data_6U5R # _model_server_result.job_id iDKXsE_xNxWLAjFV0FR_XA _model_server_result.datetime_utc '2024-11-05 05:05:21' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6u5r # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"L","auth_seq_id":401}' # _entry.id 6U5R # _exptl.entry_id 6U5R _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 40.078 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CALCIUM ION' _entity.pdbx_number_of_molecules 8 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6U5R _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 6U5R _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details octameric _pdbx_struct_assembly.oligomeric_count 8 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 I N N ? 2 J N N ? 2 K N N ? 2 L N N ? 2 M N N ? 2 N N N ? 2 O N N ? 2 P N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD1 ASP 184 A ASP 184 1_555 I CA CA . A CA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.371 ? metalc ? metalc2 A OD2 ASP 184 A ASP 184 1_555 I CA CA . A CA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.069 ? metalc ? metalc3 I CA CA . A CA 401 1_555 Q O HOH . A HOH 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.286 ? metalc ? metalc4 B OD2 ASP 184 B ASP 184 1_555 J CA CA . B CA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.364 ? metalc ? metalc5 B OE1 GLU 210 B GLU 210 1_555 J CA CA . B CA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.989 ? metalc ? metalc6 C OD1 ASP 184 C ASP 184 1_555 K CA CA . C CA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.371 ? metalc ? metalc7 C OD2 ASP 184 C ASP 184 1_555 K CA CA . C CA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.069 ? metalc ? metalc8 K CA CA . C CA 401 1_555 S O HOH . C HOH 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.285 ? metalc ? metalc9 D OD2 ASP 184 D ASP 184 1_555 L CA CA . D CA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.364 ? metalc ? metalc10 D OE1 GLU 210 D GLU 210 1_555 L CA CA . D CA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.989 ? metalc ? metalc11 E OD1 ASP 184 E ASP 184 1_555 M CA CA . E CA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.372 ? metalc ? metalc12 E OD2 ASP 184 E ASP 184 1_555 M CA CA . E CA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.069 ? metalc ? metalc13 M CA CA . E CA 401 1_555 U O HOH . E HOH 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.286 ? metalc ? metalc14 F OD2 ASP 184 F ASP 184 1_555 N CA CA . F CA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.512 ? metalc ? metalc15 F OE1 GLU 210 F GLU 210 1_555 N CA CA . F CA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.989 ? metalc ? metalc16 G OD1 ASP 184 G ASP 184 1_555 O CA CA . G CA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.371 ? metalc ? metalc17 G OD2 ASP 184 G ASP 184 1_555 O CA CA . G CA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.069 ? metalc ? metalc18 O CA CA . G CA 401 1_555 W O HOH . G HOH 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.286 ? metalc ? metalc19 H OD2 ASP 184 H ASP 184 1_555 P CA CA . H CA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.364 ? metalc ? metalc20 H OE1 GLU 210 H GLU 210 1_555 P CA CA . H CA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.989 ? # _chem_comp.formula 'Ca 2' _chem_comp.formula_weight 40.078 _chem_comp.id CA _chem_comp.mon_nstd_flag . _chem_comp.name 'CALCIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 6U5R _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code I 2 CA A 1 401 401 CA CA . J 2 CA B 1 401 401 CA CA . K 2 CA C 1 401 401 CA CA . L 2 CA D 1 401 401 CA CA . M 2 CA E 1 401 401 CA CA . N 2 CA F 1 401 401 CA CA . O 2 CA G 1 401 401 CA CA . P 2 CA H 1 401 401 CA CA . Q 3 HOH A 1 501 402 HOH HOH . R 3 HOH B 1 501 402 HOH HOH . S 3 HOH C 1 501 402 HOH HOH . T 3 HOH D 1 501 402 HOH HOH . U 3 HOH E 1 501 402 HOH HOH . V 3 HOH F 1 501 402 HOH HOH . W 3 HOH G 1 501 402 HOH HOH . X 3 HOH H 1 501 402 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol CA _atom_site.label_atom_id CA _atom_site.label_comp_id CA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id L _atom_site.label_entity_id 2 _atom_site.Cartn_x 109.521 _atom_site.Cartn_y 123.826 _atom_site.Cartn_z 160.321 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 135.35 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id CA _atom_site.auth_comp_id CA _atom_site.auth_seq_id 401 _atom_site.auth_asym_id D _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 20 _model_server_stats.query_time_ms 279 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 1 #