data_6U5W
#
_model_server_result.job_id            '_ss8GcYHrudMI030CLB8LQ' 
_model_server_result.datetime_utc      '2024-10-19 10:35:24' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6u5w 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"E","auth_seq_id":2102}' 
#
_entry.id    6U5W 
#
_exptl.entry_id    6U5W 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              743.405 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? dodecameric 12 'complete point assembly' 1 
? dimeric 2 'point asymmetric unit' 2 
? dimeric 2 'point asymmetric unit, std point frame' 3 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,C,D,E 1 (1-6) 
A,B,C,D,E 2 1 
A,B,C,D,E 3 P 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
P 'transform to point frame' ? ? -0.000177 -1 0.000195 1 -0.000177 0.000165 -0.000165 0.000195 1 186.54977 -186.57965 -186.56394 
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'point symmetry operation' ? ? -0.5 -0.866025 -0.000079 0.866025 -0.5 0.000436 -0.000417 0.00015 1 441.44718 118.16401 0.0499 
3 'point symmetry operation' ? ? -0.5 0.866025 -0.000417 -0.866025 -0.5 0.00015 -0.000079 0.000436 1 118.39057 441.38647 -0.06666 
4 'point symmetry operation' ? ? -1 0.000353 0 0.000353 1 -0.000391 0 -0.000391 -1 373.0976 0.00702 373.18957 
5 'point symmetry operation' ? ? 0.500306 0.865849 0.000079 0.865849 -0.500306 0.000046 0.000079 0.000046 -1 -68.30783 118.32688 373.09348 
6 'point symmetry operation' ? ? 0.499694 -0.866202 0.000417 -0.866202 -0.499694 -0.000241 0.000417 -0.000241 -1 254.8629 441.43526 373.08379 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 C N N 
? 3 E N N 
#
_chem_comp.formula           'C21 H28 N7 O17 P3' 
_chem_comp.formula_weight    743.405 
_chem_comp.id                NAP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     "2'-MONOPHOSPHOADENOSINE 5'-DIPHOSPHORIBOSE" 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PA O1A NAP doub 289 n n 
PA O2A NAP sing 290 n n 
PA O5B NAP sing 291 n n 
PA O3 NAP sing 292 n n 
O2A HOA2 NAP sing 293 n n 
O5B C5B NAP sing 294 n n 
C5B C4B NAP sing 295 n n 
C5B H51A NAP sing 296 n n 
C5B H52A NAP sing 297 n n 
C4B O4B NAP sing 298 n n 
C4B C3B NAP sing 299 n n 
C4B H4B NAP sing 300 n n 
O4B C1B NAP sing 301 n n 
C3B O3B NAP sing 302 n n 
C3B C2B NAP sing 303 n n 
C3B H3B NAP sing 304 n n 
O3B HO3A NAP sing 305 n n 
C2B O2B NAP sing 306 n n 
C2B C1B NAP sing 307 n n 
C2B H2B NAP sing 308 n n 
O2B P2B NAP sing 309 n n 
C1B N9A NAP sing 310 n n 
C1B H1B NAP sing 311 n n 
N9A C8A NAP sing 312 n y 
N9A C4A NAP sing 313 n y 
C8A N7A NAP doub 314 n y 
C8A H8A NAP sing 315 n n 
N7A C5A NAP sing 316 n y 
C5A C6A NAP sing 317 n y 
C5A C4A NAP doub 318 n y 
C6A N6A NAP sing 319 n n 
C6A N1A NAP doub 320 n y 
N6A H61A NAP sing 321 n n 
N6A H62A NAP sing 322 n n 
N1A C2A NAP sing 323 n y 
C2A N3A NAP doub 324 n y 
C2A H2A NAP sing 325 n n 
N3A C4A NAP sing 326 n y 
O3 PN NAP sing 327 n n 
PN O1N NAP doub 328 n n 
PN O2N NAP sing 329 n n 
PN O5D NAP sing 330 n n 
O5D C5D NAP sing 331 n n 
C5D C4D NAP sing 332 n n 
C5D H51N NAP sing 333 n n 
C5D H52N NAP sing 334 n n 
C4D O4D NAP sing 335 n n 
C4D C3D NAP sing 336 n n 
C4D H4D NAP sing 337 n n 
O4D C1D NAP sing 338 n n 
C3D O3D NAP sing 339 n n 
C3D C2D NAP sing 340 n n 
C3D H3D NAP sing 341 n n 
O3D HO3N NAP sing 342 n n 
C2D O2D NAP sing 343 n n 
C2D C1D NAP sing 344 n n 
C2D H2D NAP sing 345 n n 
O2D HO2N NAP sing 346 n n 
C1D N1N NAP sing 347 n n 
C1D H1D NAP sing 348 n n 
N1N C2N NAP sing 349 n y 
N1N C6N NAP doub 350 n y 
C2N C3N NAP doub 351 n y 
C2N H2N NAP sing 352 n n 
C3N C7N NAP sing 353 n n 
C3N C4N NAP sing 354 n y 
C7N O7N NAP doub 355 n n 
C7N N7N NAP sing 356 n n 
N7N H71N NAP sing 357 n n 
N7N H72N NAP sing 358 n n 
C4N C5N NAP doub 359 n y 
C4N H4N NAP sing 360 n n 
C5N C6N NAP sing 361 n y 
C5N H5N NAP sing 362 n n 
C6N H6N NAP sing 363 n n 
P2B O1X NAP doub 364 n n 
P2B O2X NAP sing 365 n n 
P2B O3X NAP sing 366 n n 
O2X HOP2 NAP sing 367 n n 
O3X HOP3 NAP sing 368 n n 
#
_atom_sites.entry_id                     6U5W 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 3 NAP A 1 1901 1901 NAP NAP . 
D 4 FMN B 1 2101 3051 FMN FMN . 
E 3 NAP B 1 2102 2102 NAP NAP . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PA NAP . . . E 3 239.717 139.426 252.385 1 118.53 ? PA NAP 2102 B 1 
HETATM 2 O O1A NAP . . . E 3 241.109 139.255 251.825 1 76.62 -1 O1A NAP 2102 B 1 
HETATM 3 O O2A NAP . . . E 3 239.195 140.809 252.695 1 102.13 ? O2A NAP 2102 B 1 
HETATM 4 O O5B NAP . . . E 3 238.68 138.71 251.383 1 55.2 ? O5B NAP 2102 B 1 
HETATM 5 C C5B NAP . . . E 3 237.424 138.233 251.861 1 35.95 ? C5B NAP 2102 B 1 
HETATM 6 C C4B NAP . . . E 3 236.436 138.155 250.704 1 54.55 ? C4B NAP 2102 B 1 
HETATM 7 O O4B NAP . . . E 3 236.661 136.958 249.955 1 48.79 ? O4B NAP 2102 B 1 
HETATM 8 C C3B NAP . . . E 3 235 138.13 251.206 1 57.89 ? C3B NAP 2102 B 1 
HETATM 9 O O3B NAP . . . E 3 234.308 139.302 250.756 1 51.12 ? O3B NAP 2102 B 1 
HETATM 10 C C2B NAP . . . E 3 234.388 136.841 250.674 1 80.09 ? C2B NAP 2102 B 1 
HETATM 11 O O2B NAP . . . E 3 233.253 137.07 249.838 1 99.66 ? O2B NAP 2102 B 1 
HETATM 12 C C1B NAP . . . E 3 235.483 136.152 249.874 1 87.22 ? C1B NAP 2102 B 1 
HETATM 13 N N9A NAP . . . E 3 235.752 134.809 250.446 1 103.65 ? N9A NAP 2102 B 1 
HETATM 14 C C8A NAP . . . E 3 236.737 134.504 251.312 1 79.16 ? C8A NAP 2102 B 1 
HETATM 15 N N7A NAP . . . E 3 236.71 133.187 251.641 1 73.43 ? N7A NAP 2102 B 1 
HETATM 16 C C5A NAP . . . E 3 235.686 132.625 250.974 1 71.83 ? C5A NAP 2102 B 1 
HETATM 17 C C6A NAP . . . E 3 235.098 131.269 250.866 1 95.52 ? C6A NAP 2102 B 1 
HETATM 18 N N6A NAP . . . E 3 235.614 130.223 251.556 1 91.61 ? N6A NAP 2102 B 1 
HETATM 19 N N1A NAP . . . E 3 234.028 131.11 250.055 1 116.03 ? N1A NAP 2102 B 1 
HETATM 20 C C2A NAP . . . E 3 233.505 132.14 249.364 1 102.24 ? C2A NAP 2102 B 1 
HETATM 21 N N3A NAP . . . E 3 233.988 133.395 249.415 1 119.07 ? N3A NAP 2102 B 1 
HETATM 22 C C4A NAP . . . E 3 235.058 133.697 250.188 1 94.63 ? C4A NAP 2102 B 1 
HETATM 23 O O3 NAP . . . E 3 239.595 138.531 253.717 1 106.55 ? O3 NAP 2102 B 1 
HETATM 24 P PN NAP . . . E 3 240.562 138.8 254.976 1 101.25 ? PN NAP 2102 B 1 
HETATM 25 O O1N NAP . . . E 3 241.411 137.569 255.189 1 119.09 -1 O1N NAP 2102 B 1 
HETATM 26 O O2N NAP . . . E 3 241.22 140.146 254.787 1 63.37 ? O2N NAP 2102 B 1 
HETATM 27 O O5D NAP . . . E 3 239.524 138.913 256.201 1 80.74 ? O5D NAP 2102 B 1 
HETATM 28 C C5D NAP . . . E 3 239.954 139.392 257.473 1 42.78 ? C5D NAP 2102 B 1 
HETATM 29 C C4D NAP . . . E 3 239.294 140.736 257.756 1 84.53 ? C4D NAP 2102 B 1 
HETATM 30 O O4D NAP . . . E 3 239.481 141.093 259.129 1 102.24 ? O4D NAP 2102 B 1 
HETATM 31 C C3D NAP . . . E 3 239.9 141.84 256.903 1 120.61 ? C3D NAP 2102 B 1 
HETATM 32 O O3D NAP . . . E 3 238.937 142.295 255.944 1 62.6 ? O3D NAP 2102 B 1 
HETATM 33 C C2D NAP . . . E 3 240.331 142.934 257.872 1 111.1 ? C2D NAP 2102 B 1 
HETATM 34 O O2D NAP . . . E 3 239.66 144.179 257.638 1 88.7 ? O2D NAP 2102 B 1 
HETATM 35 C C1D NAP . . . E 3 239.99 142.423 259.263 1 95.48 ? C1D NAP 2102 B 1 
HETATM 36 N N1N NAP . . . E 3 241.194 142.415 260.098 1 95.43 ? N1N NAP 2102 B 1 
HETATM 37 C C2N NAP . . . E 3 241.292 143.276 261.119 1 82.87 ? C2N NAP 2102 B 1 
HETATM 38 C C3N NAP . . . E 3 242.423 143.292 261.927 1 91.88 ? C3N NAP 2102 B 1 
HETATM 39 C C7N NAP . . . E 3 242.52 144.262 263.068 1 84.84 ? C7N NAP 2102 B 1 
HETATM 40 O O7N NAP . . . E 3 243.555 144.327 263.71 1 96.88 ? O7N NAP 2102 B 1 
HETATM 41 N N7N NAP . . . E 3 241.468 145.029 263.35 1 108.12 ? N7N NAP 2102 B 1 
HETATM 42 C C4N NAP . . . E 3 243.459 142.406 261.671 1 94.09 ? C4N NAP 2102 B 1 
HETATM 43 C C5N NAP . . . E 3 243.334 141.524 260.606 1 98.53 ? C5N NAP 2102 B 1 
HETATM 44 C C6N NAP . . . E 3 242.181 141.551 259.83 1 58.3 ? C6N NAP 2102 B 1 
HETATM 45 P P2B NAP . . . E 3 231.774 137.135 250.47 1 114.55 ? P2B NAP 2102 B 1 
HETATM 46 O O1X NAP . . . E 3 230.969 136.187 249.614 1 75.09 ? O1X NAP 2102 B 1 
HETATM 47 O O2X NAP . . . E 3 231.381 138.586 250.333 1 84.45 -1 O2X NAP 2102 B 1 
HETATM 48 O O3X NAP . . . E 3 231.969 136.675 251.895 1 61.77 ? O3X NAP 2102 B 1 
#
_model_server_stats.io_time_ms              15 
_model_server_stats.parse_time_ms           7 
_model_server_stats.create_model_time_ms    52 
_model_server_stats.query_time_ms           301 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           48 
#