data_6U5L # _model_server_result.job_id 4GRs6k38AmRIrOBfm1eLxQ _model_server_result.datetime_utc '2024-11-09 23:23:30' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6u5l # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":304}' # _entry.id 6U5L # _exptl.entry_id 6U5L _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 6U5L _cell.length_a 90.421 _cell.length_b 90.421 _cell.length_c 188.956 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6U5L _symmetry.cell_setting ? _symmetry.Int_Tables_number 179 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 65 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 D N N ? 3 E N N ? 3 F N N # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 184 n n C1 C2 GOL sing 185 n n C1 H11 GOL sing 186 n n C1 H12 GOL sing 187 n n O1 HO1 GOL sing 188 n n C2 O2 GOL sing 189 n n C2 C3 GOL sing 190 n n C2 H2 GOL sing 191 n n O2 HO2 GOL sing 192 n n C3 O3 GOL sing 193 n n C3 H31 GOL sing 194 n n C3 H32 GOL sing 195 n n O3 HO3 GOL sing 196 n n # _atom_sites.entry_id 6U5L _atom_sites.fract_transf_matrix[1][1] 0.011059 _atom_sites.fract_transf_matrix[1][2] 0.006385 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01277 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005292 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 3RJ A 1 301 301 3RJ 3RJ . C 3 GOL A 1 302 302 GOL GOL . D 3 GOL A 1 303 303 GOL GOL . E 3 GOL A 1 304 304 GOL GOL . F 3 GOL A 1 305 305 GOL GOL . G 4 PEG A 1 306 306 PEG PEG . H 5 HOH A 1 401 401 HOH HOH . H 5 HOH A 2 402 402 HOH HOH . H 5 HOH A 3 403 403 HOH HOH . H 5 HOH A 4 404 404 HOH HOH . H 5 HOH A 5 405 405 HOH HOH . H 5 HOH A 6 406 406 HOH HOH . H 5 HOH A 7 407 407 HOH HOH . H 5 HOH A 8 408 408 HOH HOH . H 5 HOH A 9 409 409 HOH HOH . H 5 HOH A 10 410 410 HOH HOH . H 5 HOH A 11 411 411 HOH HOH . H 5 HOH A 12 412 412 HOH HOH . H 5 HOH A 13 413 413 HOH HOH . H 5 HOH A 14 414 414 HOH HOH . H 5 HOH A 15 415 415 HOH HOH . H 5 HOH A 16 416 416 HOH HOH . H 5 HOH A 17 417 417 HOH HOH . H 5 HOH A 18 418 418 HOH HOH . H 5 HOH A 19 419 419 HOH HOH . H 5 HOH A 20 420 420 HOH HOH . H 5 HOH A 21 421 421 HOH HOH . H 5 HOH A 22 422 422 HOH HOH . H 5 HOH A 23 423 423 HOH HOH . H 5 HOH A 24 424 424 HOH HOH . H 5 HOH A 25 425 425 HOH HOH . H 5 HOH A 26 426 426 HOH HOH . H 5 HOH A 27 427 427 HOH HOH . H 5 HOH A 28 428 428 HOH HOH . H 5 HOH A 29 429 429 HOH HOH . H 5 HOH A 30 430 430 HOH HOH . H 5 HOH A 31 431 431 HOH HOH . H 5 HOH A 32 432 432 HOH HOH . H 5 HOH A 33 433 433 HOH HOH . H 5 HOH A 34 434 434 HOH HOH . H 5 HOH A 35 435 435 HOH HOH . H 5 HOH A 36 436 436 HOH HOH . H 5 HOH A 37 437 437 HOH HOH . H 5 HOH A 38 438 438 HOH HOH . H 5 HOH A 39 439 439 HOH HOH . H 5 HOH A 40 440 440 HOH HOH . H 5 HOH A 41 441 441 HOH HOH . H 5 HOH A 42 442 442 HOH HOH . H 5 HOH A 43 443 443 HOH HOH . H 5 HOH A 44 444 444 HOH HOH . H 5 HOH A 45 445 445 HOH HOH . H 5 HOH A 46 446 446 HOH HOH . H 5 HOH A 47 447 447 HOH HOH . H 5 HOH A 48 448 448 HOH HOH . H 5 HOH A 49 449 449 HOH HOH . H 5 HOH A 50 450 450 HOH HOH . H 5 HOH A 51 451 451 HOH HOH . H 5 HOH A 52 452 452 HOH HOH . H 5 HOH A 53 453 453 HOH HOH . H 5 HOH A 54 454 454 HOH HOH . H 5 HOH A 55 455 455 HOH HOH . H 5 HOH A 56 456 456 HOH HOH . H 5 HOH A 57 457 457 HOH HOH . H 5 HOH A 58 458 458 HOH HOH . H 5 HOH A 59 459 459 HOH HOH . H 5 HOH A 60 460 460 HOH HOH . H 5 HOH A 61 461 461 HOH HOH . H 5 HOH A 62 462 462 HOH HOH . H 5 HOH A 63 463 463 HOH HOH . H 5 HOH A 64 464 464 HOH HOH . H 5 HOH A 65 465 465 HOH HOH . H 5 HOH A 66 466 466 HOH HOH . H 5 HOH A 67 467 467 HOH HOH . H 5 HOH A 68 468 468 HOH HOH . H 5 HOH A 69 469 469 HOH HOH . H 5 HOH A 70 470 470 HOH HOH . H 5 HOH A 71 471 471 HOH HOH . H 5 HOH A 72 472 472 HOH HOH . H 5 HOH A 73 473 473 HOH HOH . H 5 HOH A 74 474 474 HOH HOH . H 5 HOH A 75 475 475 HOH HOH . H 5 HOH A 76 476 476 HOH HOH . H 5 HOH A 77 477 477 HOH HOH . H 5 HOH A 78 478 478 HOH HOH . H 5 HOH A 79 479 479 HOH HOH . H 5 HOH A 80 480 480 HOH HOH . H 5 HOH A 81 481 481 HOH HOH . H 5 HOH A 82 482 482 HOH HOH . H 5 HOH A 83 483 483 HOH HOH . H 5 HOH A 84 484 484 HOH HOH . H 5 HOH A 85 485 485 HOH HOH . H 5 HOH A 86 486 486 HOH HOH . H 5 HOH A 87 487 487 HOH HOH . H 5 HOH A 88 488 488 HOH HOH . H 5 HOH A 89 489 489 HOH HOH . H 5 HOH A 90 490 490 HOH HOH . H 5 HOH A 91 491 491 HOH HOH . H 5 HOH A 92 492 492 HOH HOH . H 5 HOH A 93 493 493 HOH HOH . H 5 HOH A 94 494 494 HOH HOH . H 5 HOH A 95 495 495 HOH HOH . H 5 HOH A 96 496 496 HOH HOH . H 5 HOH A 97 497 497 HOH HOH . H 5 HOH A 98 498 498 HOH HOH . H 5 HOH A 99 499 499 HOH HOH . H 5 HOH A 100 500 500 HOH HOH . H 5 HOH A 101 501 501 HOH HOH . H 5 HOH A 102 502 502 HOH HOH . H 5 HOH A 103 503 503 HOH HOH . H 5 HOH A 104 504 504 HOH HOH . H 5 HOH A 105 505 505 HOH HOH . H 5 HOH A 106 506 506 HOH HOH . H 5 HOH A 107 507 507 HOH HOH . H 5 HOH A 108 508 508 HOH HOH . H 5 HOH A 109 509 509 HOH HOH . H 5 HOH A 110 510 510 HOH HOH . H 5 HOH A 111 511 511 HOH HOH . H 5 HOH A 112 512 512 HOH HOH . H 5 HOH A 113 513 513 HOH HOH . H 5 HOH A 114 514 514 HOH HOH . H 5 HOH A 115 515 515 HOH HOH . H 5 HOH A 116 516 516 HOH HOH . H 5 HOH A 117 517 517 HOH HOH . H 5 HOH A 118 518 518 HOH HOH . H 5 HOH A 119 519 519 HOH HOH . H 5 HOH A 120 520 520 HOH HOH . H 5 HOH A 121 521 521 HOH HOH . H 5 HOH A 122 522 522 HOH HOH . H 5 HOH A 123 523 523 HOH HOH . H 5 HOH A 124 524 524 HOH HOH . H 5 HOH A 125 525 525 HOH HOH . H 5 HOH A 126 526 526 HOH HOH . H 5 HOH A 127 527 527 HOH HOH . H 5 HOH A 128 528 528 HOH HOH . H 5 HOH A 129 529 529 HOH HOH . H 5 HOH A 130 530 530 HOH HOH . H 5 HOH A 131 531 531 HOH HOH . H 5 HOH A 132 532 532 HOH HOH . H 5 HOH A 133 533 533 HOH HOH . H 5 HOH A 134 534 534 HOH HOH . H 5 HOH A 135 535 535 HOH HOH . H 5 HOH A 136 536 536 HOH HOH . H 5 HOH A 137 537 537 HOH HOH . H 5 HOH A 138 538 538 HOH HOH . H 5 HOH A 139 539 539 HOH HOH . H 5 HOH A 140 540 540 HOH HOH . H 5 HOH A 141 541 541 HOH HOH . H 5 HOH A 142 542 542 HOH HOH . H 5 HOH A 143 543 543 HOH HOH . H 5 HOH A 144 544 544 HOH HOH . H 5 HOH A 145 545 545 HOH HOH . H 5 HOH A 146 546 546 HOH HOH . H 5 HOH A 147 547 547 HOH HOH . H 5 HOH A 148 548 548 HOH HOH . H 5 HOH A 149 549 549 HOH HOH . H 5 HOH A 150 550 550 HOH HOH . H 5 HOH A 151 551 551 HOH HOH . H 5 HOH A 152 552 552 HOH HOH . H 5 HOH A 153 553 553 HOH HOH . H 5 HOH A 154 554 554 HOH HOH . H 5 HOH A 155 555 555 HOH HOH . H 5 HOH A 156 556 556 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . E 3 19.062 47.174 80.918 1 65.1 ? C1 GOL 304 A 1 HETATM 2 O O1 GOL . . . E 3 18.425 48.324 80.406 1 61.46 ? O1 GOL 304 A 1 HETATM 3 C C2 GOL . . . E 3 20.57 47.3 80.736 1 69.18 ? C2 GOL 304 A 1 HETATM 4 O O2 GOL . . . E 3 21.155 47.727 81.943 1 72.73 ? O2 GOL 304 A 1 HETATM 5 C C3 GOL . . . E 3 21.174 45.964 80.323 1 68.9 ? C3 GOL 304 A 1 HETATM 6 O O3 GOL . . . E 3 22.58 46.041 80.407 1 67.89 ? O3 GOL 304 A 1 HETATM 7 H H11 GOL . . . E 3 18.827 47.064 81.977 1 78.12 ? H11 GOL 304 A 1 HETATM 8 H H12 GOL . . . E 3 18.7 46.289 80.395 1 78.12 ? H12 GOL 304 A 1 HETATM 9 H HO1 GOL . . . E 3 17.453 48.212 80.464 1 73.75 ? HO1 GOL 304 A 1 HETATM 10 H H2 GOL . . . E 3 20.767 48.03 79.951 1 83.02 ? H2 GOL 304 A 1 HETATM 11 H HO2 GOL . . . E 3 20.995 47.056 82.639 1 87.28 ? HO2 GOL 304 A 1 HETATM 12 H H31 GOL . . . E 3 20.808 45.174 80.979 1 82.68 ? H31 GOL 304 A 1 HETATM 13 H H32 GOL . . . E 3 20.878 45.724 79.302 1 82.68 ? H32 GOL 304 A 1 HETATM 14 H HO3 GOL . . . E 3 22.969 45.174 80.167 1 81.47 ? HO3 GOL 304 A 1 # _model_server_stats.io_time_ms 16 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 328 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 14 #