data_6U5W
#
_model_server_result.job_id            6SFQe3J1HoRwm6tuoTPPTg 
_model_server_result.datetime_utc      '2024-10-19 10:31:08' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6u5w 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":1901}' 
#
_entry.id    6U5W 
#
_exptl.entry_id    6U5W 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              743.405 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? dodecameric 12 'complete point assembly' 1 
? dimeric 2 'point asymmetric unit' 2 
? dimeric 2 'point asymmetric unit, std point frame' 3 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,C,D,E 1 (1-6) 
A,B,C,D,E 2 1 
A,B,C,D,E 3 P 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
P 'transform to point frame' ? ? -0.000177 -1 0.000195 1 -0.000177 0.000165 -0.000165 0.000195 1 186.54977 -186.57965 -186.56394 
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'point symmetry operation' ? ? -0.5 -0.866025 -0.000079 0.866025 -0.5 0.000436 -0.000417 0.00015 1 441.44718 118.16401 0.0499 
3 'point symmetry operation' ? ? -0.5 0.866025 -0.000417 -0.866025 -0.5 0.00015 -0.000079 0.000436 1 118.39057 441.38647 -0.06666 
4 'point symmetry operation' ? ? -1 0.000353 0 0.000353 1 -0.000391 0 -0.000391 -1 373.0976 0.00702 373.18957 
5 'point symmetry operation' ? ? 0.500306 0.865849 0.000079 0.865849 -0.500306 0.000046 0.000079 0.000046 -1 -68.30783 118.32688 373.09348 
6 'point symmetry operation' ? ? 0.499694 -0.866202 0.000417 -0.866202 -0.499694 -0.000241 0.000417 -0.000241 -1 254.8629 441.43526 373.08379 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 C N N 
? 3 E N N 
#
_chem_comp.formula           'C21 H28 N7 O17 P3' 
_chem_comp.formula_weight    743.405 
_chem_comp.id                NAP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     "2'-MONOPHOSPHOADENOSINE 5'-DIPHOSPHORIBOSE" 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PA O1A NAP doub 289 n n 
PA O2A NAP sing 290 n n 
PA O5B NAP sing 291 n n 
PA O3 NAP sing 292 n n 
O2A HOA2 NAP sing 293 n n 
O5B C5B NAP sing 294 n n 
C5B C4B NAP sing 295 n n 
C5B H51A NAP sing 296 n n 
C5B H52A NAP sing 297 n n 
C4B O4B NAP sing 298 n n 
C4B C3B NAP sing 299 n n 
C4B H4B NAP sing 300 n n 
O4B C1B NAP sing 301 n n 
C3B O3B NAP sing 302 n n 
C3B C2B NAP sing 303 n n 
C3B H3B NAP sing 304 n n 
O3B HO3A NAP sing 305 n n 
C2B O2B NAP sing 306 n n 
C2B C1B NAP sing 307 n n 
C2B H2B NAP sing 308 n n 
O2B P2B NAP sing 309 n n 
C1B N9A NAP sing 310 n n 
C1B H1B NAP sing 311 n n 
N9A C8A NAP sing 312 n y 
N9A C4A NAP sing 313 n y 
C8A N7A NAP doub 314 n y 
C8A H8A NAP sing 315 n n 
N7A C5A NAP sing 316 n y 
C5A C6A NAP sing 317 n y 
C5A C4A NAP doub 318 n y 
C6A N6A NAP sing 319 n n 
C6A N1A NAP doub 320 n y 
N6A H61A NAP sing 321 n n 
N6A H62A NAP sing 322 n n 
N1A C2A NAP sing 323 n y 
C2A N3A NAP doub 324 n y 
C2A H2A NAP sing 325 n n 
N3A C4A NAP sing 326 n y 
O3 PN NAP sing 327 n n 
PN O1N NAP doub 328 n n 
PN O2N NAP sing 329 n n 
PN O5D NAP sing 330 n n 
O5D C5D NAP sing 331 n n 
C5D C4D NAP sing 332 n n 
C5D H51N NAP sing 333 n n 
C5D H52N NAP sing 334 n n 
C4D O4D NAP sing 335 n n 
C4D C3D NAP sing 336 n n 
C4D H4D NAP sing 337 n n 
O4D C1D NAP sing 338 n n 
C3D O3D NAP sing 339 n n 
C3D C2D NAP sing 340 n n 
C3D H3D NAP sing 341 n n 
O3D HO3N NAP sing 342 n n 
C2D O2D NAP sing 343 n n 
C2D C1D NAP sing 344 n n 
C2D H2D NAP sing 345 n n 
O2D HO2N NAP sing 346 n n 
C1D N1N NAP sing 347 n n 
C1D H1D NAP sing 348 n n 
N1N C2N NAP sing 349 n y 
N1N C6N NAP doub 350 n y 
C2N C3N NAP doub 351 n y 
C2N H2N NAP sing 352 n n 
C3N C7N NAP sing 353 n n 
C3N C4N NAP sing 354 n y 
C7N O7N NAP doub 355 n n 
C7N N7N NAP sing 356 n n 
N7N H71N NAP sing 357 n n 
N7N H72N NAP sing 358 n n 
C4N C5N NAP doub 359 n y 
C4N H4N NAP sing 360 n n 
C5N C6N NAP sing 361 n y 
C5N H5N NAP sing 362 n n 
C6N H6N NAP sing 363 n n 
P2B O1X NAP doub 364 n n 
P2B O2X NAP sing 365 n n 
P2B O3X NAP sing 366 n n 
O2X HOP2 NAP sing 367 n n 
O3X HOP3 NAP sing 368 n n 
#
_atom_sites.entry_id                     6U5W 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 3 NAP A 1 1901 1901 NAP NAP . 
D 4 FMN B 1 2101 3051 FMN FMN . 
E 3 NAP B 1 2102 2102 NAP NAP . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PA NAP . . . C 3 203.987 109.987 194.743 1 174.83 ? PA NAP 1901 A 1 
HETATM 2 O O1A NAP . . . C 3 204.18 110.636 196.093 1 72.91 -1 O1A NAP 1901 A 1 
HETATM 3 O O2A NAP . . . C 3 202.599 109.623 194.272 1 116.88 ? O2A NAP 1901 A 1 
HETATM 4 O O5B NAP . . . C 3 204.668 110.929 193.629 1 133.71 ? O5B NAP 1901 A 1 
HETATM 5 C C5B NAP . . . C 3 204.051 112.151 193.229 1 108.52 ? C5B NAP 1901 A 1 
HETATM 6 C C4B NAP . . . C 3 204.862 112.775 192.1 1 70.18 ? C4B NAP 1901 A 1 
HETATM 7 O O4B NAP . . . C 3 203.986 113.331 191.115 1 68.8 ? O4B NAP 1901 A 1 
HETATM 8 C C3B NAP . . . C 3 205.755 113.896 192.61 1 89.19 ? C3B NAP 1901 A 1 
HETATM 9 O O3B NAP . . . C 3 207.128 113.483 192.561 1 60.98 ? O3B NAP 1901 A 1 
HETATM 10 C C2B NAP . . . C 3 205.467 115.1 191.724 1 85.36 ? C2B NAP 1901 A 1 
HETATM 11 O O2B NAP . . . C 3 206.611 115.53 190.986 1 108.76 ? O2B NAP 1901 A 1 
HETATM 12 C C1B NAP . . . C 3 204.375 114.661 190.76 1 92.07 ? C1B NAP 1901 A 1 
HETATM 13 N N9A NAP . . . C 3 203.212 115.577 190.868 1 74.6 ? N9A NAP 1901 A 1 
HETATM 14 C C8A NAP . . . C 3 202.5 115.819 191.984 1 86.99 ? C8A NAP 1901 A 1 
HETATM 15 N N7A NAP . . . C 3 201.501 116.707 191.745 1 69.92 ? N7A NAP 1901 A 1 
HETATM 16 C C5A NAP . . . C 3 201.567 117.049 190.445 1 53.4 ? C5A NAP 1901 A 1 
HETATM 17 C C6A NAP . . . C 3 200.812 117.943 189.536 1 76.48 ? C6A NAP 1901 A 1 
HETATM 18 N N6A NAP . . . C 3 199.758 118.668 189.982 1 54.78 ? N6A NAP 1901 A 1 
HETATM 19 N N1A NAP . . . C 3 201.211 118.011 188.246 1 63.31 ? N1A NAP 1901 A 1 
HETATM 20 C C2A NAP . . . C 3 202.256 117.296 187.79 1 21.73 ? C2A NAP 1901 A 1 
HETATM 21 N N3A NAP . . . C 3 202.985 116.467 188.558 1 58.93 ? N3A NAP 1901 A 1 
HETATM 22 C C4A NAP . . . C 3 202.696 116.302 189.872 1 54.47 ? C4A NAP 1901 A 1 
HETATM 23 O O3 NAP . . . C 3 204.903 108.663 194.686 1 117.67 ? O3 NAP 1901 A 1 
HETATM 24 P PN NAP . . . C 3 204.254 107.226 194.36 1 119.37 ? PN NAP 1901 A 1 
HETATM 25 O O1N NAP . . . C 3 205.376 106.229 194.198 1 90.13 ? O1N NAP 1901 A 1 
HETATM 26 O O2N NAP . . . C 3 203.154 106.966 195.36 1 120.55 ? O2N NAP 1901 A 1 
HETATM 27 O O5D NAP . . . C 3 203.577 107.459 192.917 1 109.32 ? O5D NAP 1901 A 1 
HETATM 28 C C5D NAP . . . C 3 203.995 106.691 191.789 1 101.38 ? C5D NAP 1901 A 1 
HETATM 29 C C4D NAP . . . C 3 202.829 106.434 190.837 1 127.15 ? C4D NAP 1901 A 1 
HETATM 30 O O4D NAP . . . C 3 202.498 105.042 190.845 1 83.84 ? O4D NAP 1901 A 1 
HETATM 31 C C3D NAP . . . C 3 201.578 107.214 191.215 1 137.58 ? C3D NAP 1901 A 1 
HETATM 32 O O3D NAP . . . C 3 201.272 108.165 190.186 1 78.78 ? O3D NAP 1901 A 1 
HETATM 33 C C2D NAP . . . C 3 200.476 106.18 191.409 1 75.28 ? C2D NAP 1901 A 1 
HETATM 34 O O2D NAP . . . C 3 199.354 106.395 190.543 1 55.61 ? O2D NAP 1901 A 1 
HETATM 35 C C1D NAP . . . C 3 201.108 104.829 191.106 1 89.49 ? C1D NAP 1901 A 1 
HETATM 36 N N1N NAP . . . C 3 200.952 103.938 192.258 1 104.95 ? N1N NAP 1901 A 1 
HETATM 37 C C2N NAP . . . C 3 201.914 103.887 193.188 1 121.21 ? C2N NAP 1901 A 1 
HETATM 38 C C3N NAP . . . C 3 201.79 103.049 194.29 1 110.99 ? C3N NAP 1901 A 1 
HETATM 39 C C7N NAP . . . C 3 202.874 102.999 195.326 1 85.53 ? C7N NAP 1901 A 1 
HETATM 40 O O7N NAP . . . C 3 202.783 102.206 196.249 1 79.74 ? O7N NAP 1901 A 1 
HETATM 41 N N7N NAP . . . C 3 203.912 103.826 195.211 1 60.88 ? N7N NAP 1901 A 1 
HETATM 42 C C4N NAP . . . C 3 200.657 102.259 194.426 1 92.54 ? C4N NAP 1901 A 1 
HETATM 43 C C5N NAP . . . C 3 199.675 102.331 193.449 1 79.98 ? C5N NAP 1901 A 1 
HETATM 44 C C6N NAP . . . C 3 199.849 103.186 192.366 1 75.67 ? C6N NAP 1901 A 1 
HETATM 45 P P2B NAP . . . C 3 207.326 116.933 191.325 1 105.37 ? P2B NAP 1901 A 1 
HETATM 46 O O1X NAP . . . C 3 208.505 116.977 190.382 1 63.17 -1 O1X NAP 1901 A 1 
HETATM 47 O O2X NAP . . . C 3 207.699 116.809 192.783 1 66.91 ? O2X NAP 1901 A 1 
HETATM 48 O O3X NAP . . . C 3 206.26 117.964 191.039 1 77.01 ? O3X NAP 1901 A 1 
#
_model_server_stats.io_time_ms              15 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    182 
_model_server_stats.query_time_ms           487 
_model_server_stats.encode_time_ms          6 
_model_server_stats.element_count           48 
#