data_6U5U # _model_server_result.job_id inj110DGJ_ov7ABsEQsD7g _model_server_result.datetime_utc '2024-12-26 19:44:38' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6u5u # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":2102}' # _entry.id 6U5U # _exptl.entry_id 6U5U _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 743.405 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? dodecameric 12 'complete point assembly' 1 ? dimeric 2 'point asymmetric unit' 2 ? dimeric 2 'point asymmetric unit, std point frame' 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F 1 (1-6) A,B,C,D,E,F 2 1 A,B,C,D,E,F 3 P # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] P 'transform to point frame' ? ? -0.866094 -0.499881 -0.00007 0.499881 -0.866094 0.000213 -0.000167 0.000149 1 254.86295 68.26689 -186.55144 1 'point symmetry operation' ? ? 1 0 0 0 1 0 0 0 1 0 0 0 2 'point symmetry operation' ? ? -0.5 -0.866025 -0.000122 0.866025 -0.5 0.000368 -0.00038 0.000079 1 441.45178 118.1812 0.05616 3 'point symmetry operation' ? ? -0.5 0.866025 -0.00038 -0.866025 -0.5 0.000079 -0.000122 0.000368 1 118.37798 441.39905 -0.04596 4 'point symmetry operation' ? ? 0.500237 0.865888 0.000122 0.865888 -0.500237 0.00007 0.000122 0.00007 -1 -68.31302 118.30664 373.07386 5 'point symmetry operation' ? ? 0.499762 -0.866162 0.00038 -0.866162 -0.499763 -0.000219 0.00038 -0.000219 -1 254.84942 441.4359 373.07973 6 'point symmetry operation' ? ? -1 0.000274 0 0.000274 1 -0.000298 0 -0.000298 -1 373.10634 0.0044 373.16523 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 F N N # _struct_conn.conn_type_id covale _struct_conn.details ? _struct_conn.id covale1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id OG _struct_conn.ptnr1_label_comp_id SER _struct_conn.ptnr1_label_seq_id 180 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id SER _struct_conn.ptnr1_auth_seq_id 180 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id D _struct_conn.ptnr2_label_atom_id P24 _struct_conn.ptnr2_label_comp_id PNS _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id PNS _struct_conn.ptnr2_auth_seq_id 1902 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 1.603 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C21 H28 N7 O17 P3' _chem_comp.formula_weight 743.405 _chem_comp.id NAP _chem_comp.mon_nstd_flag . _chem_comp.name 'NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms "2'-MONOPHOSPHOADENOSINE 5'-DIPHOSPHORIBOSE" # _atom_sites.entry_id 6U5U _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 NAP A 1 1901 1901 NAP NAP . D 4 PNS A 1 1902 180 PNS GVL . E 5 FMN G 1 2101 3051 FMN FMN . F 3 NAP G 1 2102 2102 NAP NAP . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA NAP . . . F 3 119.207 164.177 251.954 1 118.53 ? PA NAP 2102 G 1 HETATM 2 O O1A NAP . . . F 3 118.394 163.072 251.323 1 76.62 ? O1A NAP 2102 G 1 HETATM 3 O O2A NAP . . . F 3 120.608 163.896 252.444 1 102.13 ? O2A NAP 2102 G 1 HETATM 4 O O5B NAP . . . F 3 119.275 165.407 250.917 1 55.2 ? O5B NAP 2102 G 1 HETATM 5 C C5B NAP . . . F 3 119.415 166.745 251.388 1 35.95 ? C5B NAP 2102 G 1 HETATM 6 C C4B NAP . . . F 3 119.913 167.632 250.254 1 54.55 ? C4B NAP 2102 G 1 HETATM 7 O O4B NAP . . . F 3 118.808 168.053 249.449 1 48.79 ? O4B NAP 2102 G 1 HETATM 8 C C3B NAP . . . F 3 120.602 168.877 250.791 1 57.89 ? C3B NAP 2102 G 1 HETATM 9 O O3B NAP . . . F 3 121.973 168.89 250.37 1 51.12 ? O3B NAP 2102 G 1 HETATM 10 C C2B NAP . . . F 3 119.808 170.063 250.258 1 80.09 ? C2B NAP 2102 G 1 HETATM 11 O O2B NAP . . . F 3 120.596 170.939 249.45 1 99.66 ? O2B NAP 2102 G 1 HETATM 12 C C1B NAP . . . F 3 118.677 169.476 249.427 1 87.22 ? C1B NAP 2102 G 1 HETATM 13 N N9A NAP . . . F 3 117.372 169.865 250.017 1 103.65 ? N9A NAP 2102 G 1 HETATM 14 C C8A NAP . . . F 3 116.642 169.119 250.867 1 79.16 ? C8A NAP 2102 G 1 HETATM 15 N N7A NAP . . . F 3 115.498 169.759 251.223 1 73.43 ? N7A NAP 2102 G 1 HETATM 16 C C5A NAP . . . F 3 115.487 170.946 250.59 1 71.83 ? C5A NAP 2102 G 1 HETATM 17 C C6A NAP . . . F 3 114.573 172.111 250.522 1 95.52 ? C6A NAP 2102 G 1 HETATM 18 N N6A NAP . . . F 3 113.413 172.132 251.221 1 91.61 ? N6A NAP 2102 G 1 HETATM 19 N N1A NAP . . . F 3 114.937 173.15 249.738 1 116.03 ? N1A NAP 2102 G 1 HETATM 20 C C2A NAP . . . F 3 116.087 173.141 249.039 1 102.24 ? C2A NAP 2102 G 1 HETATM 21 N N3A NAP . . . F 3 116.962 172.119 249.054 1 119.07 ? N3A NAP 2102 G 1 HETATM 22 C C4A NAP . . . F 3 116.724 171.011 249.796 1 94.63 ? C4A NAP 2102 G 1 HETATM 23 O O3 NAP . . . F 3 118.36 164.794 253.176 1 106.55 ? O3 NAP 2102 G 1 HETATM 24 P PN NAP . . . F 3 118.119 163.937 254.518 1 101.25 ? PN NAP 2102 G 1 HETATM 25 O O1N NAP . . . F 3 116.634 163.715 254.678 1 119.09 -1 O1N NAP 2102 G 1 HETATM 26 O O2N NAP . . . F 3 119.059 162.755 254.498 1 63.37 ? O2N NAP 2102 G 1 HETATM 27 O O5D NAP . . . F 3 118.604 164.946 255.675 1 80.74 ? O5D NAP 2102 G 1 HETATM 28 C C5D NAP . . . F 3 118.794 164.479 257.009 1 42.78 ? C5D NAP 2102 G 1 HETATM 29 C C4D NAP . . . F 3 120.284 164.428 257.319 1 84.53 ? C4D NAP 2102 G 1 HETATM 30 O O4D NAP . . . F 3 120.487 164.059 258.686 1 102.24 ? O4D NAP 2102 G 1 HETATM 31 C C3D NAP . . . F 3 120.995 163.401 256.451 1 120.61 ? C3D NAP 2102 G 1 HETATM 32 O O3D NAP . . . F 3 121.859 164.067 255.52 1 62.6 ? O3D NAP 2102 G 1 HETATM 33 C C2D NAP . . . F 3 121.75 162.488 257.409 1 111.1 ? C2D NAP 2102 G 1 HETATM 34 O O2D NAP . . . F 3 123.168 162.514 257.198 1 88.7 ? O2D NAP 2102 G 1 HETATM 35 C C1D NAP . . . F 3 121.431 162.991 258.809 1 95.48 ? C1D NAP 2102 G 1 HETATM 36 N N1N NAP . . . F 3 120.857 161.905 259.606 1 95.43 ? N1N NAP 2102 G 1 HETATM 37 C C2N NAP . . . F 3 121.588 161.348 260.58 1 82.87 ? C2N NAP 2102 G 1 HETATM 38 C C3N NAP . . . F 3 121.07 160.315 261.353 1 91.88 ? C3N NAP 2102 G 1 HETATM 39 C C7N NAP . . . F 3 121.899 159.699 262.441 1 84.84 ? C7N NAP 2102 G 1 HETATM 40 O O7N NAP . . . F 3 121.466 158.733 263.048 1 96.88 ? O7N NAP 2102 G 1 HETATM 41 N N7N NAP . . . F 3 123.091 160.226 262.718 1 108.12 ? N7N NAP 2102 G 1 HETATM 42 C C4N NAP . . . F 3 119.782 159.859 261.11 1 94.09 ? C4N NAP 2102 G 1 HETATM 43 C C5N NAP . . . F 3 119.045 160.453 260.095 1 98.53 ? C5N NAP 2102 G 1 HETATM 44 C C6N NAP . . . F 3 119.612 161.482 259.352 1 58.3 ? C6N NAP 2102 G 1 HETATM 45 P P2B NAP . . . F 3 121.404 172.159 250.121 1 114.55 ? P2B NAP 2102 G 1 HETATM 46 O O1X NAP . . . F 3 121.027 173.353 249.277 1 75.09 ? O1X NAP 2102 G 1 HETATM 47 O O2X NAP . . . F 3 122.851 171.745 250.005 1 84.45 -1 O2X NAP 2102 G 1 HETATM 48 O O3X NAP . . . F 3 120.88 172.206 251.536 1 61.77 ? O3X NAP 2102 G 1 # _model_server_stats.io_time_ms 33 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 50 _model_server_stats.query_time_ms 461 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 48 #