data_6U5U # _model_server_result.job_id NpbDEfsV5JpNcppIUEAGbA _model_server_result.datetime_utc '2025-07-08 03:02:25' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6u5u # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":1902}' # _entry.id 6U5U # _exptl.entry_id 6U5U _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 358.348 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "4'-PHOSPHOPANTETHEINE" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? dodecameric 12 'complete point assembly' 1 ? dimeric 2 'point asymmetric unit' 2 ? dimeric 2 'point asymmetric unit, std point frame' 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F 1 (1-6) A,B,C,D,E,F 2 1 A,B,C,D,E,F 3 P # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] P 'transform to point frame' ? ? -0.866094 -0.499881 -0.00007 0.499881 -0.866094 0.000213 -0.000167 0.000149 1 254.86295 68.26689 -186.55144 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'point symmetry operation' ? ? -0.5 -0.866025 -0.000122 0.866025 -0.5 0.000368 -0.00038 0.000079 1 441.45178 118.1812 0.05616 3 'point symmetry operation' ? ? -0.5 0.866025 -0.00038 -0.866025 -0.5 0.000079 -0.000122 0.000368 1 118.37798 441.39905 -0.04596 4 'point symmetry operation' ? ? 0.500237 0.865888 0.000122 0.865888 -0.500237 0.00007 0.000122 0.00007 -1 -68.31302 118.30664 373.07386 5 'point symmetry operation' ? ? 0.499762 -0.866162 0.00038 -0.866162 -0.499763 -0.000219 0.00038 -0.000219 -1 254.84942 441.4359 373.07973 6 'point symmetry operation' ? ? -1 0.000274 0 0.000274 1 -0.000298 0 -0.000298 -1 373.10634 0.0044 373.16523 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id covale _struct_conn.details ? _struct_conn.id covale1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id OG _struct_conn.ptnr1_label_comp_id SER _struct_conn.ptnr1_label_seq_id 180 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id SER _struct_conn.ptnr1_auth_seq_id 180 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id D _struct_conn.ptnr2_label_atom_id P24 _struct_conn.ptnr2_label_comp_id PNS _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id PNS _struct_conn.ptnr2_auth_seq_id 1902 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 1.603 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C11 H23 N2 O7 P S' _chem_comp.formula_weight 358.348 _chem_comp.id PNS _chem_comp.mon_nstd_flag . _chem_comp.name "4'-PHOSPHOPANTETHEINE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O23 P24 PNS sing 392 n n O23 HOP1 PNS sing 393 n n P24 O25 PNS sing 394 n n P24 O26 PNS doub 395 n n P24 O27 PNS sing 396 n n O25 HOP2 PNS sing 397 n n O27 C28 PNS sing 398 n n C28 C29 PNS sing 399 n n C28 H282 PNS sing 400 n n C28 H281 PNS sing 401 n n C29 C30 PNS sing 402 n n C29 C31 PNS sing 403 n n C29 C32 PNS sing 404 n n C30 H303 PNS sing 405 n n C30 H302 PNS sing 406 n n C30 H301 PNS sing 407 n n C31 H313 PNS sing 408 n n C31 H312 PNS sing 409 n n C31 H311 PNS sing 410 n n C32 O33 PNS sing 411 n n C32 C34 PNS sing 412 n n C32 H32 PNS sing 413 n n O33 H33 PNS sing 414 n n C34 O35 PNS doub 415 n n C34 N36 PNS sing 416 n n N36 C37 PNS sing 417 n n N36 H36 PNS sing 418 n n C37 C38 PNS sing 419 n n C37 H372 PNS sing 420 n n C37 H371 PNS sing 421 n n C38 C39 PNS sing 422 n n C38 H382 PNS sing 423 n n C38 H381 PNS sing 424 n n C39 O40 PNS doub 425 n n C39 N41 PNS sing 426 n n N41 C42 PNS sing 427 n n N41 H41 PNS sing 428 n n C42 C43 PNS sing 429 n n C42 H422 PNS sing 430 n n C42 H421 PNS sing 431 n n C43 S44 PNS sing 432 n n C43 H431 PNS sing 433 n n C43 H432 PNS sing 434 n n S44 H44 PNS sing 435 n n # _atom_sites.entry_id 6U5U _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 NAP A 1 1901 1901 NAP NAP . D 4 PNS A 1 1902 180 PNS GVL . E 5 FMN G 1 2101 3051 FMN FMN . F 3 NAP G 1 2102 2102 NAP NAP . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O23 PNS . . . D 4 140.787 139.855 205.884 1 151.96 -1 O23 PNS 1902 A 1 HETATM 2 P P24 PNS . . . D 4 140.223 140.979 204.912 1 151.96 ? P24 PNS 1902 A 1 HETATM 3 O O26 PNS . . . D 4 138.854 141.354 205.213 1 151.96 ? O26 PNS 1902 A 1 HETATM 4 O O27 PNS . . . D 4 140.529 140.412 203.459 1 151.96 ? O27 PNS 1902 A 1 HETATM 5 C C28 PNS . . . D 4 140.238 141.274 202.37 1 151.96 ? C28 PNS 1902 A 1 # _model_server_stats.io_time_ms 16 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 49 _model_server_stats.query_time_ms 307 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 5 #