data_6U34 # _model_server_result.job_id vOIPR3Kq0lUKqBSQAGKGPw _model_server_result.datetime_utc '2024-12-11 10:41:33' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6u34 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":603}' # _entry.id 6U34 # _exptl.entry_id 6U34 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 5 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 6U34 _cell.length_a 124.974 _cell.length_b 124.974 _cell.length_c 129.844 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6U34 _symmetry.cell_setting ? _symmetry.Int_Tables_number 144 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 31' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression B,G,H,I,J,K,M 1 1 A,C,D,E,F,L 1 2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_765 -y+2,x-y+1,z+1/3 -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 187.461 108.230659 43.281333 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N ? 2 G N N ? 2 H N N ? 2 I N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 72 A CYS 69 1_555 A SG CYS 99 A CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf2 A SG CYS 260 A CYS 257 1_555 A SG CYS 275 A CYS 272 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf3 A SG CYS 412 A CYS 409 1_555 A SG CYS 532 A CYS 529 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf4 B SG CYS 72 B CYS 69 1_555 B SG CYS 99 B CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf5 B SG CYS 260 B CYS 257 1_555 B SG CYS 275 B CYS 272 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf6 B SG CYS 412 B CYS 409 1_555 B SG CYS 532 B CYS 529 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 129 n n C1 C2 GOL sing 130 n n C1 H11 GOL sing 131 n n C1 H12 GOL sing 132 n n O1 HO1 GOL sing 133 n n C2 O2 GOL sing 134 n n C2 C3 GOL sing 135 n n C2 H2 GOL sing 136 n n O2 HO2 GOL sing 137 n n C3 O3 GOL sing 138 n n C3 H31 GOL sing 139 n n C3 H32 GOL sing 140 n n O3 HO3 GOL sing 141 n n # _atom_sites.entry_id 6U34 _atom_sites.fract_transf_matrix[1][1] 0.008002 _atom_sites.fract_transf_matrix[1][2] 0.00462 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.00924 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007702 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 GOL A 1 601 663 GOL GOL . D 2 GOL A 1 602 673 GOL GOL . E 3 PQV A 1 603 1 PQV DRG . F 4 NO3 A 1 604 609 NO3 NO3 . G 2 GOL B 1 601 665 GOL GOL . H 2 GOL B 1 602 670 GOL GOL . I 2 GOL B 1 603 674 GOL GOL . J 3 PQV B 1 604 2 PQV DRG . K 4 NO3 B 1 605 608 NO3 NO3 . L 5 HOH A 1 701 119 HOH HOH . L 5 HOH A 2 702 152 HOH HOH . L 5 HOH A 3 703 222 HOH HOH . L 5 HOH A 4 704 93 HOH HOH . L 5 HOH A 5 705 25 HOH HOH . L 5 HOH A 6 706 43 HOH HOH . L 5 HOH A 7 707 34 HOH HOH . L 5 HOH A 8 708 21 HOH HOH . L 5 HOH A 9 709 15 HOH HOH . L 5 HOH A 10 710 44 HOH HOH . L 5 HOH A 11 711 135 HOH HOH . L 5 HOH A 12 712 38 HOH HOH . L 5 HOH A 13 713 137 HOH HOH . L 5 HOH A 14 714 244 HOH HOH . L 5 HOH A 15 715 95 HOH HOH . L 5 HOH A 16 716 16 HOH HOH . L 5 HOH A 17 717 190 HOH HOH . L 5 HOH A 18 718 100 HOH HOH . L 5 HOH A 19 719 115 HOH HOH . L 5 HOH A 20 720 171 HOH HOH . L 5 HOH A 21 721 19 HOH HOH . L 5 HOH A 22 722 219 HOH HOH . L 5 HOH A 23 723 73 HOH HOH . L 5 HOH A 24 724 5 HOH HOH . L 5 HOH A 25 725 23 HOH HOH . L 5 HOH A 26 726 142 HOH HOH . L 5 HOH A 27 727 83 HOH HOH . L 5 HOH A 28 728 33 HOH HOH . L 5 HOH A 29 729 36 HOH HOH . L 5 HOH A 30 730 157 HOH HOH . L 5 HOH A 31 731 26 HOH HOH . L 5 HOH A 32 732 176 HOH HOH . L 5 HOH A 33 733 103 HOH HOH . L 5 HOH A 34 734 104 HOH HOH . L 5 HOH A 35 735 2 HOH HOH . L 5 HOH A 36 736 233 HOH HOH . L 5 HOH A 37 737 47 HOH HOH . L 5 HOH A 38 738 6 HOH HOH . L 5 HOH A 39 739 82 HOH HOH . L 5 HOH A 40 740 242 HOH HOH . L 5 HOH A 41 741 7 HOH HOH . L 5 HOH A 42 742 81 HOH HOH . L 5 HOH A 43 743 148 HOH HOH . L 5 HOH A 44 744 156 HOH HOH . L 5 HOH A 45 745 170 HOH HOH . L 5 HOH A 46 746 161 HOH HOH . L 5 HOH A 47 747 89 HOH HOH . L 5 HOH A 48 748 151 HOH HOH . L 5 HOH A 49 749 223 HOH HOH . L 5 HOH A 50 750 174 HOH HOH . L 5 HOH A 51 751 35 HOH HOH . L 5 HOH A 52 752 65 HOH HOH . L 5 HOH A 53 753 87 HOH HOH . L 5 HOH A 54 754 127 HOH HOH . L 5 HOH A 55 755 159 HOH HOH . L 5 HOH A 56 756 94 HOH HOH . L 5 HOH A 57 757 143 HOH HOH . L 5 HOH A 58 758 117 HOH HOH . L 5 HOH A 59 759 193 HOH HOH . L 5 HOH A 60 760 211 HOH HOH . L 5 HOH A 61 761 8 HOH HOH . L 5 HOH A 62 762 243 HOH HOH . L 5 HOH A 63 763 99 HOH HOH . L 5 HOH A 64 764 229 HOH HOH . L 5 HOH A 65 765 129 HOH HOH . L 5 HOH A 66 766 37 HOH HOH . L 5 HOH A 67 767 238 HOH HOH . L 5 HOH A 68 768 247 HOH HOH . L 5 HOH A 69 769 150 HOH HOH . L 5 HOH A 70 770 113 HOH HOH . L 5 HOH A 71 771 120 HOH HOH . L 5 HOH A 72 772 166 HOH HOH . L 5 HOH A 73 773 84 HOH HOH . L 5 HOH A 74 774 40 HOH HOH . L 5 HOH A 75 775 49 HOH HOH . L 5 HOH A 76 776 128 HOH HOH . L 5 HOH A 77 777 91 HOH HOH . L 5 HOH A 78 778 60 HOH HOH . L 5 HOH A 79 779 130 HOH HOH . L 5 HOH A 80 780 226 HOH HOH . L 5 HOH A 81 781 78 HOH HOH . L 5 HOH A 82 782 97 HOH HOH . L 5 HOH A 83 783 177 HOH HOH . L 5 HOH A 84 784 221 HOH HOH . L 5 HOH A 85 785 246 HOH HOH . L 5 HOH A 86 786 147 HOH HOH . L 5 HOH A 87 787 215 HOH HOH . L 5 HOH A 88 788 107 HOH HOH . L 5 HOH A 89 789 165 HOH HOH . L 5 HOH A 90 790 14 HOH HOH . L 5 HOH A 91 791 173 HOH HOH . L 5 HOH A 92 792 252 HOH HOH . L 5 HOH A 93 793 114 HOH HOH . L 5 HOH A 94 794 63 HOH HOH . L 5 HOH A 95 795 220 HOH HOH . L 5 HOH A 96 796 88 HOH HOH . L 5 HOH A 97 797 62 HOH HOH . L 5 HOH A 98 798 168 HOH HOH . L 5 HOH A 99 799 72 HOH HOH . L 5 HOH A 100 800 76 HOH HOH . L 5 HOH A 101 801 204 HOH HOH . L 5 HOH A 102 802 123 HOH HOH . L 5 HOH A 103 803 162 HOH HOH . L 5 HOH A 104 804 138 HOH HOH . L 5 HOH A 105 805 203 HOH HOH . L 5 HOH A 106 806 191 HOH HOH . L 5 HOH A 107 807 178 HOH HOH . L 5 HOH A 108 808 18 HOH HOH . L 5 HOH A 109 809 210 HOH HOH . L 5 HOH A 110 810 45 HOH HOH . L 5 HOH A 111 811 249 HOH HOH . L 5 HOH A 112 812 133 HOH HOH . L 5 HOH A 113 813 207 HOH HOH . L 5 HOH A 114 814 255 HOH HOH . L 5 HOH A 115 815 254 HOH HOH . L 5 HOH A 116 816 74 HOH HOH . L 5 HOH A 117 817 158 HOH HOH . L 5 HOH A 118 818 164 HOH HOH . L 5 HOH A 119 819 253 HOH HOH . L 5 HOH A 120 820 160 HOH HOH . L 5 HOH A 121 821 167 HOH HOH . L 5 HOH A 122 822 188 HOH HOH . L 5 HOH A 123 823 189 HOH HOH . L 5 HOH A 124 824 235 HOH HOH . L 5 HOH A 125 825 169 HOH HOH . L 5 HOH A 126 826 201 HOH HOH . L 5 HOH A 127 827 224 HOH HOH . M 5 HOH B 1 701 3 HOH HOH . M 5 HOH B 2 702 118 HOH HOH . M 5 HOH B 3 703 116 HOH HOH . M 5 HOH B 4 704 105 HOH HOH . M 5 HOH B 5 705 1 HOH HOH . M 5 HOH B 6 706 197 HOH HOH . M 5 HOH B 7 707 12 HOH HOH . M 5 HOH B 8 708 141 HOH HOH . M 5 HOH B 9 709 24 HOH HOH . M 5 HOH B 10 710 31 HOH HOH . M 5 HOH B 11 711 70 HOH HOH . M 5 HOH B 12 712 245 HOH HOH . M 5 HOH B 13 713 196 HOH HOH . M 5 HOH B 14 714 67 HOH HOH . M 5 HOH B 15 715 98 HOH HOH . M 5 HOH B 16 716 132 HOH HOH . M 5 HOH B 17 717 11 HOH HOH . M 5 HOH B 18 718 46 HOH HOH . M 5 HOH B 19 719 106 HOH HOH . M 5 HOH B 20 720 110 HOH HOH . M 5 HOH B 21 721 80 HOH HOH . M 5 HOH B 22 722 13 HOH HOH . M 5 HOH B 23 723 39 HOH HOH . M 5 HOH B 24 724 134 HOH HOH . M 5 HOH B 25 725 182 HOH HOH . M 5 HOH B 26 726 57 HOH HOH . M 5 HOH B 27 727 202 HOH HOH . M 5 HOH B 28 728 96 HOH HOH . M 5 HOH B 29 729 85 HOH HOH . M 5 HOH B 30 730 50 HOH HOH . M 5 HOH B 31 731 126 HOH HOH . M 5 HOH B 32 732 4 HOH HOH . M 5 HOH B 33 733 124 HOH HOH . M 5 HOH B 34 734 102 HOH HOH . M 5 HOH B 35 735 29 HOH HOH . M 5 HOH B 36 736 144 HOH HOH . M 5 HOH B 37 737 232 HOH HOH . M 5 HOH B 38 738 256 HOH HOH . M 5 HOH B 39 739 68 HOH HOH . M 5 HOH B 40 740 9 HOH HOH . M 5 HOH B 41 741 184 HOH HOH . M 5 HOH B 42 742 42 HOH HOH . M 5 HOH B 43 743 53 HOH HOH . M 5 HOH B 44 744 22 HOH HOH . M 5 HOH B 45 745 205 HOH HOH . M 5 HOH B 46 746 77 HOH HOH . M 5 HOH B 47 747 92 HOH HOH . M 5 HOH B 48 748 163 HOH HOH . M 5 HOH B 49 749 131 HOH HOH . M 5 HOH B 50 750 194 HOH HOH . M 5 HOH B 51 751 59 HOH HOH . M 5 HOH B 52 752 139 HOH HOH . M 5 HOH B 53 753 54 HOH HOH . M 5 HOH B 54 754 28 HOH HOH . M 5 HOH B 55 755 125 HOH HOH . M 5 HOH B 56 756 56 HOH HOH . M 5 HOH B 57 757 17 HOH HOH . M 5 HOH B 58 758 32 HOH HOH . M 5 HOH B 59 759 75 HOH HOH . M 5 HOH B 60 760 69 HOH HOH . M 5 HOH B 61 761 154 HOH HOH . M 5 HOH B 62 762 175 HOH HOH . M 5 HOH B 63 763 172 HOH HOH . M 5 HOH B 64 764 200 HOH HOH . M 5 HOH B 65 765 180 HOH HOH . M 5 HOH B 66 766 51 HOH HOH . M 5 HOH B 67 767 140 HOH HOH . M 5 HOH B 68 768 236 HOH HOH . M 5 HOH B 69 769 153 HOH HOH . M 5 HOH B 70 770 251 HOH HOH . M 5 HOH B 71 771 228 HOH HOH . M 5 HOH B 72 772 192 HOH HOH . M 5 HOH B 73 773 227 HOH HOH . M 5 HOH B 74 774 183 HOH HOH . M 5 HOH B 75 775 149 HOH HOH . M 5 HOH B 76 776 199 HOH HOH . M 5 HOH B 77 777 136 HOH HOH . M 5 HOH B 78 778 10 HOH HOH . M 5 HOH B 79 779 218 HOH HOH . M 5 HOH B 80 780 122 HOH HOH . M 5 HOH B 81 781 41 HOH HOH . M 5 HOH B 82 782 48 HOH HOH . M 5 HOH B 83 783 79 HOH HOH . M 5 HOH B 84 784 217 HOH HOH . M 5 HOH B 85 785 208 HOH HOH . M 5 HOH B 86 786 146 HOH HOH . M 5 HOH B 87 787 213 HOH HOH . M 5 HOH B 88 788 61 HOH HOH . M 5 HOH B 89 789 101 HOH HOH . M 5 HOH B 90 790 198 HOH HOH . M 5 HOH B 91 791 155 HOH HOH . M 5 HOH B 92 792 239 HOH HOH . M 5 HOH B 93 793 145 HOH HOH . M 5 HOH B 94 794 64 HOH HOH . M 5 HOH B 95 795 121 HOH HOH . M 5 HOH B 96 796 209 HOH HOH . M 5 HOH B 97 797 187 HOH HOH . M 5 HOH B 98 798 195 HOH HOH . M 5 HOH B 99 799 86 HOH HOH . M 5 HOH B 100 800 216 HOH HOH . M 5 HOH B 101 801 27 HOH HOH . M 5 HOH B 102 802 186 HOH HOH . M 5 HOH B 103 803 181 HOH HOH . M 5 HOH B 104 804 230 HOH HOH . M 5 HOH B 105 805 212 HOH HOH . M 5 HOH B 106 806 250 HOH HOH . M 5 HOH B 107 807 179 HOH HOH . M 5 HOH B 108 808 240 HOH HOH . M 5 HOH B 109 809 237 HOH HOH . M 5 HOH B 110 810 112 HOH HOH . M 5 HOH B 111 811 111 HOH HOH . M 5 HOH B 112 812 52 HOH HOH . M 5 HOH B 113 813 248 HOH HOH . M 5 HOH B 114 814 185 HOH HOH . M 5 HOH B 115 815 231 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . I 2 61.514 141.395 8.078 1 59.09 ? C1 GOL 603 B 1 HETATM 2 O O1 GOL . . . I 2 62.542 140.473 7.791 1 59.26 ? O1 GOL 603 B 1 HETATM 3 C C2 GOL . . . I 2 60.695 140.899 9.265 1 64.34 ? C2 GOL 603 B 1 HETATM 4 O O2 GOL . . . I 2 59.663 140.047 8.818 1 57.64 ? O2 GOL 603 B 1 HETATM 5 C C3 GOL . . . I 2 60.115 142.089 10.026 1 60.2 ? C3 GOL 603 B 1 HETATM 6 O O3 GOL . . . I 2 59.531 143.005 9.124 1 65.22 ? O3 GOL 603 B 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 20 _model_server_stats.create_model_time_ms 26 _model_server_stats.query_time_ms 393 _model_server_stats.encode_time_ms 9 _model_server_stats.element_count 6 #