data_6U3E # _model_server_result.job_id t1wlzZEkA7sZDvB8FkmeCw _model_server_result.datetime_utc '2025-09-04 23:45:11' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6u3e # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":400}' # _entry.id 6U3E # _exptl.entry_id 6U3E _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 500.075 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description INOSITOL-(1,3,4,5)-TETRAKISPHOSPHATE _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # _chem_comp.formula 'C6 H16 O18 P4' _chem_comp.formula_weight 500.075 _chem_comp.id 4IP _chem_comp.mon_nstd_flag . _chem_comp.name INOSITOL-(1,3,4,5)-TETRAKISPHOSPHATE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 4IP sing 1 n n C1 C2 4IP sing 2 n n C1 C6 4IP sing 3 n n C1 H1 4IP sing 4 n n O1 P1 4IP sing 5 n n C2 O2 4IP sing 6 n n C2 C3 4IP sing 7 n n C2 H2 4IP sing 8 n n O2 HO2 4IP sing 9 n n C3 O3 4IP sing 10 n n C3 C4 4IP sing 11 n n C3 H3 4IP sing 12 n n O3 P3 4IP sing 13 n n C4 O4 4IP sing 14 n n C4 C5 4IP sing 15 n n C4 H4 4IP sing 16 n n O4 P4 4IP sing 17 n n C5 O5 4IP sing 18 n n C5 C6 4IP sing 19 n n C5 H5 4IP sing 20 n n O5 P5 4IP sing 21 n n C6 O6 4IP sing 22 n n C6 H6 4IP sing 23 n n O6 HO6 4IP sing 24 n n P1 O1P 4IP doub 25 n n P1 O2P 4IP sing 26 n n P1 O3P 4IP sing 27 n n O2P HO2P 4IP sing 28 n n O3P HO3P 4IP sing 29 n n P3 O4P 4IP doub 30 n n P3 O5P 4IP sing 31 n n P3 O6P 4IP sing 32 n n O5P HO5P 4IP sing 33 n n O6P HO6P 4IP sing 34 n n P4 O7P 4IP sing 35 n n P4 O8P 4IP sing 36 n n P4 O9P 4IP doub 37 n n O7P HO7P 4IP sing 38 n n O8P HO8P 4IP sing 39 n n P5 OPF 4IP sing 40 n n P5 OPG 4IP doub 41 n n P5 OPH 4IP sing 42 n n OPF HOP1 4IP sing 43 n n OPH HOP3 4IP sing 44 n n # _atom_sites.entry_id 6U3E _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 4IP A 1 400 400 4IP 4IP . D 2 4IP B 1 401 399 4IP 4IP . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 4IP . . . C 2 37.452 24.945 -12.775 1 20 ? C1 4IP 400 A 1 HETATM 2 O O1 4IP . . . C 2 37.696 26.329 -12.494 1 20 ? O1 4IP 400 A 1 HETATM 3 C C2 4IP . . . C 2 35.948 24.674 -12.743 1 20 ? C2 4IP 400 A 1 HETATM 4 O O2 4IP . . . C 2 35.406 24.994 -11.45 1 20 ? O2 4IP 400 A 1 HETATM 5 C C3 4IP . . . C 2 35.701 23.204 -13.089 1 20 ? C3 4IP 400 A 1 HETATM 6 O O3 4IP . . . C 2 34.304 22.948 -13.252 1 20 ? O3 4IP 400 A 1 HETATM 7 C C4 4IP . . . C 2 36.332 22.273 -12.052 1 20 ? C4 4IP 400 A 1 HETATM 8 O O4 4IP . . . C 2 36.212 20.925 -12.495 1 20 ? O4 4IP 400 A 1 HETATM 9 C C5 4IP . . . C 2 37.833 22.563 -11.909 1 20 ? C5 4IP 400 A 1 HETATM 10 O O5 4IP . . . C 2 38.273 21.802 -10.781 1 20 ? O5 4IP 400 A 1 HETATM 11 C C6 4IP . . . C 2 38.169 24.06 -11.75 1 20 ? C6 4IP 400 A 1 HETATM 12 O O6 4IP . . . C 2 39.595 24.288 -11.837 1 20 ? O6 4IP 400 A 1 HETATM 13 P P1 4IP . . . C 2 37.814 27.456 -13.652 1 20 ? P1 4IP 400 A 1 HETATM 14 O O1P 4IP . . . C 2 36.746 27.154 -14.675 1 20 -1 O1P 4IP 400 A 1 HETATM 15 O O2P 4IP . . . C 2 37.575 28.685 -12.833 1 20 ? O2P 4IP 400 A 1 HETATM 16 O O3P 4IP . . . C 2 39.211 27.316 -14.192 1 20 ? O3P 4IP 400 A 1 HETATM 17 P P3 4IP . . . C 2 33.732 22.494 -14.681 1 20 ? P3 4IP 400 A 1 HETATM 18 O O4P 4IP . . . C 2 34.102 23.58 -15.677 1 20 -1 O4P 4IP 400 A 1 HETATM 19 O O5P 4IP . . . C 2 34.441 21.177 -14.952 1 20 ? O5P 4IP 400 A 1 HETATM 20 O O6P 4IP . . . C 2 32.254 22.338 -14.439 1 20 ? O6P 4IP 400 A 1 HETATM 21 P P4 4IP . . . C 2 35.178 19.869 -11.87 1 20 ? P4 4IP 400 A 1 HETATM 22 O O7P 4IP . . . C 2 34.621 20.523 -10.63 1 20 ? O7P 4IP 400 A 1 HETATM 23 O O8P 4IP . . . C 2 36.031 18.659 -11.618 1 20 -1 O8P 4IP 400 A 1 HETATM 24 O O9P 4IP . . . C 2 34.15 19.658 -12.957 1 20 ? O9P 4IP 400 A 1 HETATM 25 P P5 4IP . . . C 2 39.774 21.252 -10.64 1 20 ? P5 4IP 400 A 1 HETATM 26 O OPF 4IP . . . C 2 39.668 20.221 -9.547 1 20 -1 OPF 4IP 400 A 1 HETATM 27 O OPG 4IP . . . C 2 40.133 20.632 -11.974 1 20 ? OPG 4IP 400 A 1 HETATM 28 O OPH 4IP . . . C 2 40.582 22.461 -10.272 1 20 ? OPH 4IP 400 A 1 # _model_server_stats.io_time_ms 95 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 316 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 28 #