data_6U5A # _model_server_result.job_id Nnmj0bq53jfLD2bmoPV3Nw _model_server_result.datetime_utc '2024-11-25 06:32:08' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6u5a # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":605}' # _entry.id 6U5A # _exptl.entry_id 6U5A _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 216.233 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(6-methoxynaphthalen-2-yl)acetic acid' _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 6U5A _cell.length_a 94.288 _cell.length_b 94.288 _cell.length_c 142.022 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6U5A _symmetry.cell_setting ? _symmetry.Int_Tables_number 169 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 61' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 F N N ? 3 G N N ? 3 H N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 53 A CYS 53 1_555 A SG CYS 62 A CYS 62 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.047 ? disulf ? disulf2 A SG CYS 75 A CYS 75 1_555 A SG CYS 91 A CYS 91 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? disulf ? disulf3 A SG CYS 90 A CYS 90 1_555 A SG CYS 101 A CYS 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? disulf ? disulf4 A SG CYS 123 A CYS 123 1_555 A SG CYS 168 A CYS 168 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf5 A SG CYS 167 A CYS 167 1_555 A SG CYS 176 A CYS 176 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.044 ? disulf ? disulf6 A SG CYS 199 A CYS 199 1_555 A SG CYS 245 A CYS 245 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf7 A SG CYS 244 A CYS 244 1_555 A SG CYS 252 A CYS 252 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? disulf ? disulf8 A SG CYS 264 A CYS 264 1_555 A SG CYS 278 A CYS 278 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? disulf ? disulf9 A SG CYS 277 A CYS 277 1_555 A SG CYS 288 A CYS 288 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? disulf ? disulf10 A SG CYS 315 A CYS 315 1_555 A SG CYS 360 A CYS 360 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? disulf ? disulf11 A SG CYS 359 A CYS 359 1_555 A SG CYS 368 A CYS 368 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.045 ? disulf ? disulf12 A SG CYS 391 A CYS 391 1_555 A SG CYS 437 A CYS 437 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.067 ? disulf ? disulf13 A SG CYS 436 A CYS 436 1_555 A SG CYS 447 A CYS 447 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf14 A SG CYS 460 A CYS 460 1_555 A SG CYS 476 A CYS 476 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf15 A SG CYS 475 A CYS 475 1_555 A SG CYS 486 A CYS 486 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.071 ? disulf ? disulf16 A SG CYS 513 A CYS 513 1_555 A SG CYS 558 A CYS 558 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? disulf ? disulf17 A SG CYS 557 A CYS 557 1_555 A SG CYS 566 A CYS 566 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.051 ? # _chem_comp.formula 'C13 H12 O3' _chem_comp.formula_weight 216.233 _chem_comp.id PWY _chem_comp.mon_nstd_flag . _chem_comp.name '(6-methoxynaphthalen-2-yl)acetic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C5 C6 PWY doub 258 n y C5 C4 PWY sing 259 n y C6 C1 PWY sing 260 n y O1 C12 PWY doub 261 n n O C1 PWY sing 262 n n O C PWY sing 263 n n C4 C7 PWY doub 264 n y C4 C3 PWY sing 265 n y C7 C8 PWY sing 266 n y C1 C2 PWY doub 267 n y C12 O2 PWY sing 268 n n C12 C11 PWY sing 269 n n C8 C11 PWY sing 270 n n C8 C9 PWY doub 271 n y C3 C2 PWY sing 272 n y C3 C10 PWY doub 273 n y C9 C10 PWY sing 274 n y C10 H1 PWY sing 275 n n C11 H2 PWY sing 276 n n C11 H3 PWY sing 277 n n O2 H4 PWY sing 278 n n C9 H5 PWY sing 279 n n C2 H6 PWY sing 280 n n C7 H7 PWY sing 281 n n C5 H8 PWY sing 282 n n C6 H9 PWY sing 283 n n C H10 PWY sing 284 n n C H11 PWY sing 285 n n C H12 PWY sing 286 n n # _atom_sites.entry_id 6U5A _atom_sites.fract_transf_matrix[1][1] 0.010606 _atom_sites.fract_transf_matrix[1][2] 0.006123 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012247 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007041 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 UNX A 1 601 601 UNX UNX . C 2 UNX A 1 602 701 UNX UNX . D 2 UNX A 1 603 801 UNX UNX . E 2 UNX A 1 604 901 UNX UNX . F 3 PWY A 1 605 1 PWY KWA . G 3 PWY A 1 606 2 PWY KWA . H 3 PWY A 1 607 3 PWY KWA . I 4 SO4 A 1 608 1 SO4 SO4 . J 4 SO4 A 1 609 2 SO4 SO4 . K 4 SO4 A 1 610 3 SO4 SO4 . L 4 SO4 A 1 611 4 SO4 SO4 . M 2 UNX A 1 612 1 UNX UNX . N 2 UNX A 1 613 2 UNX UNX . O 2 UNX A 1 614 3 UNX UNX . P 5 HOH A 1 701 19 HOH HOH . P 5 HOH A 2 702 158 HOH HOH . P 5 HOH A 3 703 109 HOH HOH . P 5 HOH A 4 704 156 HOH HOH . P 5 HOH A 5 705 5 HOH HOH . P 5 HOH A 6 706 39 HOH HOH . P 5 HOH A 7 707 76 HOH HOH . P 5 HOH A 8 708 24 HOH HOH . P 5 HOH A 9 709 161 HOH HOH . P 5 HOH A 10 710 36 HOH HOH . P 5 HOH A 11 711 22 HOH HOH . P 5 HOH A 12 712 160 HOH HOH . P 5 HOH A 13 713 139 HOH HOH . P 5 HOH A 14 714 111 HOH HOH . P 5 HOH A 15 715 31 HOH HOH . P 5 HOH A 16 716 96 HOH HOH . P 5 HOH A 17 717 16 HOH HOH . P 5 HOH A 18 718 58 HOH HOH . P 5 HOH A 19 719 77 HOH HOH . P 5 HOH A 20 720 25 HOH HOH . P 5 HOH A 21 721 153 HOH HOH . P 5 HOH A 22 722 33 HOH HOH . P 5 HOH A 23 723 92 HOH HOH . P 5 HOH A 24 724 20 HOH HOH . P 5 HOH A 25 725 134 HOH HOH . P 5 HOH A 26 726 146 HOH HOH . P 5 HOH A 27 727 51 HOH HOH . P 5 HOH A 28 728 64 HOH HOH . P 5 HOH A 29 729 147 HOH HOH . P 5 HOH A 30 730 117 HOH HOH . P 5 HOH A 31 731 41 HOH HOH . P 5 HOH A 32 732 119 HOH HOH . P 5 HOH A 33 733 18 HOH HOH . P 5 HOH A 34 734 114 HOH HOH . P 5 HOH A 35 735 138 HOH HOH . P 5 HOH A 36 736 48 HOH HOH . P 5 HOH A 37 737 61 HOH HOH . P 5 HOH A 38 738 26 HOH HOH . P 5 HOH A 39 739 104 HOH HOH . P 5 HOH A 40 740 43 HOH HOH . P 5 HOH A 41 741 155 HOH HOH . P 5 HOH A 42 742 55 HOH HOH . P 5 HOH A 43 743 14 HOH HOH . P 5 HOH A 44 744 121 HOH HOH . P 5 HOH A 45 745 101 HOH HOH . P 5 HOH A 46 746 62 HOH HOH . P 5 HOH A 47 747 3 HOH HOH . P 5 HOH A 48 748 152 HOH HOH . P 5 HOH A 49 749 27 HOH HOH . P 5 HOH A 50 750 21 HOH HOH . P 5 HOH A 51 751 46 HOH HOH . P 5 HOH A 52 752 143 HOH HOH . P 5 HOH A 53 753 110 HOH HOH . P 5 HOH A 54 754 130 HOH HOH . P 5 HOH A 55 755 137 HOH HOH . P 5 HOH A 56 756 141 HOH HOH . P 5 HOH A 57 757 123 HOH HOH . P 5 HOH A 58 758 164 HOH HOH . P 5 HOH A 59 759 49 HOH HOH . P 5 HOH A 60 760 69 HOH HOH . P 5 HOH A 61 761 132 HOH HOH . P 5 HOH A 62 762 11 HOH HOH . P 5 HOH A 63 763 98 HOH HOH . P 5 HOH A 64 764 12 HOH HOH . P 5 HOH A 65 765 162 HOH HOH . P 5 HOH A 66 766 142 HOH HOH . P 5 HOH A 67 767 50 HOH HOH . P 5 HOH A 68 768 47 HOH HOH . P 5 HOH A 69 769 157 HOH HOH . P 5 HOH A 70 770 140 HOH HOH . P 5 HOH A 71 771 159 HOH HOH . P 5 HOH A 72 772 74 HOH HOH . P 5 HOH A 73 773 86 HOH HOH . P 5 HOH A 74 774 144 HOH HOH . P 5 HOH A 75 775 44 HOH HOH . P 5 HOH A 76 776 131 HOH HOH . P 5 HOH A 77 777 133 HOH HOH . P 5 HOH A 78 778 154 HOH HOH . P 5 HOH A 79 779 108 HOH HOH . P 5 HOH A 80 780 6 HOH HOH . P 5 HOH A 81 781 115 HOH HOH . P 5 HOH A 82 782 87 HOH HOH . P 5 HOH A 83 783 112 HOH HOH . P 5 HOH A 84 784 122 HOH HOH . P 5 HOH A 85 785 40 HOH HOH . P 5 HOH A 86 786 85 HOH HOH . P 5 HOH A 87 787 103 HOH HOH . P 5 HOH A 88 788 118 HOH HOH . P 5 HOH A 89 789 145 HOH HOH . P 5 HOH A 90 790 78 HOH HOH . P 5 HOH A 91 791 106 HOH HOH . P 5 HOH A 92 792 116 HOH HOH . P 5 HOH A 93 793 165 HOH HOH . P 5 HOH A 94 794 136 HOH HOH . P 5 HOH A 95 795 163 HOH HOH . P 5 HOH A 96 796 120 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C10 PWY . . . F 3 36.867 0.044 70.337 1 33.89 ? C10 PWY 605 A 1 HETATM 2 C C11 PWY . . . F 3 33.547 1.553 69.351 1 52.8 ? C11 PWY 605 A 1 HETATM 3 O O1 PWY . . . F 3 32.031 1.212 67.523 1 39.94 ? O1 PWY 605 A 1 HETATM 4 C C12 PWY . . . F 3 32.575 0.763 68.519 1 65.21 ? C12 PWY 605 A 1 HETATM 5 O O2 PWY . . . F 3 32.365 -0.444 68.989 1 52.89 ? O2 PWY 605 A 1 HETATM 6 C C8 PWY . . . F 3 34.984 1.089 69.269 1 47.27 ? C8 PWY 605 A 1 HETATM 7 C C9 PWY . . . F 3 35.538 0.351 70.312 1 39.16 ? C9 PWY 605 A 1 HETATM 8 C C3 PWY . . . F 3 37.73 0.462 69.296 1 36.03 ? C3 PWY 605 A 1 HETATM 9 C C2 PWY . . . F 3 39.128 0.239 69.327 1 43.69 ? C2 PWY 605 A 1 HETATM 10 C C7 PWY . . . F 3 35.788 1.47 68.224 1 49.05 ? C7 PWY 605 A 1 HETATM 11 C C4 PWY . . . F 3 37.171 1.179 68.211 1 40.7 ? C4 PWY 605 A 1 HETATM 12 C C5 PWY . . . F 3 38.032 1.635 67.184 1 51.59 ? C5 PWY 605 A 1 HETATM 13 C C6 PWY . . . F 3 39.373 1.415 67.244 1 43.1 ? C6 PWY 605 A 1 HETATM 14 C C1 PWY . . . F 3 39.922 0.728 68.316 1 48.78 ? C1 PWY 605 A 1 HETATM 15 O O PWY . . . F 3 41.287 0.684 68.195 1 57.6 ? O PWY 605 A 1 HETATM 16 C C PWY . . . F 3 42.05 0.063 69.229 1 68.06 ? C PWY 605 A 1 # _model_server_stats.io_time_ms 20 _model_server_stats.parse_time_ms 18 _model_server_stats.create_model_time_ms 21 _model_server_stats.query_time_ms 297 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 16 #