data_6U4A # _model_server_result.job_id BBMjMB8zfJ3PKFgtH9ODPQ _model_server_result.datetime_utc '2025-01-10 20:56:24' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6u4a # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":203}' # _entry.id 6U4A # _exptl.entry_id 6U4A _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6U4A _cell.length_a 48.825 _cell.length_b 64.419 _cell.length_c 87.648 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6U4A _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall 'P 2ac 2ab' _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,D,E,F,J,M 1 1 B,C,G,H,I,K,L 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 F N N ? 4 H N N ? 4 I N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 C C ACE 1 D ACE 0 1_555 C N TRP 2 D TRP 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale2 C CH3 ACE 1 D ACE 0 1_555 C SG CYS 12 D CYS 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.766 ? covale ? covale3 C C PRO 6 D PRO 5 1_555 C N ALY 7 D ALY 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? covale ? covale4 C C ALY 7 D ALY 6 1_555 C N VAL 8 D VAL 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale5 C C LYS 9 D LYS 8 1_555 C N ALY 10 D ALY 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale6 C C ALY 10 D ALY 9 1_555 C N GLY 11 D GLY 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale7 C C CYS 12 D CYS 11 1_555 C N NH2 13 D NH2 12 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale8 D C ACE 1 C ACE 0 1_555 D N TRP 2 C TRP 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale9 D CH3 ACE 1 C ACE 0 1_555 D SG CYS 12 C CYS 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.769 ? covale ? covale10 D C PRO 6 C PRO 5 1_555 D N ALY 7 C ALY 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.335 ? covale ? covale11 D C ALY 7 C ALY 6 1_555 D N VAL 8 C VAL 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale12 D C LYS 9 C LYS 8 1_555 D N ALY 10 C ALY 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale13 D C ALY 10 C ALY 9 1_555 D N GLY 11 C GLY 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale14 D C CYS 12 C CYS 11 1_555 D N NH2 13 C NH2 12 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 163 n n C1 C2 GOL sing 164 n n C1 H11 GOL sing 165 n n C1 H12 GOL sing 166 n n O1 HO1 GOL sing 167 n n C2 O2 GOL sing 168 n n C2 C3 GOL sing 169 n n C2 H2 GOL sing 170 n n O2 HO2 GOL sing 171 n n C3 O3 GOL sing 172 n n C3 H31 GOL sing 173 n n C3 H32 GOL sing 174 n n O3 HO3 GOL sing 175 n n # _atom_sites.entry_id 6U4A _atom_sites.fract_transf_matrix[1][1] 0.020481 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015523 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011409 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 SO4 A 1 201 1 SO4 SO4 . F 4 GOL A 1 202 3 GOL GOL . G 3 SO4 B 1 201 2 SO4 SO4 . H 4 GOL B 1 202 1 GOL GOL . I 4 GOL B 1 203 2 GOL GOL . J 5 HOH A 1 301 219 HOH HOH . J 5 HOH A 2 302 38 HOH HOH . J 5 HOH A 3 303 165 HOH HOH . J 5 HOH A 4 304 166 HOH HOH . J 5 HOH A 5 305 89 HOH HOH . J 5 HOH A 6 306 61 HOH HOH . J 5 HOH A 7 307 144 HOH HOH . J 5 HOH A 8 308 201 HOH HOH . J 5 HOH A 9 309 84 HOH HOH . J 5 HOH A 10 310 192 HOH HOH . J 5 HOH A 11 311 110 HOH HOH . J 5 HOH A 12 312 34 HOH HOH . J 5 HOH A 13 313 194 HOH HOH . J 5 HOH A 14 314 7 HOH HOH . J 5 HOH A 15 315 96 HOH HOH . J 5 HOH A 16 316 2 HOH HOH . J 5 HOH A 17 317 108 HOH HOH . J 5 HOH A 18 318 20 HOH HOH . J 5 HOH A 19 319 67 HOH HOH . J 5 HOH A 20 320 76 HOH HOH . J 5 HOH A 21 321 53 HOH HOH . J 5 HOH A 22 322 80 HOH HOH . J 5 HOH A 23 323 9 HOH HOH . J 5 HOH A 24 324 28 HOH HOH . J 5 HOH A 25 325 19 HOH HOH . J 5 HOH A 26 326 42 HOH HOH . J 5 HOH A 27 327 203 HOH HOH . J 5 HOH A 28 328 29 HOH HOH . J 5 HOH A 29 329 129 HOH HOH . J 5 HOH A 30 330 209 HOH HOH . J 5 HOH A 31 331 183 HOH HOH . J 5 HOH A 32 332 16 HOH HOH . J 5 HOH A 33 333 35 HOH HOH . J 5 HOH A 34 334 179 HOH HOH . J 5 HOH A 35 335 139 HOH HOH . J 5 HOH A 36 336 6 HOH HOH . J 5 HOH A 37 337 74 HOH HOH . J 5 HOH A 38 338 56 HOH HOH . J 5 HOH A 39 339 69 HOH HOH . J 5 HOH A 40 340 64 HOH HOH . J 5 HOH A 41 341 39 HOH HOH . J 5 HOH A 42 342 25 HOH HOH . J 5 HOH A 43 343 10 HOH HOH . J 5 HOH A 44 344 5 HOH HOH . J 5 HOH A 45 345 55 HOH HOH . J 5 HOH A 46 346 91 HOH HOH . J 5 HOH A 47 347 116 HOH HOH . J 5 HOH A 48 348 137 HOH HOH . J 5 HOH A 49 349 18 HOH HOH . J 5 HOH A 50 350 73 HOH HOH . J 5 HOH A 51 351 103 HOH HOH . J 5 HOH A 52 352 50 HOH HOH . J 5 HOH A 53 353 33 HOH HOH . J 5 HOH A 54 354 213 HOH HOH . J 5 HOH A 55 355 17 HOH HOH . J 5 HOH A 56 356 186 HOH HOH . J 5 HOH A 57 357 104 HOH HOH . J 5 HOH A 58 358 141 HOH HOH . J 5 HOH A 59 359 71 HOH HOH . J 5 HOH A 60 360 43 HOH HOH . J 5 HOH A 61 361 143 HOH HOH . J 5 HOH A 62 362 46 HOH HOH . J 5 HOH A 63 363 15 HOH HOH . J 5 HOH A 64 364 222 HOH HOH . J 5 HOH A 65 365 60 HOH HOH . J 5 HOH A 66 366 160 HOH HOH . J 5 HOH A 67 367 171 HOH HOH . J 5 HOH A 68 368 225 HOH HOH . J 5 HOH A 69 369 106 HOH HOH . J 5 HOH A 70 370 167 HOH HOH . J 5 HOH A 71 371 204 HOH HOH . J 5 HOH A 72 372 172 HOH HOH . J 5 HOH A 73 373 178 HOH HOH . J 5 HOH A 74 374 200 HOH HOH . J 5 HOH A 75 375 124 HOH HOH . J 5 HOH A 76 376 221 HOH HOH . J 5 HOH A 77 377 196 HOH HOH . J 5 HOH A 78 378 182 HOH HOH . J 5 HOH A 79 379 63 HOH HOH . J 5 HOH A 80 380 86 HOH HOH . J 5 HOH A 81 381 198 HOH HOH . J 5 HOH A 82 382 208 HOH HOH . J 5 HOH A 83 383 207 HOH HOH . J 5 HOH A 84 384 87 HOH HOH . J 5 HOH A 85 385 120 HOH HOH . J 5 HOH A 86 386 146 HOH HOH . J 5 HOH A 87 387 134 HOH HOH . K 5 HOH B 1 301 118 HOH HOH . K 5 HOH B 2 302 121 HOH HOH . K 5 HOH B 3 303 220 HOH HOH . K 5 HOH B 4 304 26 HOH HOH . K 5 HOH B 5 305 72 HOH HOH . K 5 HOH B 6 306 11 HOH HOH . K 5 HOH B 7 307 205 HOH HOH . K 5 HOH B 8 308 51 HOH HOH . K 5 HOH B 9 309 68 HOH HOH . K 5 HOH B 10 310 158 HOH HOH . K 5 HOH B 11 311 125 HOH HOH . K 5 HOH B 12 312 99 HOH HOH . K 5 HOH B 13 313 70 HOH HOH . K 5 HOH B 14 314 12 HOH HOH . K 5 HOH B 15 315 24 HOH HOH . K 5 HOH B 16 316 175 HOH HOH . K 5 HOH B 17 317 65 HOH HOH . K 5 HOH B 18 318 77 HOH HOH . K 5 HOH B 19 319 90 HOH HOH . K 5 HOH B 20 320 81 HOH HOH . K 5 HOH B 21 321 78 HOH HOH . K 5 HOH B 22 322 1 HOH HOH . K 5 HOH B 23 323 133 HOH HOH . K 5 HOH B 24 324 162 HOH HOH . K 5 HOH B 25 325 62 HOH HOH . K 5 HOH B 26 326 57 HOH HOH . K 5 HOH B 27 327 153 HOH HOH . K 5 HOH B 28 328 40 HOH HOH . K 5 HOH B 29 329 176 HOH HOH . K 5 HOH B 30 330 49 HOH HOH . K 5 HOH B 31 331 93 HOH HOH . K 5 HOH B 32 332 30 HOH HOH . K 5 HOH B 33 333 98 HOH HOH . K 5 HOH B 34 334 188 HOH HOH . K 5 HOH B 35 335 112 HOH HOH . K 5 HOH B 36 336 107 HOH HOH . K 5 HOH B 37 337 44 HOH HOH . K 5 HOH B 38 338 52 HOH HOH . K 5 HOH B 39 339 105 HOH HOH . K 5 HOH B 40 340 36 HOH HOH . K 5 HOH B 41 341 97 HOH HOH . K 5 HOH B 42 342 31 HOH HOH . K 5 HOH B 43 343 41 HOH HOH . K 5 HOH B 44 344 131 HOH HOH . K 5 HOH B 45 345 22 HOH HOH . K 5 HOH B 46 346 4 HOH HOH . K 5 HOH B 47 347 3 HOH HOH . K 5 HOH B 48 348 122 HOH HOH . K 5 HOH B 49 349 54 HOH HOH . K 5 HOH B 50 350 37 HOH HOH . K 5 HOH B 51 351 147 HOH HOH . K 5 HOH B 52 352 85 HOH HOH . K 5 HOH B 53 353 59 HOH HOH . K 5 HOH B 54 354 95 HOH HOH . K 5 HOH B 55 355 100 HOH HOH . K 5 HOH B 56 356 128 HOH HOH . K 5 HOH B 57 357 13 HOH HOH . K 5 HOH B 58 358 180 HOH HOH . K 5 HOH B 59 359 8 HOH HOH . K 5 HOH B 60 360 181 HOH HOH . K 5 HOH B 61 361 32 HOH HOH . K 5 HOH B 62 362 174 HOH HOH . K 5 HOH B 63 363 94 HOH HOH . K 5 HOH B 64 364 113 HOH HOH . K 5 HOH B 65 365 45 HOH HOH . K 5 HOH B 66 366 111 HOH HOH . K 5 HOH B 67 367 202 HOH HOH . K 5 HOH B 68 368 163 HOH HOH . K 5 HOH B 69 369 102 HOH HOH . K 5 HOH B 70 370 155 HOH HOH . K 5 HOH B 71 371 92 HOH HOH . K 5 HOH B 72 372 184 HOH HOH . K 5 HOH B 73 373 88 HOH HOH . K 5 HOH B 74 374 119 HOH HOH . K 5 HOH B 75 375 197 HOH HOH . K 5 HOH B 76 376 101 HOH HOH . K 5 HOH B 77 377 151 HOH HOH . K 5 HOH B 78 378 75 HOH HOH . K 5 HOH B 79 379 218 HOH HOH . K 5 HOH B 80 380 210 HOH HOH . K 5 HOH B 81 381 195 HOH HOH . K 5 HOH B 82 382 58 HOH HOH . K 5 HOH B 83 383 149 HOH HOH . K 5 HOH B 84 384 224 HOH HOH . K 5 HOH B 85 385 173 HOH HOH . K 5 HOH B 86 386 154 HOH HOH . K 5 HOH B 87 387 127 HOH HOH . K 5 HOH B 88 388 159 HOH HOH . K 5 HOH B 89 389 142 HOH HOH . K 5 HOH B 90 390 123 HOH HOH . K 5 HOH B 91 391 109 HOH HOH . K 5 HOH B 92 392 140 HOH HOH . K 5 HOH B 93 393 79 HOH HOH . K 5 HOH B 94 394 132 HOH HOH . K 5 HOH B 95 395 130 HOH HOH . K 5 HOH B 96 396 169 HOH HOH . K 5 HOH B 97 397 212 HOH HOH . K 5 HOH B 98 398 214 HOH HOH . L 5 HOH D 1 101 170 HOH HOH . L 5 HOH D 2 102 23 HOH HOH . L 5 HOH D 3 103 83 HOH HOH . L 5 HOH D 4 104 117 HOH HOH . L 5 HOH D 5 105 48 HOH HOH . L 5 HOH D 6 106 126 HOH HOH . L 5 HOH D 7 107 223 HOH HOH . L 5 HOH D 8 108 27 HOH HOH . L 5 HOH D 9 109 138 HOH HOH . L 5 HOH D 10 110 145 HOH HOH . M 5 HOH C 1 101 66 HOH HOH . M 5 HOH C 2 102 14 HOH HOH . M 5 HOH C 3 103 21 HOH HOH . M 5 HOH C 4 104 47 HOH HOH . M 5 HOH C 5 105 164 HOH HOH . M 5 HOH C 6 106 199 HOH HOH . M 5 HOH C 7 107 115 HOH HOH . M 5 HOH C 8 108 150 HOH HOH . M 5 HOH C 9 109 114 HOH HOH . M 5 HOH C 10 110 206 HOH HOH . M 5 HOH C 11 111 168 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . I 4 17.197 12.977 -19.554 1 26.27 ? C1 GOL 203 B 1 HETATM 2 O O1 GOL . . . I 4 18.406 12.812 -20.237 1 26.82 ? O1 GOL 203 B 1 HETATM 3 C C2 GOL . . . I 4 17.347 14.261 -18.707 1 33.57 ? C2 GOL 203 B 1 HETATM 4 O O2 GOL . . . I 4 17.547 15.382 -19.497 1 33.48 ? O2 GOL 203 B 1 HETATM 5 C C3 GOL . . . I 4 16.05 14.356 -17.887 1 36.23 ? C3 GOL 203 B 1 HETATM 6 O O3 GOL . . . I 4 16.399 14.029 -16.582 1 42.02 ? O3 GOL 203 B 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 327 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 6 #