data_6U5W
#
_model_server_result.job_id            h8kHhSjLwbVnOuGdRfg8Ew 
_model_server_result.datetime_utc      '2024-10-19 10:24:22' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6u5w 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":2101}' 
#
_entry.id    6U5W 
#
_exptl.entry_id    6U5W 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              456.344 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'FLAVIN MONONUCLEOTIDE' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? dodecameric 12 'complete point assembly' 1 
? dimeric 2 'point asymmetric unit' 2 
? dimeric 2 'point asymmetric unit, std point frame' 3 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,C,D,E 1 (1-6) 
A,B,C,D,E 2 1 
A,B,C,D,E 3 P 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
P 'transform to point frame' ? ? -0.000177 -1 0.000195 1 -0.000177 0.000165 -0.000165 0.000195 1 186.54977 -186.57965 -186.56394 
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'point symmetry operation' ? ? -0.5 -0.866025 -0.000079 0.866025 -0.5 0.000436 -0.000417 0.00015 1 441.44718 118.16401 0.0499 
3 'point symmetry operation' ? ? -0.5 0.866025 -0.000417 -0.866025 -0.5 0.00015 -0.000079 0.000436 1 118.39057 441.38647 -0.06666 
4 'point symmetry operation' ? ? -1 0.000353 0 0.000353 1 -0.000391 0 -0.000391 -1 373.0976 0.00702 373.18957 
5 'point symmetry operation' ? ? 0.500306 0.865849 0.000079 0.865849 -0.500306 0.000046 0.000079 0.000046 -1 -68.30783 118.32688 373.09348 
6 'point symmetry operation' ? ? 0.499694 -0.866202 0.000417 -0.866202 -0.499694 -0.000241 0.000417 -0.000241 -1 254.8629 441.43526 373.08379 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      4 
_struct_asym.id                             D 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C17 H21 N4 O9 P' 
_chem_comp.formula_weight    456.344 
_chem_comp.id                FMN 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'FLAVIN MONONUCLEOTIDE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'RIBOFLAVIN MONOPHOSPHATE' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N1 C2 FMN sing 83 n n 
N1 C10 FMN doub 84 n n 
C2 O2 FMN doub 85 n n 
C2 N3 FMN sing 86 n n 
N3 C4 FMN sing 87 n n 
N3 HN3 FMN sing 88 n n 
C4 O4 FMN doub 89 n n 
C4 C4A FMN sing 90 n n 
C4A N5 FMN doub 91 n n 
C4A C10 FMN sing 92 n n 
N5 C5A FMN sing 93 n n 
C5A C6 FMN doub 94 n y 
C5A C9A FMN sing 95 n y 
C6 C7 FMN sing 96 n y 
C6 H6 FMN sing 97 n n 
C7 C7M FMN sing 98 n n 
C7 C8 FMN doub 99 n y 
C7M HM71 FMN sing 100 n n 
C7M HM72 FMN sing 101 n n 
C7M HM73 FMN sing 102 n n 
C8 C8M FMN sing 103 n n 
C8 C9 FMN sing 104 n y 
C8M HM81 FMN sing 105 n n 
C8M HM82 FMN sing 106 n n 
C8M HM83 FMN sing 107 n n 
C9 C9A FMN doub 108 n y 
C9 H9 FMN sing 109 n n 
C9A N10 FMN sing 110 n n 
N10 C10 FMN sing 111 n n 
N10 C1' FMN sing 112 n n 
C1' C2' FMN sing 113 n n 
C1' "H1'1" FMN sing 114 n n 
C1' "H1'2" FMN sing 115 n n 
C2' O2' FMN sing 116 n n 
C2' C3' FMN sing 117 n n 
C2' H2' FMN sing 118 n n 
O2' HO2' FMN sing 119 n n 
C3' O3' FMN sing 120 n n 
C3' C4' FMN sing 121 n n 
C3' H3' FMN sing 122 n n 
O3' HO3' FMN sing 123 n n 
C4' O4' FMN sing 124 n n 
C4' C5' FMN sing 125 n n 
C4' H4' FMN sing 126 n n 
O4' HO4' FMN sing 127 n n 
C5' O5' FMN sing 128 n n 
C5' "H5'1" FMN sing 129 n n 
C5' "H5'2" FMN sing 130 n n 
O5' P FMN sing 131 n n 
P O1P FMN doub 132 n n 
P O2P FMN sing 133 n n 
P O3P FMN sing 134 n n 
O2P HOP2 FMN sing 135 n n 
O3P HOP3 FMN sing 136 n n 
#
_atom_sites.entry_id                     6U5W 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 3 NAP A 1 1901 1901 NAP NAP . 
D 4 FMN B 1 2101 3051 FMN FMN . 
E 3 NAP B 1 2102 2102 NAP NAP . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N1 FMN . . . D 4 241.847 142.045 266.282 1 54.11 ? N1 FMN 2101 B 1 
HETATM 2 C C2 FMN . . . D 4 240.449 141.946 265.666 1 45.11 ? C2 FMN 2101 B 1 
HETATM 3 O O2 FMN . . . D 4 239.545 142.994 265.89 1 100.57 ? O2 FMN 2101 B 1 
HETATM 4 N N3 FMN . . . D 4 240.06 140.742 264.823 1 59.69 ? N3 FMN 2101 B 1 
HETATM 5 C C4 FMN . . . D 4 241.025 139.623 264.571 1 62.89 ? C4 FMN 2101 B 1 
HETATM 6 O O4 FMN . . . D 4 240.64 138.502 263.788 1 38.07 ? O4 FMN 2101 B 1 
HETATM 7 C C4A FMN . . . D 4 242.423 139.725 265.183 1 31.91 ? C4A FMN 2101 B 1 
HETATM 8 N N5 FMN . . . D 4 243.442 138.633 264.97 1 55.3 ? N5 FMN 2101 B 1 
HETATM 9 C C5A FMN . . . D 4 244.811 138.744 265.596 1 55.45 ? C5A FMN 2101 B 1 
HETATM 10 C C6 FMN . . . D 4 245.866 137.585 265.371 1 62.11 ? C6 FMN 2101 B 1 
HETATM 11 C C7 FMN . . . D 4 247.294 137.704 266.028 1 67.46 ? C7 FMN 2101 B 1 
HETATM 12 C C7M FMN . . . D 4 248.32 136.573 265.801 1 60.07 ? C7M FMN 2101 B 1 
HETATM 13 C C8 FMN . . . D 4 247.668 138.963 266.898 1 56.29 ? C8 FMN 2101 B 1 
HETATM 14 C C8M FMN . . . D 4 249.058 139.11 267.542 1 49.92 ? C8M FMN 2101 B 1 
HETATM 15 C C9 FMN . . . D 4 246.624 140.094 267.116 1 46.06 ? C9 FMN 2101 B 1 
HETATM 16 C C9A FMN . . . D 4 245.18 139.975 266.458 1 46.36 ? C9A FMN 2101 B 1 
HETATM 17 N N10 FMN . . . D 4 244.179 141.07 266.658 1 53.73 ? N10 FMN 2101 B 1 
HETATM 18 C C10 FMN . . . D 4 242.806 140.956 266.034 1 57.77 ? C10 FMN 2101 B 1 
HETATM 19 C C1' FMN . . . D 4 244.473 142.251 267.483 1 58.24 ? C1' FMN 2101 B 1 
HETATM 20 C C2' FMN . . . D 4 244.398 141.811 268.983 1 62.46 ? C2' FMN 2101 B 1 
HETATM 21 O O2' FMN . . . D 4 243.099 141.317 269.245 1 45.79 ? O2' FMN 2101 B 1 
HETATM 22 C C3' FMN . . . D 4 244.673 143.003 269.933 1 44.72 ? C3' FMN 2101 B 1 
HETATM 23 O O3' FMN . . . D 4 243.951 144.15 269.533 1 33.08 ? O3' FMN 2101 B 1 
HETATM 24 C C4' FMN . . . D 4 246.19 143.274 269.914 1 57.11 ? C4' FMN 2101 B 1 
HETATM 25 O O4' FMN . . . D 4 246.835 142.04 269.655 1 66.28 ? O4' FMN 2101 B 1 
HETATM 26 C C5' FMN . . . D 4 246.645 143.706 271.313 1 43.63 ? C5' FMN 2101 B 1 
HETATM 27 O O5' FMN . . . D 4 247.992 144.058 271.159 1 81.75 ? O5' FMN 2101 B 1 
HETATM 28 P P FMN . . . D 4 249.122 143.19 271.977 1 73.84 ? P FMN 2101 B 1 
HETATM 29 O O1P FMN . . . D 4 250.422 143.875 271.903 1 65.45 ? O1P FMN 2101 B 1 
HETATM 30 O O2P FMN . . . D 4 248.582 143.002 273.532 1 84.81 ? O2P FMN 2101 B 1 
HETATM 31 O O3P FMN . . . D 4 249.238 141.731 271.227 1 43.28 ? O3P FMN 2101 B 1 
#
_model_server_stats.io_time_ms              65 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    30 
_model_server_stats.query_time_ms           313 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           31 
#