data_6U3B # _model_server_result.job_id wD1TUsfCHsCIojZ1Ccio0g _model_server_result.datetime_utc '2025-04-23 05:14:21' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6u3b # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":504}' # _entry.id 6U3B # _exptl.entry_id 6U3B _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 40.078 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CALCIUM ION' _entity.pdbx_number_of_molecules 5 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6U3B _cell.length_a 41.611 _cell.length_b 56.594 _cell.length_c 68.586 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6U3B _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 2 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 D N N ? 3 E N N ? 3 F N N ? 3 G N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD1 ASP 20 A ASP 20 1_555 C CA CA . A CA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.334 ? metalc ? metalc2 A OD1 ASP 22 A ASP 22 1_555 C CA CA . A CA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.389 ? metalc ? metalc3 A OD1 ASP 24 A ASP 24 1_555 C CA CA . A CA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.444 ? metalc ? metalc4 A O THR 26 A THR 26 1_555 C CA CA . A CA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.353 ? metalc ? metalc5 A OE1 GLU 31 A GLU 31 1_555 C CA CA . A CA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.483 ? metalc ? metalc6 A OE2 GLU 31 A GLU 31 1_555 C CA CA . A CA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.395 ? metalc ? metalc7 A OD1 ASP 50 A ASP 50 1_555 G CA CA . B CA 1701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.575 ? metalc ? metalc8 A OD2 ASP 50 A ASP 50 1_555 G CA CA . B CA 1701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.481 ? metalc ? metalc9 A OD1 ASP 56 A ASP 56 1_555 D CA CA . A CA 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.234 ? metalc ? metalc10 A OD1 ASP 58 A ASP 58 1_555 D CA CA . A CA 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.395 ? metalc ? metalc11 A OD1 ASN 60 A ASN 60 1_555 D CA CA . A CA 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.484 ? metalc ? metalc12 A O THR 62 A THR 62 1_555 D CA CA . A CA 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.454 ? metalc ? metalc13 A OE1 GLU 67 A GLU 67 1_555 D CA CA . A CA 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.521 ? metalc ? metalc14 A OE2 GLU 67 A GLU 67 1_555 D CA CA . A CA 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.557 ? metalc ? metalc15 A OE1 GLU 82 A GLU 82 1_555 G CA CA . B CA 1701 3_544 ? ? ? ? ? ? ? ? ? ? ? ? 2.665 ? metalc ? metalc16 A OE2 GLU 82 A GLU 82 1_555 G CA CA . B CA 1701 3_544 ? ? ? ? ? ? ? ? ? ? ? ? 2.469 ? metalc ? metalc17 A OD1 ASP 93 A ASP 93 1_555 E CA CA . A CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.337 ? metalc ? metalc18 A OD1 ASP 95 A ASP 95 1_555 E CA CA . A CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.403 ? metalc ? metalc19 A OD1 ASN 97 A ASN 97 1_555 E CA CA . A CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.415 ? metalc ? metalc20 A O TYR 99 A TYR 99 1_555 E CA CA . A CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.35 ? metalc ? metalc21 A OE1 GLU 104 A GLU 104 1_555 E CA CA . A CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.487 ? metalc ? metalc22 A OE2 GLU 104 A GLU 104 1_555 E CA CA . A CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.456 ? metalc ? metalc23 A OD1 ASP 129 A ASP 129 1_555 F CA CA . A CA 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.267 ? metalc ? metalc24 A OD1 ASP 131 A ASP 131 1_555 F CA CA . A CA 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.412 ? metalc ? metalc25 A OD1 ASP 133 A ASP 133 1_555 F CA CA . A CA 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.388 ? metalc ? metalc26 A O PRO 135 A PRO 135 1_555 F CA CA . A CA 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.403 ? metalc ? metalc27 A OE1 GLU 140 A GLU 140 1_555 F CA CA . A CA 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.493 ? metalc ? metalc28 A OE2 GLU 140 A GLU 140 1_555 F CA CA . A CA 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.556 ? metalc ? metalc29 C CA CA . A CA 501 1_555 H O HOH . A HOH 659 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.425 ? metalc ? metalc30 D CA CA . A CA 502 1_555 H O HOH . A HOH 622 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.961 ? metalc ? metalc31 D CA CA . A CA 502 1_555 H O HOH . A HOH 639 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.39 ? metalc ? metalc32 E CA CA . A CA 503 1_555 H O HOH . A HOH 625 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.416 ? metalc ? metalc33 F CA CA . A CA 504 1_555 H O HOH . A HOH 691 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.388 ? metalc ? metalc34 H O HOH . A HOH 633 3_444 G CA CA . B CA 1701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.344 ? metalc ? metalc35 H O HOH . A HOH 695 3_444 G CA CA . B CA 1701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.404 ? metalc ? metalc36 B O SER 1 B SER 1608 1_555 G CA CA . B CA 1701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.414 ? metalc ? metalc37 B OD1 ASP 4 B ASP 1611 1_555 G CA CA . B CA 1701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.351 ? # _chem_comp.formula 'Ca 2' _chem_comp.formula_weight 40.078 _chem_comp.id CA _chem_comp.mon_nstd_flag . _chem_comp.name 'CALCIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 6U3B _atom_sites.fract_transf_matrix[1][1] 0.024032 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01767 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.01458 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 CA A 1 501 501 CA CA . D 3 CA A 1 502 502 CA CA . E 3 CA A 1 503 503 CA CA . F 3 CA A 1 504 504 CA CA . G 3 CA B 1 1701 505 CA CA . H 4 HOH A 1 601 195 HOH HOH . H 4 HOH A 2 602 108 HOH HOH . H 4 HOH A 3 603 64 HOH HOH . H 4 HOH A 4 604 66 HOH HOH . H 4 HOH A 5 605 117 HOH HOH . H 4 HOH A 6 606 158 HOH HOH . H 4 HOH A 7 607 132 HOH HOH . H 4 HOH A 8 608 159 HOH HOH . H 4 HOH A 9 609 135 HOH HOH . H 4 HOH A 10 610 141 HOH HOH . H 4 HOH A 11 611 122 HOH HOH . H 4 HOH A 12 612 83 HOH HOH . H 4 HOH A 13 613 29 HOH HOH . H 4 HOH A 14 614 78 HOH HOH . H 4 HOH A 15 615 164 HOH HOH . H 4 HOH A 16 616 115 HOH HOH . H 4 HOH A 17 617 50 HOH HOH . H 4 HOH A 18 618 99 HOH HOH . H 4 HOH A 19 619 18 HOH HOH . H 4 HOH A 20 620 191 HOH HOH . H 4 HOH A 21 621 54 HOH HOH . H 4 HOH A 22 622 62 HOH HOH . H 4 HOH A 23 623 121 HOH HOH . H 4 HOH A 24 624 109 HOH HOH . H 4 HOH A 25 625 11 HOH HOH . H 4 HOH A 26 626 57 HOH HOH . H 4 HOH A 27 627 151 HOH HOH . H 4 HOH A 28 628 12 HOH HOH . H 4 HOH A 29 629 48 HOH HOH . H 4 HOH A 30 630 113 HOH HOH . H 4 HOH A 31 631 56 HOH HOH . H 4 HOH A 32 632 95 HOH HOH . H 4 HOH A 33 633 171 HOH HOH . H 4 HOH A 34 634 84 HOH HOH . H 4 HOH A 35 635 15 HOH HOH . H 4 HOH A 36 636 80 HOH HOH . H 4 HOH A 37 637 39 HOH HOH . H 4 HOH A 38 638 38 HOH HOH . H 4 HOH A 39 639 36 HOH HOH . H 4 HOH A 40 640 127 HOH HOH . H 4 HOH A 41 641 68 HOH HOH . H 4 HOH A 42 642 7 HOH HOH . H 4 HOH A 43 643 58 HOH HOH . H 4 HOH A 44 644 192 HOH HOH . H 4 HOH A 45 645 91 HOH HOH . H 4 HOH A 46 646 28 HOH HOH . H 4 HOH A 47 647 189 HOH HOH . H 4 HOH A 48 648 73 HOH HOH . H 4 HOH A 49 649 53 HOH HOH . H 4 HOH A 50 650 120 HOH HOH . H 4 HOH A 51 651 9 HOH HOH . H 4 HOH A 52 652 180 HOH HOH . H 4 HOH A 53 653 35 HOH HOH . H 4 HOH A 54 654 21 HOH HOH . H 4 HOH A 55 655 152 HOH HOH . H 4 HOH A 56 656 79 HOH HOH . H 4 HOH A 57 657 10 HOH HOH . H 4 HOH A 58 658 19 HOH HOH . H 4 HOH A 59 659 41 HOH HOH . H 4 HOH A 60 660 26 HOH HOH . H 4 HOH A 61 661 134 HOH HOH . H 4 HOH A 62 662 131 HOH HOH . H 4 HOH A 63 663 44 HOH HOH . H 4 HOH A 64 664 46 HOH HOH . H 4 HOH A 65 665 61 HOH HOH . H 4 HOH A 66 666 67 HOH HOH . H 4 HOH A 67 667 130 HOH HOH . H 4 HOH A 68 668 63 HOH HOH . H 4 HOH A 69 669 90 HOH HOH . H 4 HOH A 70 670 5 HOH HOH . H 4 HOH A 71 671 147 HOH HOH . H 4 HOH A 72 672 174 HOH HOH . H 4 HOH A 73 673 144 HOH HOH . H 4 HOH A 74 674 34 HOH HOH . H 4 HOH A 75 675 55 HOH HOH . H 4 HOH A 76 676 183 HOH HOH . H 4 HOH A 77 677 16 HOH HOH . H 4 HOH A 78 678 82 HOH HOH . H 4 HOH A 79 679 129 HOH HOH . H 4 HOH A 80 680 25 HOH HOH . H 4 HOH A 81 681 42 HOH HOH . H 4 HOH A 82 682 71 HOH HOH . H 4 HOH A 83 683 76 HOH HOH . H 4 HOH A 84 684 111 HOH HOH . H 4 HOH A 85 685 2 HOH HOH . H 4 HOH A 86 686 49 HOH HOH . H 4 HOH A 87 687 140 HOH HOH . H 4 HOH A 88 688 162 HOH HOH . H 4 HOH A 89 689 161 HOH HOH . H 4 HOH A 90 690 24 HOH HOH . H 4 HOH A 91 691 13 HOH HOH . H 4 HOH A 92 692 22 HOH HOH . H 4 HOH A 93 693 23 HOH HOH . H 4 HOH A 94 694 14 HOH HOH . H 4 HOH A 95 695 87 HOH HOH . H 4 HOH A 96 696 157 HOH HOH . H 4 HOH A 97 697 6 HOH HOH . H 4 HOH A 98 698 137 HOH HOH . H 4 HOH A 99 699 98 HOH HOH . H 4 HOH A 100 700 100 HOH HOH . H 4 HOH A 101 701 149 HOH HOH . H 4 HOH A 102 702 142 HOH HOH . H 4 HOH A 103 703 179 HOH HOH . H 4 HOH A 104 704 3 HOH HOH . H 4 HOH A 105 705 184 HOH HOH . H 4 HOH A 106 706 136 HOH HOH . H 4 HOH A 107 707 172 HOH HOH . H 4 HOH A 108 708 156 HOH HOH . H 4 HOH A 109 709 70 HOH HOH . H 4 HOH A 110 710 101 HOH HOH . H 4 HOH A 111 711 138 HOH HOH . H 4 HOH A 112 712 182 HOH HOH . H 4 HOH A 113 713 94 HOH HOH . H 4 HOH A 114 714 69 HOH HOH . H 4 HOH A 115 715 92 HOH HOH . H 4 HOH A 116 716 72 HOH HOH . H 4 HOH A 117 717 170 HOH HOH . H 4 HOH A 118 718 154 HOH HOH . H 4 HOH A 119 719 74 HOH HOH . H 4 HOH A 120 720 118 HOH HOH . H 4 HOH A 121 721 186 HOH HOH . H 4 HOH A 122 722 123 HOH HOH . H 4 HOH A 123 723 155 HOH HOH . H 4 HOH A 124 724 93 HOH HOH . H 4 HOH A 125 725 114 HOH HOH . H 4 HOH A 126 726 153 HOH HOH . H 4 HOH A 127 727 75 HOH HOH . I 4 HOH B 1 1801 146 HOH HOH . I 4 HOH B 2 1802 167 HOH HOH . I 4 HOH B 3 1803 166 HOH HOH . I 4 HOH B 4 1804 96 HOH HOH . I 4 HOH B 5 1805 133 HOH HOH . I 4 HOH B 6 1806 116 HOH HOH . I 4 HOH B 7 1807 8 HOH HOH . I 4 HOH B 8 1808 43 HOH HOH . I 4 HOH B 9 1809 165 HOH HOH . I 4 HOH B 10 1810 30 HOH HOH . I 4 HOH B 11 1811 173 HOH HOH . I 4 HOH B 12 1812 163 HOH HOH . I 4 HOH B 13 1813 27 HOH HOH . I 4 HOH B 14 1814 85 HOH HOH . I 4 HOH B 15 1815 88 HOH HOH . I 4 HOH B 16 1816 45 HOH HOH . I 4 HOH B 17 1817 40 HOH HOH . I 4 HOH B 18 1818 59 HOH HOH . I 4 HOH B 19 1819 126 HOH HOH . I 4 HOH B 20 1820 20 HOH HOH . I 4 HOH B 21 1821 86 HOH HOH . I 4 HOH B 22 1822 125 HOH HOH . I 4 HOH B 23 1823 102 HOH HOH . I 4 HOH B 24 1824 148 HOH HOH . I 4 HOH B 25 1825 176 HOH HOH . I 4 HOH B 26 1826 124 HOH HOH . I 4 HOH B 27 1827 37 HOH HOH . I 4 HOH B 28 1828 177 HOH HOH . I 4 HOH B 29 1829 150 HOH HOH . I 4 HOH B 30 1830 175 HOH HOH . I 4 HOH B 31 1831 168 HOH HOH . I 4 HOH B 32 1832 194 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol CA _atom_site.label_atom_id CA _atom_site.label_comp_id CA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id F _atom_site.label_entity_id 3 _atom_site.Cartn_x 24.104 _atom_site.Cartn_y -6.346 _atom_site.Cartn_z -28.58 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 12 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id CA _atom_site.auth_comp_id CA _atom_site.auth_seq_id 504 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 44 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 302 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 1 #