84 11.42 -1.19 1 36.77 ? C1' THP 202 A 1 
HETATM 17 N N1 THP . . . C 3 16.536 10.815 -1.48 1 39.55 ? N1 THP 202 A 1 
HETATM 18 C C2 THP . . . C 3 16.218 10.417 -2.813 1 42.19 ? C2 THP 202 A 1 
HETATM 19 O O2 THP . . . C 3 17.049 10.556 -3.731 1 44.41 ? O2 THP 202 A 1 
HETATM 20 N N3 THP . . . C 3 15.018 9.891 -3.131 1 41.29 ? N3 THP 202 A 1 
HETATM 21 C C4 THP . . . C 3 14.062 9.718 -2.198 1 40 ? C4 THP 202 A 1 
HETATM 22 O O4 THP . . . C 3 12.985 9.213 -2.542 1 41.1 ? O4 THP 202 A 1 
HETATM 23 C C5 THP . . . C 3 14.335 10.108 -0.785 1 39.54 ? C5 THP 202 A 1 
HETATM 24 C C5M THP . . . C 3 13.306 9.924 0.305 1 35.19 ? C5M THP 202 A 1 
HETATM 25 C C6 THP . . . C 3 15.598 10.664 -0.498 1 40.22 ? C6 THP 202 A 1 
#
_model_server_stats.io_time_ms              14 
_model_server_stats.parse_time_ms           32 
_model_server_stats.create_model_time_ms    2 
_model_server_stats.query_time_ms           310 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           25 
#