data_6U2Z # _model_server_result.job_id Lrj2gZ9uAsXGAu8o4XrlEQ _model_server_result.datetime_utc '2024-11-24 11:26:04' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6u2z # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":300}' # _entry.id 6U2Z # _exptl.entry_id 6U2Z _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 406.344 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(2R)-2-[(1R)-1-{[(2R)-2-carboxy-2-(4-hydroxyphenyl)acetyl]amino}-1-methoxy-2-oxoethyl]-5-methylidene-5,6-dihydro-2H-1,3 -oxazine-4-carboxylic acid' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 6U2Z _cell.length_a 104.234 _cell.length_b 104.234 _cell.length_c 98.793 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6U2Z _symmetry.cell_setting ? _symmetry.Int_Tables_number 181 _symmetry.space_group_name_Hall 'P 64 2 (x,y,z+1/6)' _symmetry.space_group_name_H-M 'P 64 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 4_665 -x+1,-y+1,z -1 0 0 0 -1 0 0 0 1 52.117 90.269292 0 3 'crystal symmetry operation' 7_555 y,x,-z+1/3 -0.5 0.866025 0 0.866025 0.5 0 0 0 -1 0 0 32.931 4 'crystal symmetry operation' 10_665 -y+1,-x+1,-z+1/3 0.5 -0.866025 0 -0.866025 -0.5 0 0 0 -1 52.117 90.269292 32.931 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 223 A CYS 239 1_555 A SG CYS 251 A CYS 267 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? metalc ? metalc1 A NE2 HIS 89 A HIS 105 1_555 D CU CU . A CU 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? metalc ? metalc2 A ND1 HIS 91 A HIS 107 1_555 D CU CU . A CU 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.184 ? metalc ? metalc3 A OD2 ASP 93 A ASP 109 1_555 C CU CU . A CU 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.317 ? metalc ? metalc4 A NE2 HIS 94 A HIS 110 1_555 C CU CU . A CU 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.075 ? metalc ? metalc5 A NE2 HIS 165 A HIS 181 1_555 D CU CU . A CU 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.207 ? metalc ? metalc6 A NE2 HIS 230 A HIS 246 1_555 C CU CU . A CU 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.229 ? metalc ? metalc7 B N8 3P7 . A 3P7 300 1_555 C CU CU . A CU 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.623 ? metalc ? metalc8 B O82 3P7 . A 3P7 300 1_555 C CU CU . A CU 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.332 ? metalc ? metalc9 C CU CU . A CU 301 1_555 F O HOH . A HOH 416 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.209 ? metalc ? metalc10 D CU CU . A CU 302 1_555 F O HOH . A HOH 416 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.079 ? # _chem_comp.formula 'C18 H18 N2 O9' _chem_comp.formula_weight 406.344 _chem_comp.id 3P7 _chem_comp.mon_nstd_flag . _chem_comp.name '(2R)-2-[(1R)-1-{[(2R)-2-carboxy-2-(4-hydroxyphenyl)acetyl]amino}-1-methoxy-2-oxoethyl]-5-methylidene-5,6-dihydro-2H-1,3 -oxazine-4-carboxylic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'MOXALACTAM DERIVATIVE (open form)' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O81 C8 3P7 doub 1 n n O82 C8 3P7 sing 2 n n C8 C7 3P7 sing 3 n n C9 C6 3P7 doub 4 n n C7 C6 3P7 sing 5 n n C7 N8 3P7 doub 6 n n C6 C5 3P7 sing 7 n n N8 C3 3P7 sing 8 n n C5 O4 3P7 sing 9 n n C3 O4 3P7 sing 10 n n C3 C2 3P7 sing 11 n n O1 C1 3P7 doub 12 n n C1 C2 3P7 sing 13 n n C2 O61 3P7 sing 14 n n C2 N2 3P7 sing 15 n n O61 C62 3P7 sing 16 n n N2 C21 3P7 sing 17 n n O26 C26 3P7 sing 18 n n C25 C26 3P7 doub 19 n y C25 C24 3P7 sing 20 n y C26 C27 3P7 sing 21 n y C21 O21 3P7 doub 22 n n C21 C22 3P7 sing 23 n n C24 C23 3P7 doub 24 n y C27 C28 3P7 doub 25 n y C28 C23 3P7 sing 26 n y C23 C22 3P7 sing 27 n n C22 C29 3P7 sing 28 n n O30 C29 3P7 doub 29 n n C29 O31 3P7 sing 30 n n N2 H1 3P7 sing 31 n n C3 H2 3P7 sing 32 n n C5 H3 3P7 sing 33 n n C5 H4 3P7 sing 34 n n C9 H6 3P7 sing 35 n n C9 H7 3P7 sing 36 n n C22 H9 3P7 sing 37 n n C24 H10 3P7 sing 38 n n C25 H11 3P7 sing 39 n n O26 H12 3P7 sing 40 n n C27 H13 3P7 sing 41 n n C28 H14 3P7 sing 42 n n O31 H15 3P7 sing 43 n n C62 H16 3P7 sing 44 n n C62 H17 3P7 sing 45 n n C62 H18 3P7 sing 46 n n O82 H19 3P7 sing 47 n n C1 H20 3P7 sing 48 n n # _atom_sites.entry_id 6U2Z _atom_sites.fract_transf_matrix[1][1] 0.009594 _atom_sites.fract_transf_matrix[1][2] 0.005539 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011078 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010122 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 3P7 A 1 300 300 3P7 JNK . C 3 CU A 1 301 301 CU CU . D 3 CU A 1 302 302 CU CU . E 4 EDO A 1 303 303 EDO EDO . F 5 HOH A 1 401 52 HOH HOH . F 5 HOH A 2 402 11 HOH HOH . F 5 HOH A 3 403 51 HOH HOH . F 5 HOH A 4 404 16 HOH HOH . F 5 HOH A 5 405 48 HOH HOH . F 5 HOH A 6 406 12 HOH HOH . F 5 HOH A 7 407 49 HOH HOH . F 5 HOH A 8 408 37 HOH HOH . F 5 HOH A 9 409 28 HOH HOH . F 5 HOH A 10 410 60 HOH HOH . F 5 HOH A 11 411 22 HOH HOH . F 5 HOH A 12 412 3 HOH HOH . F 5 HOH A 13 413 19 HOH HOH . F 5 HOH A 14 414 13 HOH HOH . F 5 HOH A 15 415 38 HOH HOH . F 5 HOH A 16 416 61 HOH HOH . F 5 HOH A 17 417 30 HOH HOH . F 5 HOH A 18 418 20 HOH HOH . F 5 HOH A 19 419 8 HOH HOH . F 5 HOH A 20 420 59 HOH HOH . F 5 HOH A 21 421 9 HOH HOH . F 5 HOH A 22 422 33 HOH HOH . F 5 HOH A 23 423 47 HOH HOH . F 5 HOH A 24 424 57 HOH HOH . F 5 HOH A 25 425 32 HOH HOH . F 5 HOH A 26 426 50 HOH HOH . F 5 HOH A 27 427 36 HOH HOH . F 5 HOH A 28 428 24 HOH HOH . F 5 HOH A 29 429 42 HOH HOH . F 5 HOH A 30 430 1 HOH HOH . F 5 HOH A 31 431 7 HOH HOH . F 5 HOH A 32 432 27 HOH HOH . F 5 HOH A 33 433 31 HOH HOH . F 5 HOH A 34 434 55 HOH HOH . F 5 HOH A 35 435 14 HOH HOH . F 5 HOH A 36 436 21 HOH HOH . F 5 HOH A 37 437 5 HOH HOH . F 5 HOH A 38 438 29 HOH HOH . F 5 HOH A 39 439 26 HOH HOH . F 5 HOH A 40 440 35 HOH HOH . F 5 HOH A 41 441 44 HOH HOH . F 5 HOH A 42 442 23 HOH HOH . F 5 HOH A 43 443 39 HOH HOH . F 5 HOH A 44 444 53 HOH HOH . F 5 HOH A 45 445 58 HOH HOH . F 5 HOH A 46 446 54 HOH HOH . F 5 HOH A 47 447 17 HOH HOH . F 5 HOH A 48 448 25 HOH HOH . F 5 HOH A 49 449 6 HOH HOH . F 5 HOH A 50 450 4 HOH HOH . F 5 HOH A 51 451 10 HOH HOH . F 5 HOH A 52 452 45 HOH HOH . F 5 HOH A 53 453 2 HOH HOH . F 5 HOH A 54 454 34 HOH HOH . F 5 HOH A 55 455 40 HOH HOH . F 5 HOH A 56 456 46 HOH HOH . F 5 HOH A 57 457 18 HOH HOH . F 5 HOH A 58 458 43 HOH HOH . F 5 HOH A 59 459 56 HOH HOH . F 5 HOH A 60 460 41 HOH HOH . F 5 HOH A 61 461 15 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 3P7 . . . B 2 17.953 26.63 0.91 1 55.54 ? C1 3P7 300 A 1 HETATM 2 O O1 3P7 . . . B 2 18.908 27.43 0.793 1 56.11 ? O1 3P7 300 A 1 HETATM 3 C C2 3P7 . . . B 2 18.087 25.443 1.83 1 54.83 ? C2 3P7 300 A 1 HETATM 4 N N2 3P7 . . . B 2 16.768 24.954 2.199 1 56.1 ? N2 3P7 300 A 1 HETATM 5 C C3 3P7 . . . B 2 18.868 24.33 1.127 1 51.58 ? C3 3P7 300 A 1 HETATM 6 O O4 3P7 . . . B 2 17.922 23.592 0.343 1 51.81 ? O4 3P7 300 A 1 HETATM 7 C C5 3P7 . . . B 2 18.485 22.889 -0.756 1 51.68 ? C5 3P7 300 A 1 HETATM 8 C C6 3P7 . . . B 2 19.154 23.941 -1.588 1 50 ? C6 3P7 300 A 1 HETATM 9 C C7 3P7 . . . B 2 20.133 24.769 -0.893 1 48.19 ? C7 3P7 300 A 1 HETATM 10 C C8 3P7 . . . B 2 21.249 25.47 -1.538 1 46.48 ? C8 3P7 300 A 1 HETATM 11 N N8 3P7 . . . B 2 19.995 24.879 0.36 1 48.16 ? N8 3P7 300 A 1 HETATM 12 C C9 3P7 . . . B 2 18.827 24.099 -2.858 1 48.99 ? C9 3P7 300 A 1 HETATM 13 C C21 3P7 . . . B 2 16.54 23.938 3.035 1 57.27 ? C21 3P7 300 A 1 HETATM 14 O O21 3P7 . . . B 2 17.405 23.404 3.712 1 53.99 ? O21 3P7 300 A 1 HETATM 15 C C22 3P7 . . . B 2 15.117 23.456 3.134 1 61.5 ? C22 3P7 300 A 1 HETATM 16 C C23 3P7 . . . B 2 14.379 24.211 4.176 1 62.82 ? C23 3P7 300 A 1 HETATM 17 C C24 3P7 . . . B 2 14.203 25.586 4.054 1 62.23 ? C24 3P7 300 A 1 HETATM 18 C C25 3P7 . . . B 2 13.508 26.288 5.033 1 61.74 ? C25 3P7 300 A 1 HETATM 19 C C26 3P7 . . . B 2 12.985 25.615 6.132 1 61.34 ? C26 3P7 300 A 1 HETATM 20 O O26 3P7 . . . B 2 12.304 26.302 7.089 1 59.73 ? O26 3P7 300 A 1 HETATM 21 C C27 3P7 . . . B 2 13.158 24.241 6.253 1 62.75 ? C27 3P7 300 A 1 HETATM 22 C C28 3P7 . . . B 2 13.854 23.539 5.275 1 63.31 ? C28 3P7 300 A 1 HETATM 23 C C29 3P7 . . . B 2 14.374 23.574 1.832 1 62.69 ? C29 3P7 300 A 1 HETATM 24 O O30 3P7 . . . B 2 14.788 24.374 0.963 1 63.21 ? O30 3P7 300 A 1 HETATM 25 O O31 3P7 . . . B 2 13.353 22.87 1.676 1 62.6 ? O31 3P7 300 A 1 HETATM 26 O O61 3P7 . . . B 2 18.783 25.848 3.011 1 54.92 ? O61 3P7 300 A 1 HETATM 27 C C62 3P7 . . . B 2 18.235 26.852 3.865 1 53.58 ? C62 3P7 300 A 1 HETATM 28 O O81 3P7 . . . B 2 21.386 25.451 -2.783 1 43.84 ? O81 3P7 300 A 1 HETATM 29 O O82 3P7 . . . B 2 22.058 26.085 -0.811 1 45.18 ? O82 3P7 300 A 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 370 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 29 #