data_6U3P
#
_model_server_result.job_id            8htZBEsGEacKhtOpAFN7MQ 
_model_server_result.datetime_utc      '2024-11-27 17:15:18' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6u3p 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":601}' 
#
_entry.id    6U3P 
#
_exptl.entry_id    6U3P 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              328.367 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "(2E,2'E)-N,N'-[1,4-diazepane-1,4-diyldi(ethane-2,1-diyl)]bis[2-(hydroxyimino)acetamide]" 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            6U3P 
_cell.length_a            125.407 
_cell.length_b            125.407 
_cell.length_c            129.826 
_cell.Z_PDB               6 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6U3P 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        144 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 31' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
B,D,F 1 1 
A,C,E 1 2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 3_554 -x+y,-x,z-1/3 -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 0 0 -43.275333 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      2 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 72 A CYS 69 1_555 A SG CYS 99 A CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? 
disulf ? disulf2 A SG CYS 260 A CYS 257 1_555 A SG CYS 275 A CYS 272 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? 
disulf ? disulf3 A SG CYS 412 A CYS 409 1_555 A SG CYS 532 A CYS 529 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? 
disulf ? disulf4 B SG CYS 72 B CYS 69 1_555 B SG CYS 99 B CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? 
disulf ? disulf5 B SG CYS 260 B CYS 257 1_555 B SG CYS 275 B CYS 272 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? 
disulf ? disulf6 B SG CYS 412 B CYS 409 1_555 B SG CYS 532 B CYS 529 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? 
#
_chem_comp.formula           'C13 H24 N6 O4' 
_chem_comp.formula_weight    328.367 
_chem_comp.id                PQY 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              "(2E,2'E)-N,N'-[1,4-diazepane-1,4-diyldi(ethane-2,1-diyl)]bis[2-(hydroxyimino)acetamide]" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
O3 N5 PQY sing 269 n n 
N5 C13 PQY doub 270 e n 
C13 C12 PQY sing 271 n n 
C12 N4 PQY sing 272 n n 
C12 O2 PQY doub 273 n n 
N4 C7 PQY sing 274 n n 
C7 C6 PQY sing 275 n n 
C6 N2 PQY sing 276 n n 
N2 C3 PQY sing 277 n n 
N2 C4 PQY sing 278 n n 
C3 C2 PQY sing 279 n n 
C2 C1 PQY sing 280 n n 
C4 C5 PQY sing 281 n n 
C5 N1 PQY sing 282 n n 
C1 N1 PQY sing 283 n n 
N1 C8 PQY sing 284 n n 
C8 C9 PQY sing 285 n n 
C9 N3 PQY sing 286 n n 
O1 C10 PQY doub 287 n n 
N3 C10 PQY sing 288 n n 
C10 C11 PQY sing 289 n n 
C11 N6 PQY doub 290 e n 
N6 O4 PQY sing 291 n n 
N3 H2 PQY sing 292 n n 
C4 H3 PQY sing 293 n n 
C4 H4 PQY sing 294 n n 
C5 H5 PQY sing 295 n n 
C5 H6 PQY sing 296 n n 
C6 H7 PQY sing 297 n n 
C6 H8 PQY sing 298 n n 
C7 H9 PQY sing 299 n n 
C7 H10 PQY sing 300 n n 
C8 H11 PQY sing 301 n n 
C8 H12 PQY sing 302 n n 
C13 H13 PQY sing 303 n n 
C1 H15 PQY sing 304 n n 
C1 H16 PQY sing 305 n n 
C11 H17 PQY sing 306 n n 
C2 H19 PQY sing 307 n n 
C2 H20 PQY sing 308 n n 
C3 H21 PQY sing 309 n n 
C3 H22 PQY sing 310 n n 
C9 H23 PQY sing 311 n n 
C9 H24 PQY sing 312 n n 
N4 H26 PQY sing 313 n n 
O3 H29 PQY sing 314 n n 
O4 H30 PQY sing 315 n n 
#
_atom_sites.entry_id                     6U3P 
_atom_sites.fract_transf_matrix[1][1]    0.007974 
_atom_sites.fract_transf_matrix[1][2]    0.004604 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.009208 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.007703 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 PQY A 1 601 5 PQY LIG . 
D 3 DMS B 1 601 504 DMS DMS . 
E 4 HOH A 1 701 26 HOH HOH . 
E 4 HOH A 2 702 2 HOH HOH . 
E 4 HOH A 3 703 6 HOH HOH . 
E 4 HOH A 4 704 8 HOH HOH . 
E 4 HOH A 5 705 33 HOH HOH . 
E 4 HOH A 6 706 32 HOH HOH . 
E 4 HOH A 7 707 75 HOH HOH . 
E 4 HOH A 8 708 70 HOH HOH . 
E 4 HOH A 9 709 72 HOH HOH . 
E 4 HOH A 10 710 34 HOH HOH . 
E 4 HOH A 11 711 69 HOH HOH . 
E 4 HOH A 12 712 64 HOH HOH . 
E 4 HOH A 13 713 9 HOH HOH . 
E 4 HOH A 14 714 39 HOH HOH . 
E 4 HOH A 15 715 29 HOH HOH . 
E 4 HOH A 16 716 59 HOH HOH . 
E 4 HOH A 17 717 3 HOH HOH . 
E 4 HOH A 18 718 31 HOH HOH . 
E 4 HOH A 19 719 15 HOH HOH . 
E 4 HOH A 20 720 38 HOH HOH . 
E 4 HOH A 21 721 73 HOH HOH . 
E 4 HOH A 22 722 28 HOH HOH . 
E 4 HOH A 23 723 71 HOH HOH . 
E 4 HOH A 24 724 40 HOH HOH . 
E 4 HOH A 25 725 41 HOH HOH . 
E 4 HOH A 26 726 43 HOH HOH . 
E 4 HOH A 27 727 62 HOH HOH . 
E 4 HOH A 28 728 35 HOH HOH . 
E 4 HOH A 29 729 67 HOH HOH . 
E 4 HOH A 30 730 36 HOH HOH . 
E 4 HOH A 31 731 37 HOH HOH . 
E 4 HOH A 32 732 68 HOH HOH . 
F 4 HOH B 1 701 52 HOH HOH . 
F 4 HOH B 2 702 57 HOH HOH . 
F 4 HOH B 3 703 48 HOH HOH . 
F 4 HOH B 4 704 30 HOH HOH . 
F 4 HOH B 5 705 63 HOH HOH . 
F 4 HOH B 6 706 5 HOH HOH . 
F 4 HOH B 7 707 24 HOH HOH . 
F 4 HOH B 8 708 60 HOH HOH . 
F 4 HOH B 9 709 17 HOH HOH . 
F 4 HOH B 10 710 47 HOH HOH . 
F 4 HOH B 11 711 1 HOH HOH . 
F 4 HOH B 12 712 20 HOH HOH . 
F 4 HOH B 13 713 4 HOH HOH . 
F 4 HOH B 14 714 54 HOH HOH . 
F 4 HOH B 15 715 51 HOH HOH . 
F 4 HOH B 16 716 61 HOH HOH . 
F 4 HOH B 17 717 7 HOH HOH . 
F 4 HOH B 18 718 65 HOH HOH . 
F 4 HOH B 19 719 10 HOH HOH . 
F 4 HOH B 20 720 25 HOH HOH . 
F 4 HOH B 21 721 44 HOH HOH . 
F 4 HOH B 22 722 66 HOH HOH . 
F 4 HOH B 23 723 13 HOH HOH . 
F 4 HOH B 24 724 46 HOH HOH . 
F 4 HOH B 25 725 45 HOH HOH . 
F 4 HOH B 26 726 74 HOH HOH . 
F 4 HOH B 27 727 27 HOH HOH . 
F 4 HOH B 28 728 11 HOH HOH . 
F 4 HOH B 29 729 14 HOH HOH . 
F 4 HOH B 30 730 18 HOH HOH . 
F 4 HOH B 31 731 22 HOH HOH . 
F 4 HOH B 32 732 53 HOH HOH . 
F 4 HOH B 33 733 56 HOH HOH . 
F 4 HOH B 34 734 49 HOH HOH . 
F 4 HOH B 35 735 42 HOH HOH . 
F 4 HOH B 36 736 55 HOH HOH . 
F 4 HOH B 37 737 50 HOH HOH . 
F 4 HOH B 38 738 12 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N1 PQY . . . C 2 32.973 -12.065 9.554 0.9 95.88 ? N1 PQY 601 A 1 
HETATM 2 N N3 PQY . . . C 2 34.902 -12.265 12.484 0.9 90.21 ? N3 PQY 601 A 1 
HETATM 3 C C4 PQY . . . C 2 32.269 -13.91 8.476 0.9 91.04 ? C4 PQY 601 A 1 
HETATM 4 C C5 PQY . . . C 2 33.383 -12.903 8.661 0.9 88.22 ? C5 PQY 601 A 1 
HETATM 5 C C6 PQY . . . C 2 31.588 -13.244 6.477 0.9 98.88 ? C6 PQY 601 A 1 
HETATM 6 C C7 PQY . . . C 2 31.907 -14.537 5.722 0.9 83.29 ? C7 PQY 601 A 1 
HETATM 7 C C8 PQY . . . C 2 33.938 -11.77 10.341 0.9 88.63 ? C8 PQY 601 A 1 
HETATM 8 C C10 PQY . . . C 2 36.362 -12.141 12.493 0.9 92.34 ? C10 PQY 601 A 1 
HETATM 9 C C13 PQY . . . C 2 28.936 -14.741 3.532 0.9 82.86 ? C13 PQY 601 A 1 
HETATM 10 C C1 PQY . . . C 2 32.553 -11.021 8.918 0.9 81.37 ? C1 PQY 601 A 1 
HETATM 11 C C11 PQY . . . C 2 37.217 -12.702 13.639 0.9 63.83 ? C11 PQY 601 A 1 
HETATM 12 C C12 PQY . . . C 2 29.49 -14.385 4.911 0.9 93.01 ? C12 PQY 601 A 1 
HETATM 13 C C2 PQY . . . C 2 31.158 -11.149 8.355 0.9 74.12 ? C2 PQY 601 A 1 
HETATM 14 C C3 PQY . . . C 2 30.566 -12.582 8.33 0.9 74 ? C3 PQY 601 A 1 
HETATM 15 C C9 PQY . . . C 2 34.165 -12.849 11.396 0.9 65.22 ? C9 PQY 601 A 1 
HETATM 16 N N2 PQY . . . C 2 31.258 -13.483 7.756 0.9 97.72 ? N2 PQY 601 A 1 
HETATM 17 N N4 PQY . . . C 2 30.665 -15.142 5.342 0.9 91.59 ? N4 PQY 601 A 1 
HETATM 18 N N5 PQY . . . C 2 29.6 -15.626 2.941 0.9 93.97 ? N5 PQY 601 A 1 
HETATM 19 N N6 PQY . . . C 2 38.385 -12.284 13.719 0.9 62.4 ? N6 PQY 601 A 1 
HETATM 20 O O1 PQY . . . C 2 36.953 -11.592 11.662 0.9 87.79 ? O1 PQY 601 A 1 
HETATM 21 O O2 PQY . . . C 2 28.976 -13.568 5.594 0.9 88.38 ? O2 PQY 601 A 1 
HETATM 22 O O3 PQY . . . C 2 29.238 -16.074 1.702 0.9 107.11 ? O3 PQY 601 A 1 
HETATM 23 O O4 PQY . . . C 2 39.078 -12.818 14.754 0.9 78.41 ? O4 PQY 601 A 1 
#
_model_server_stats.io_time_ms              13 
_model_server_stats.parse_time_ms           14 
_model_server_stats.create_model_time_ms    12 
_model_server_stats.query_time_ms           584 
_model_server_stats.encode_time_ms          6 
_model_server_stats.element_count           23 
#