data_6U5U # _model_server_result.job_id bDQ68eiPX57bnW_0kVdZKQ _model_server_result.datetime_utc '2024-12-26 20:08:05' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6u5u # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":1901}' # _entry.id 6U5U # _exptl.entry_id 6U5U _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 743.405 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? dodecameric 12 'complete point assembly' 1 ? dimeric 2 'point asymmetric unit' 2 ? dimeric 2 'point asymmetric unit, std point frame' 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F 1 (1-6) A,B,C,D,E,F 2 1 A,B,C,D,E,F 3 P # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] P 'transform to point frame' ? ? -0.866094 -0.499881 -0.00007 0.499881 -0.866094 0.000213 -0.000167 0.000149 1 254.86295 68.26689 -186.55144 1 'point symmetry operation' ? ? 1 0 0 0 1 0 0 0 1 0 0 0 2 'point symmetry operation' ? ? -0.5 -0.866025 -0.000122 0.866025 -0.5 0.000368 -0.00038 0.000079 1 441.45178 118.1812 0.05616 3 'point symmetry operation' ? ? -0.5 0.866025 -0.00038 -0.866025 -0.5 0.000079 -0.000122 0.000368 1 118.37798 441.39905 -0.04596 4 'point symmetry operation' ? ? 0.500237 0.865888 0.000122 0.865888 -0.500237 0.00007 0.000122 0.00007 -1 -68.31302 118.30664 373.07386 5 'point symmetry operation' ? ? 0.499762 -0.866162 0.00038 -0.866162 -0.499763 -0.000219 0.00038 -0.000219 -1 254.84942 441.4359 373.07973 6 'point symmetry operation' ? ? -1 0.000274 0 0.000274 1 -0.000298 0 -0.000298 -1 373.10634 0.0044 373.16523 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 F N N # _struct_conn.conn_type_id covale _struct_conn.details ? _struct_conn.id covale1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id OG _struct_conn.ptnr1_label_comp_id SER _struct_conn.ptnr1_label_seq_id 180 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id SER _struct_conn.ptnr1_auth_seq_id 180 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id D _struct_conn.ptnr2_label_atom_id P24 _struct_conn.ptnr2_label_comp_id PNS _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id PNS _struct_conn.ptnr2_auth_seq_id 1902 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 1.603 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C21 H28 N7 O17 P3' _chem_comp.formula_weight 743.405 _chem_comp.id NAP _chem_comp.mon_nstd_flag . _chem_comp.name 'NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms "2'-MONOPHOSPHOADENOSINE 5'-DIPHOSPHORIBOSE" # _atom_sites.entry_id 6U5U _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 NAP A 1 1901 1901 NAP NAP . D 4 PNS A 1 1902 180 PNS GVL . E 5 FMN G 1 2101 3051 FMN FMN . F 3 NAP G 1 2102 2102 NAP NAP . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA NAP . . . C 3 111.82 209.405 194.168 1 174.83 ? PA NAP 1901 A 1 HETATM 2 O O1A NAP . . . C 3 111.923 208.377 195.203 1 72.91 -1 O1A NAP 1901 A 1 HETATM 3 O O2A NAP . . . C 3 112.613 210.64 194.302 1 116.88 ? O2A NAP 1901 A 1 HETATM 4 O O5B NAP . . . C 3 112.36 208.6 192.949 1 133.71 ? O5B NAP 1901 A 1 HETATM 5 C C5B NAP . . . C 3 113.768 208.471 192.93 1 108.52 ? C5B NAP 1901 A 1 HETATM 6 C C4B NAP . . . C 3 114.347 207.56 191.877 1 70.18 ? C4B NAP 1901 A 1 HETATM 7 O O4B NAP . . . C 3 115.538 208.099 191.404 1 68.8 ? O4B NAP 1901 A 1 HETATM 8 C C3B NAP . . . C 3 114.952 206.454 192.621 1 89.19 ? C3B NAP 1901 A 1 HETATM 9 O O3B NAP . . . C 3 114.001 205.451 192.91 1 60.98 ? O3B NAP 1901 A 1 HETATM 10 C C2B NAP . . . C 3 116.055 206.008 191.732 1 85.36 ? C2B NAP 1901 A 1 HETATM 11 O O2B NAP . . . C 3 115.681 204.846 191.024 1 108.76 ? O2B NAP 1901 A 1 HETATM 12 C C1B NAP . . . C 3 116.283 207.124 190.788 1 92.07 ? C1B NAP 1901 A 1 HETATM 13 N N9A NAP . . . C 3 117.61 207.642 190.888 1 74.6 ? N9A NAP 1901 A 1 HETATM 14 C C8A NAP . . . C 3 118.115 208.192 191.944 1 86.99 ? C8A NAP 1901 A 1 HETATM 15 N N7A NAP . . . C 3 119.356 208.605 191.685 1 69.92 ? N7A NAP 1901 A 1 HETATM 16 C C5A NAP . . . C 3 119.605 208.295 190.458 1 53.4 ? C5A NAP 1901 A 1 HETATM 17 C C6A NAP . . . C 3 120.678 208.451 189.579 1 76.48 ? C6A NAP 1901 A 1 HETATM 18 N N6A NAP . . . C 3 121.75 208.999 190.006 1 54.78 ? N6A NAP 1901 A 1 HETATM 19 N N1A NAP . . . C 3 120.615 208.012 188.381 1 63.31 ? N1A NAP 1901 A 1 HETATM 20 C C2A NAP . . . C 3 119.534 207.456 187.963 1 21.73 ? C2A NAP 1901 A 1 HETATM 21 N N3A NAP . . . C 3 118.488 207.27 188.709 1 58.93 ? N3A NAP 1901 A 1 HETATM 22 C C4A NAP . . . C 3 118.473 207.667 189.942 1 54.47 ? C4A NAP 1901 A 1 HETATM 23 O O3 NAP . . . C 3 110.271 209.59 193.965 1 117.67 ? O3 NAP 1901 A 1 HETATM 24 P PN NAP . . . C 3 109.797 210.745 193.068 1 119.37 ? PN NAP 1901 A 1 HETATM 25 O O1N NAP . . . C 3 108.388 210.932 192.973 1 90.13 ? O1N NAP 1901 A 1 HETATM 26 O O2N NAP . . . C 3 110.654 211.862 193.247 1 120.55 ? O2N NAP 1901 A 1 HETATM 27 O O5D NAP . . . C 3 110.279 210.191 191.763 1 109.32 ? O5D NAP 1901 A 1 HETATM 28 C C5D NAP . . . C 3 109.643 210.692 190.666 1 101.38 ? C5D NAP 1901 A 1 HETATM 29 C C4D NAP . . . C 3 109.82 212.16 190.499 1 127.15 ? C4D NAP 1901 A 1 HETATM 30 O O4D NAP . . . C 3 109.062 212.822 191.378 1 83.84 ? O4D NAP 1901 A 1 HETATM 31 C C3D NAP . . . C 3 111.134 212.747 190.752 1 137.58 ? C3D NAP 1901 A 1 HETATM 32 O O3D NAP . . . C 3 111.558 212.719 189.432 1 78.78 ? O3D NAP 1901 A 1 HETATM 33 C C2D NAP . . . C 3 110.834 214.119 191.243 1 75.28 ? C2D NAP 1901 A 1 HETATM 34 O O2D NAP . . . C 3 111.52 215.108 190.526 1 55.61 ? O2D NAP 1901 A 1 HETATM 35 C C1D NAP . . . C 3 109.362 214.15 191.057 1 89.49 ? C1D NAP 1901 A 1 HETATM 36 N N1N NAP . . . C 3 108.608 215.031 191.943 1 104.95 ? N1N NAP 1901 A 1 HETATM 37 C C2N NAP . . . C 3 108.031 214.566 193.01 1 121.21 ? C2N NAP 1901 A 1 HETATM 38 C C3N NAP . . . C 3 107.31 215.314 193.835 1 110.99 ? C3N NAP 1901 A 1 HETATM 39 C C7N NAP . . . C 3 106.746 214.679 194.973 1 85.53 ? C7N NAP 1901 A 1 HETATM 40 O O7N NAP . . . C 3 106.103 215.298 195.717 1 79.74 ? O7N NAP 1901 A 1 HETATM 41 N N7N NAP . . . C 3 106.947 213.424 195.111 1 60.88 ? N7N NAP 1901 A 1 HETATM 42 C C4N NAP . . . C 3 107.136 216.607 193.587 1 92.54 ? C4N NAP 1901 A 1 HETATM 43 C C5N NAP . . . C 3 107.711 217.12 192.471 1 79.98 ? C5N NAP 1901 A 1 HETATM 44 C C6N NAP . . . C 3 108.437 216.291 191.67 1 75.67 ? C6N NAP 1901 A 1 HETATM 45 P P2B NAP . . . C 3 115.939 203.584 191.86 1 105.37 ? P2B NAP 1901 A 1 HETATM 46 O O1X NAP . . . C 3 115.541 202.383 191.169 1 63.17 ? O1X NAP 1901 A 1 HETATM 47 O O2X NAP . . . C 3 115.21 203.812 193.084 1 66.91 ? O2X NAP 1901 A 1 HETATM 48 O O3X NAP . . . C 3 117.371 203.749 191.912 1 77.01 ? O3X NAP 1901 A 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 45 _model_server_stats.query_time_ms 265 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 48 #