data_6U2Z
#
_model_server_result.job_id            WxYqtK7YUhmMYNSu4GPRIA 
_model_server_result.datetime_utc      '2024-11-24 11:32:25' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6u2z 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"E","auth_seq_id":303}' 
#
_entry.id    6U2Z 
#
_exptl.entry_id    6U2Z 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              62.068 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            1,2-ETHANEDIOL 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            6U2Z 
_cell.length_a            104.234 
_cell.length_b            104.234 
_cell.length_c            98.793 
_cell.Z_PDB               12 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6U2Z 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        181 
_symmetry.space_group_name_Hall    'P 64 2 (x,y,z+1/6)' 
_symmetry.space_group_name_H-M     'P 64 2 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2,3,4 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 4_665 -x+1,-y+1,z -1 0 0 0 -1 0 0 0 1 52.117 90.269292 0 
3 'crystal symmetry operation' 7_555 y,x,-z+1/3 -0.5 0.866025 0 0.866025 0.5 0 0 0 -1 0 0 32.931 
4 'crystal symmetry operation' 10_665 -y+1,-x+1,-z+1/3 0.5 -0.866025 0 -0.866025 -0.5 0 0 0 -1 52.117 90.269292 32.931 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      4 
_struct_asym.id                             E 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 223 A CYS 239 1_555 A SG CYS 251 A CYS 267 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? 
metalc ? metalc1 A NE2 HIS 89 A HIS 105 1_555 D CU CU . A CU 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? 
metalc ? metalc2 A ND1 HIS 91 A HIS 107 1_555 D CU CU . A CU 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.184 ? 
metalc ? metalc3 A OD2 ASP 93 A ASP 109 1_555 C CU CU . A CU 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.317 ? 
metalc ? metalc4 A NE2 HIS 94 A HIS 110 1_555 C CU CU . A CU 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.075 ? 
metalc ? metalc5 A NE2 HIS 165 A HIS 181 1_555 D CU CU . A CU 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.207 ? 
metalc ? metalc6 A NE2 HIS 230 A HIS 246 1_555 C CU CU . A CU 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.229 ? 
metalc ? metalc7 B N8 3P7 . A 3P7 300 1_555 C CU CU . A CU 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.623 ? 
metalc ? metalc8 B O82 3P7 . A 3P7 300 1_555 C CU CU . A CU 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.332 ? 
metalc ? metalc9 C CU CU . A CU 301 1_555 F O HOH . A HOH 416 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.209 ? 
metalc ? metalc10 D CU CU . A CU 302 1_555 F O HOH . A HOH 416 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.079 ? 
#
_chem_comp.formula           'C2 H6 O2' 
_chem_comp.formula_weight    62.068 
_chem_comp.id                EDO 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              1,2-ETHANEDIOL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'ETHYLENE GLYCOL' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 EDO sing 131 n n 
C1 C2 EDO sing 132 n n 
C1 H11 EDO sing 133 n n 
C1 H12 EDO sing 134 n n 
O1 HO1 EDO sing 135 n n 
C2 O2 EDO sing 136 n n 
C2 H21 EDO sing 137 n n 
C2 H22 EDO sing 138 n n 
O2 HO2 EDO sing 139 n n 
#
_atom_sites.entry_id                     6U2Z 
_atom_sites.fract_transf_matrix[1][1]    0.009594 
_atom_sites.fract_transf_matrix[1][2]    0.005539 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.011078 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.010122 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 3P7 A 1 300 300 3P7 JNK . 
C 3 CU A 1 301 301 CU CU . 
D 3 CU A 1 302 302 CU CU . 
E 4 EDO A 1 303 303 EDO EDO . 
F 5 HOH A 1 401 52 HOH HOH . 
F 5 HOH A 2 402 11 HOH HOH . 
F 5 HOH A 3 403 51 HOH HOH . 
F 5 HOH A 4 404 16 HOH HOH . 
F 5 HOH A 5 405 48 HOH HOH . 
F 5 HOH A 6 406 12 HOH HOH . 
F 5 HOH A 7 407 49 HOH HOH . 
F 5 HOH A 8 408 37 HOH HOH . 
F 5 HOH A 9 409 28 HOH HOH . 
F 5 HOH A 10 410 60 HOH HOH . 
F 5 HOH A 11 411 22 HOH HOH . 
F 5 HOH A 12 412 3 HOH HOH . 
F 5 HOH A 13 413 19 HOH HOH . 
F 5 HOH A 14 414 13 HOH HOH . 
F 5 HOH A 15 415 38 HOH HOH . 
F 5 HOH A 16 416 61 HOH HOH . 
F 5 HOH A 17 417 30 HOH HOH . 
F 5 HOH A 18 418 20 HOH HOH . 
F 5 HOH A 19 419 8 HOH HOH . 
F 5 HOH A 20 420 59 HOH HOH . 
F 5 HOH A 21 421 9 HOH HOH . 
F 5 HOH A 22 422 33 HOH HOH . 
F 5 HOH A 23 423 47 HOH HOH . 
F 5 HOH A 24 424 57 HOH HOH . 
F 5 HOH A 25 425 32 HOH HOH . 
F 5 HOH A 26 426 50 HOH HOH . 
F 5 HOH A 27 427 36 HOH HOH . 
F 5 HOH A 28 428 24 HOH HOH . 
F 5 HOH A 29 429 42 HOH HOH . 
F 5 HOH A 30 430 1 HOH HOH . 
F 5 HOH A 31 431 7 HOH HOH . 
F 5 HOH A 32 432 27 HOH HOH . 
F 5 HOH A 33 433 31 HOH HOH . 
F 5 HOH A 34 434 55 HOH HOH . 
F 5 HOH A 35 435 14 HOH HOH . 
F 5 HOH A 36 436 21 HOH HOH . 
F 5 HOH A 37 437 5 HOH HOH . 
F 5 HOH A 38 438 29 HOH HOH . 
F 5 HOH A 39 439 26 HOH HOH . 
F 5 HOH A 40 440 35 HOH HOH . 
F 5 HOH A 41 441 44 HOH HOH . 
F 5 HOH A 42 442 23 HOH HOH . 
F 5 HOH A 43 443 39 HOH HOH . 
F 5 HOH A 44 444 53 HOH HOH . 
F 5 HOH A 45 445 58 HOH HOH . 
F 5 HOH A 46 446 54 HOH HOH . 
F 5 HOH A 47 447 17 HOH HOH . 
F 5 HOH A 48 448 25 HOH HOH . 
F 5 HOH A 49 449 6 HOH HOH . 
F 5 HOH A 50 450 4 HOH HOH . 
F 5 HOH A 51 451 10 HOH HOH . 
F 5 HOH A 52 452 45 HOH HOH . 
F 5 HOH A 53 453 2 HOH HOH . 
F 5 HOH A 54 454 34 HOH HOH . 
F 5 HOH A 55 455 40 HOH HOH . 
F 5 HOH A 56 456 46 HOH HOH . 
F 5 HOH A 57 457 18 HOH HOH . 
F 5 HOH A 58 458 43 HOH HOH . 
F 5 HOH A 59 459 56 HOH HOH . 
F 5 HOH A 60 460 41 HOH HOH . 
F 5 HOH A 61 461 15 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 EDO . . . E 4 18.561 36.307 2.597 1 49.26 ? C1 EDO 303 A 1 
HETATM 2 O O1 EDO . . . E 4 17.704 37.002 3.509 1 48.75 ? O1 EDO 303 A 1 
HETATM 3 C C2 EDO . . . E 4 17.812 36.054 1.295 1 47.66 ? C2 EDO 303 A 1 
HETATM 4 O O2 EDO . . . E 4 18.519 35.104 0.495 1 46.55 ? O2 EDO 303 A 1 
#
_model_server_stats.io_time_ms              0 
_model_server_stats.parse_time_ms           25 
_model_server_stats.create_model_time_ms    12 
_model_server_stats.query_time_ms           716 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           4 
#