data_6U5U # _model_server_result.job_id mxZ4lvNj4f0dq8MqQP1atw _model_server_result.datetime_utc '2024-12-26 19:24:15' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6u5u # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":2101}' # _entry.id 6U5U # _exptl.entry_id 6U5U _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 456.344 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'FLAVIN MONONUCLEOTIDE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? dodecameric 12 'complete point assembly' 1 ? dimeric 2 'point asymmetric unit' 2 ? dimeric 2 'point asymmetric unit, std point frame' 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F 1 (1-6) A,B,C,D,E,F 2 1 A,B,C,D,E,F 3 P # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] P 'transform to point frame' ? ? -0.866094 -0.499881 -0.00007 0.499881 -0.866094 0.000213 -0.000167 0.000149 1 254.86295 68.26689 -186.55144 1 'point symmetry operation' ? ? 1 0 0 0 1 0 0 0 1 0 0 0 2 'point symmetry operation' ? ? -0.5 -0.866025 -0.000122 0.866025 -0.5 0.000368 -0.00038 0.000079 1 441.45178 118.1812 0.05616 3 'point symmetry operation' ? ? -0.5 0.866025 -0.00038 -0.866025 -0.5 0.000079 -0.000122 0.000368 1 118.37798 441.39905 -0.04596 4 'point symmetry operation' ? ? 0.500237 0.865888 0.000122 0.865888 -0.500237 0.00007 0.000122 0.00007 -1 -68.31302 118.30664 373.07386 5 'point symmetry operation' ? ? 0.499762 -0.866162 0.00038 -0.866162 -0.499763 -0.000219 0.00038 -0.000219 -1 254.84942 441.4359 373.07973 6 'point symmetry operation' ? ? -1 0.000274 0 0.000274 1 -0.000298 0 -0.000298 -1 373.10634 0.0044 373.16523 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id covale _struct_conn.details ? _struct_conn.id covale1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id OG _struct_conn.ptnr1_label_comp_id SER _struct_conn.ptnr1_label_seq_id 180 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id SER _struct_conn.ptnr1_auth_seq_id 180 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id D _struct_conn.ptnr2_label_atom_id P24 _struct_conn.ptnr2_label_comp_id PNS _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id PNS _struct_conn.ptnr2_auth_seq_id 1902 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 1.603 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C17 H21 N4 O9 P' _chem_comp.formula_weight 456.344 _chem_comp.id FMN _chem_comp.mon_nstd_flag . _chem_comp.name 'FLAVIN MONONUCLEOTIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'RIBOFLAVIN MONOPHOSPHATE' # _atom_sites.entry_id 6U5U _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 NAP A 1 1901 1901 NAP NAP . D 4 PNS A 1 1902 180 PNS GVL . E 5 FMN G 1 2101 3051 FMN FMN . F 3 NAP G 1 2102 2102 NAP NAP . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 FMN . . . E 5 121.007 161.132 266.023 1 126.28 ? N1 FMN 2101 G 1 HETATM 2 C C2 FMN . . . E 5 121.688 162.251 265.603 1 126.28 ? C2 FMN 2101 G 1 HETATM 3 O O2 FMN . . . E 5 122.798 162.505 266.057 1 126.28 ? O2 FMN 2101 G 1 HETATM 4 N N3 FMN . . . E 5 121.137 163.096 264.675 1 126.28 ? N3 FMN 2101 G 1 HETATM 5 C C4 FMN . . . E 5 119.898 162.817 264.163 1 126.28 ? C4 FMN 2101 G 1 HETATM 6 O O4 FMN . . . E 5 119.397 163.564 263.336 1 126.28 ? O4 FMN 2101 G 1 HETATM 7 C C4A FMN . . . E 5 119.211 161.699 264.576 1 126.28 ? C4A FMN 2101 G 1 HETATM 8 N N5 FMN . . . E 5 117.974 161.438 264.054 1 126.28 ? N5 FMN 2101 G 1 HETATM 9 C C5A FMN . . . E 5 117.285 160.329 264.465 1 126.28 ? C5A FMN 2101 G 1 HETATM 10 C C6 FMN . . . E 5 116.037 160.064 263.941 1 126.28 ? C6 FMN 2101 G 1 HETATM 11 C C7 FMN . . . E 5 115.342 158.947 264.357 1 126.28 ? C7 FMN 2101 G 1 HETATM 12 C C7M FMN . . . E 5 113.988 158.654 263.796 1 126.28 ? C7M FMN 2101 G 1 HETATM 13 C C8 FMN . . . E 5 115.895 158.096 265.29 1 126.28 ? C8 FMN 2101 G 1 HETATM 14 C C8M FMN . . . E 5 115.142 156.883 265.734 1 126.28 ? C8M FMN 2101 G 1 HETATM 15 C C9 FMN . . . E 5 117.144 158.364 265.813 1 126.28 ? C9 FMN 2101 G 1 HETATM 16 C C9A FMN . . . E 5 117.837 159.483 265.397 1 126.28 ? C9A FMN 2101 G 1 HETATM 17 N N10 FMN . . . E 5 119.073 159.747 265.919 1 126.28 ? N10 FMN 2101 G 1 HETATM 18 C C10 FMN . . . E 5 119.767 160.854 265.507 1 126.28 ? C10 FMN 2101 G 1 HETATM 19 C C1' FMN . . . E 5 119.652 158.805 266.925 1 126.28 ? C1' FMN 2101 G 1 HETATM 20 C C2' FMN . . . E 5 119.414 159.349 268.317 1 126.28 ? C2' FMN 2101 G 1 HETATM 21 O O2' FMN . . . E 5 120.256 160.458 268.468 1 126.28 ? O2' FMN 2101 G 1 HETATM 22 C C3' FMN . . . E 5 119.772 158.326 269.374 1 126.28 ? C3' FMN 2101 G 1 HETATM 23 O O3' FMN . . . E 5 121.122 157.975 269.24 1 126.28 ? O3' FMN 2101 G 1 HETATM 24 C C4' FMN . . . E 5 118.923 157.088 269.196 1 126.28 ? C4' FMN 2101 G 1 HETATM 25 O O4' FMN . . . E 5 117.574 157.469 269.16 1 126.28 ? O4' FMN 2101 G 1 HETATM 26 C C5' FMN . . . E 5 119.101 156.134 270.353 1 126.28 ? C5' FMN 2101 G 1 HETATM 27 O O5' FMN . . . E 5 118.521 154.92 269.966 1 126.28 ? O5' FMN 2101 G 1 HETATM 28 P P FMN . . . E 5 117.153 154.451 270.645 1 126.28 ? P FMN 2101 G 1 HETATM 29 O O1P FMN . . . E 5 116.034 155.177 269.951 1 126.28 ? O1P FMN 2101 G 1 HETATM 30 O O2P FMN . . . E 5 116.992 152.961 270.505 1 126.28 -1 O2P FMN 2101 G 1 HETATM 31 O O3P FMN . . . E 5 117.164 154.818 272.101 1 126.28 ? O3P FMN 2101 G 1 # _model_server_stats.io_time_ms 69 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 39 _model_server_stats.query_time_ms 378 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 31 #