data_6U3U
#
_model_server_result.job_id            FBoK4Nn0cxKf_ZhLOoZ3kQ 
_model_server_result.datetime_utc      '2025-08-31 01:49:03' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6u3u 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"N","auth_seq_id":302}' 
#
_entry.id    6U3U 
#
_exptl.entry_id    6U3U 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              62.068 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            1,2-ETHANEDIOL 
_entity.pdbx_number_of_molecules    7 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          94.61 
_cell.angle_gamma         90 
_cell.entry_id            6U3U 
_cell.length_a            57.178 
_cell.length_b            157.022 
_cell.length_c            107.407 
_cell.Z_PDB               20 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6U3U 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA hexameric 6 author_and_software_defined_assembly 1 
PISA hexameric 6 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,C,D,E,F,M,N,O,P,Q,R,S,W,X,Y,Z,AA,BA 1 1 
G,H,I,J,K,L,T,U,V,CA,DA,EA,FA,GA,HA 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 N N N 
? 4 O N N 
? 4 P N N 
? 4 Q N N 
? 4 R N N 
? 4 S N N 
? 4 V N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 241 B CYS 241 1_555 A SG CYS 260 B CYS 260 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? 
disulf ? disulf2 B SG CYS 3 C CYS 3 1_555 B SG CYS 56 C CYS 56 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? 
disulf ? disulf3 C SG CYS 3 D CYS 3 1_555 C SG CYS 56 D CYS 56 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? 
disulf ? disulf4 D SG CYS 3 E CYS 3 1_555 D SG CYS 56 E CYS 56 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.005 ? 
disulf ? disulf5 E SG CYS 3 H CYS 3 1_555 E SG CYS 56 H CYS 56 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? 
disulf ? disulf6 F SG CYS 3 I CYS 3 1_555 F SG CYS 56 I CYS 56 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? 
disulf ? disulf7 G SG CYS 241 A CYS 241 1_555 G SG CYS 260 A CYS 260 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? 
disulf ? disulf8 H SG CYS 3 F CYS 3 1_555 H SG CYS 56 F CYS 56 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.048 ? 
disulf ? disulf9 I SG CYS 3 G CYS 3 1_555 I SG CYS 56 G CYS 56 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? 
disulf ? disulf10 J SG CYS 3 J CYS 3 1_555 J SG CYS 56 J CYS 56 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? 
disulf ? disulf11 K SG CYS 3 K CYS 3 1_555 K SG CYS 56 K CYS 56 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? 
disulf ? disulf12 L SG CYS 3 L CYS 3 1_555 L SG CYS 56 L CYS 56 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? 
metalc ? metalc1 A ND1 HIS 63 B HIS 63 1_555 T ZN ZN . A ZN 301 1_556 ? ? ? ? ? ? ? ? ? ? ? ? 2.199 ? 
metalc ? metalc2 A NE2 HIS 66 B HIS 66 1_555 T ZN ZN . A ZN 301 1_556 ? ? ? ? ? ? ? ? ? ? ? ? 2.3 ? 
metalc ? metalc3 G NE2 HIS 63 A HIS 63 1_555 T ZN ZN . A ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.604 ? 
metalc ? metalc4 G NE2 HIS 66 A HIS 66 1_555 T ZN ZN . A ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.095 ? 
#
_chem_comp.formula           'C2 H6 O2' 
_chem_comp.formula_weight    62.068 
_chem_comp.id                EDO 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              1,2-ETHANEDIOL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'ETHYLENE GLYCOL' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 EDO sing 83 n n 
C1 C2 EDO sing 84 n n 
C1 H11 EDO sing 85 n n 
C1 H12 EDO sing 86 n n 
O1 HO1 EDO sing 87 n n 
C2 O2 EDO sing 88 n n 
C2 H21 EDO sing 89 n n 
C2 H22 EDO sing 90 n n 
O2 HO2 EDO sing 91 n n 
#
_atom_sites.entry_id                     6U3U 
_atom_sites.fract_transf_matrix[1][1]    0.017489 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.001412 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.006369 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.009341 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
M 3 EPE B 1 301 1 EPE EPE . 
N 4 EDO B 1 302 1 EDO EDO . 
O 4 EDO B 1 303 3 EDO EDO . 
P 4 EDO B 1 304 7 EDO EDO . 
Q 4 EDO C 1 101 6 EDO EDO . 
R 4 EDO D 1 101 8 EDO EDO . 
S 4 EDO I 1 101 2 EDO EDO . 
T 5 ZN A 1 301 1 ZN ZN . 
U 3 EPE A 1 302 2 EPE EPE . 
V 4 EDO J 1 101 5 EDO EDO . 
W 6 HOH B 1 401 90 HOH HOH . 
W 6 HOH B 2 402 86 HOH HOH . 
W 6 HOH B 3 403 98 HOH HOH . 
W 6 HOH B 4 404 6 HOH HOH . 
W 6 HOH B 5 405 3 HOH HOH . 
W 6 HOH B 6 406 46 HOH HOH . 
W 6 HOH B 7 407 1 HOH HOH . 
W 6 HOH B 8 408 96 HOH HOH . 
W 6 HOH B 9 409 102 HOH HOH . 
W 6 HOH B 10 410 37 HOH HOH . 
W 6 HOH B 11 411 20 HOH HOH . 
W 6 HOH B 12 412 63 HOH HOH . 
W 6 HOH B 13 413 10 HOH HOH . 
W 6 HOH B 14 414 13 HOH HOH . 
W 6 HOH B 15 415 95 HOH HOH . 
W 6 HOH B 16 416 83 HOH HOH . 
W 6 HOH B 17 417 19 HOH HOH . 
W 6 HOH B 18 418 73 HOH HOH . 
W 6 HOH B 19 419 109 HOH HOH . 
W 6 HOH B 20 420 56 HOH HOH . 
W 6 HOH B 21 421 79 HOH HOH . 
W 6 HOH B 22 422 7 HOH HOH . 
W 6 HOH B 23 423 12 HOH HOH . 
W 6 HOH B 24 424 14 HOH HOH . 
W 6 HOH B 25 425 52 HOH HOH . 
W 6 HOH B 26 426 9 HOH HOH . 
W 6 HOH B 27 427 105 HOH HOH . 
W 6 HOH B 28 428 67 HOH HOH . 
W 6 HOH B 29 429 68 HOH HOH . 
W 6 HOH B 30 430 75 HOH HOH . 
W 6 HOH B 31 431 45 HOH HOH . 
W 6 HOH B 32 432 77 HOH HOH . 
W 6 HOH B 33 433 112 HOH HOH . 
X 6 HOH C 1 201 18 HOH HOH . 
X 6 HOH C 2 202 33 HOH HOH . 
X 6 HOH C 3 203 5 HOH HOH . 
X 6 HOH C 4 204 23 HOH HOH . 
X 6 HOH C 5 205 24 HOH HOH . 
X 6 HOH C 6 206 108 HOH HOH . 
X 6 HOH C 7 207 32 HOH HOH . 
X 6 HOH C 8 208 116 HOH HOH . 
X 6 HOH C 9 209 113 HOH HOH . 
X 6 HOH C 10 210 115 HOH HOH . 
Y 6 HOH D 1 201 57 HOH HOH . 
Y 6 HOH D 2 202 43 HOH HOH . 
Y 6 HOH D 3 203 92 HOH HOH . 
Y 6 HOH D 4 204 47 HOH HOH . 
Y 6 HOH D 5 205 80 HOH HOH . 
Y 6 HOH D 6 206 91 HOH HOH . 
Y 6 HOH D 7 207 76 HOH HOH . 
Y 6 HOH D 8 208 99 HOH HOH . 
Y 6 HOH D 9 209 94 HOH HOH . 
Y 6 HOH D 10 210 60 HOH HOH . 
Z 6 HOH E 1 101 42 HOH HOH . 
Z 6 HOH E 2 102 101 HOH HOH . 
Z 6 HOH E 3 103 25 HOH HOH . 
Z 6 HOH E 4 104 82 HOH HOH . 
Z 6 HOH E 5 105 104 HOH HOH . 
Z 6 HOH E 6 106 89 HOH HOH . 
AA 6 HOH H 1 101 40 HOH HOH . 
AA 6 HOH H 2 102 103 HOH HOH . 
AA 6 HOH H 3 103 26 HOH HOH . 
AA 6 HOH H 4 104 107 HOH HOH . 
BA 6 HOH I 1 201 29 HOH HOH . 
BA 6 HOH I 2 202 16 HOH HOH . 
BA 6 HOH I 3 203 100 HOH HOH . 
BA 6 HOH I 4 204 4 HOH HOH . 
BA 6 HOH I 5 205 8 HOH HOH . 
BA 6 HOH I 6 206 21 HOH HOH . 
BA 6 HOH I 7 207 30 HOH HOH . 
BA 6 HOH I 8 208 34 HOH HOH . 
BA 6 HOH I 9 209 11 HOH HOH . 
BA 6 HOH I 10 210 59 HOH HOH . 
BA 6 HOH I 11 211 74 HOH HOH . 
CA 6 HOH A 1 401 31 HOH HOH . 
CA 6 HOH A 2 402 97 HOH HOH . 
CA 6 HOH A 3 403 64 HOH HOH . 
CA 6 HOH A 4 404 93 HOH HOH . 
CA 6 HOH A 5 405 36 HOH HOH . 
CA 6 HOH A 6 406 85 HOH HOH . 
CA 6 HOH A 7 407 84 HOH HOH . 
CA 6 HOH A 8 408 69 HOH HOH . 
CA 6 HOH A 9 409 71 HOH HOH . 
CA 6 HOH A 10 410 2 HOH HOH . 
CA 6 HOH A 11 411 55 HOH HOH . 
CA 6 HOH A 12 412 15 HOH HOH . 
CA 6 HOH A 13 413 22 HOH HOH . 
CA 6 HOH A 14 414 49 HOH HOH . 
CA 6 HOH A 15 415 106 HOH HOH . 
CA 6 HOH A 16 416 51 HOH HOH . 
CA 6 HOH A 17 417 114 HOH HOH . 
CA 6 HOH A 18 418 70 HOH HOH . 
CA 6 HOH A 19 419 65 HOH HOH . 
CA 6 HOH A 20 420 72 HOH HOH . 
CA 6 HOH A 21 421 41 HOH HOH . 
CA 6 HOH A 22 422 111 HOH HOH . 
DA 6 HOH F 1 101 110 HOH HOH . 
DA 6 HOH F 2 102 39 HOH HOH . 
DA 6 HOH F 3 103 88 HOH HOH . 
DA 6 HOH F 4 104 53 HOH HOH . 
EA 6 HOH G 1 101 58 HOH HOH . 
EA 6 HOH G 2 102 17 HOH HOH . 
EA 6 HOH G 3 103 48 HOH HOH . 
EA 6 HOH G 4 104 28 HOH HOH . 
EA 6 HOH G 5 105 44 HOH HOH . 
EA 6 HOH G 6 106 54 HOH HOH . 
FA 6 HOH J 1 201 81 HOH HOH . 
FA 6 HOH J 2 202 50 HOH HOH . 
FA 6 HOH J 3 203 38 HOH HOH . 
FA 6 HOH J 4 204 78 HOH HOH . 
GA 6 HOH K 1 101 62 HOH HOH . 
HA 6 HOH L 1 101 66 HOH HOH . 
HA 6 HOH L 2 102 61 HOH HOH . 
HA 6 HOH L 3 103 87 HOH HOH . 
HA 6 HOH L 4 104 35 HOH HOH . 
HA 6 HOH L 5 105 27 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 EDO . . . N 4 -34.538 14.827 -1.611 1 61.69 ? C1 EDO 302 B 1 
HETATM 2 O O1 EDO . . . N 4 -34.596 16.224 -1.291 1 57.38 ? O1 EDO 302 B 1 
HETATM 3 C C2 EDO . . . N 4 -33.281 14.521 -2.416 1 49.1 ? C2 EDO 302 B 1 
HETATM 4 O O2 EDO . . . N 4 -33.58 14.488 -3.816 1 69.65 ? O2 EDO 302 B 1 
HETATM 5 H H11 EDO . . . N 4 -34.536 14.24 -0.69 1 74.1 ? H11 EDO 302 B 1 
HETATM 6 H H12 EDO . . . N 4 -35.421 14.545 -2.188 1 74.1 ? H12 EDO 302 B 1 
HETATM 7 H HO1 EDO . . . N 4 -35.398 16.405 -0.782 1 68.93 ? HO1 EDO 302 B 1 
HETATM 8 H H21 EDO . . . N 4 -32.525 15.284 -2.22 1 58.99 ? H21 EDO 302 B 1 
HETATM 9 H H22 EDO . . . N 4 -32.872 13.557 -2.105 1 58.99 ? H22 EDO 302 B 1 
HETATM 10 H HO2 EDO . . . N 4 -32.774 14.293 -4.314 1 83.64 ? HO2 EDO 302 B 1 
#
_model_server_stats.io_time_ms              0 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    13 
_model_server_stats.query_time_ms           378 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           10 
#