data_6U63
#
_model_server_result.job_id            hEQbG2aRG7jcjveTHtnTPg 
_model_server_result.datetime_utc      '2025-07-16 22:37:10' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6u63 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"G","auth_seq_id":401}' 
#
_entry.id    6U63 
#
_exptl.entry_id    6U63 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              463.569 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '2-{[(naphthalen-2-yl)sulfonyl]amino}-5-[(2-phenylethyl)sulfanyl]benzoic acid' 
_entity.pdbx_number_of_molecules    6 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            6U63 
_cell.length_a            68.98 
_cell.length_b            69.6 
_cell.length_c            110.34 
_cell.Z_PDB               16 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6U63 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA monomeric 1 author_and_software_defined_assembly 1 
PISA monomeric 1 author_and_software_defined_assembly 2 
PISA monomeric 1 author_and_software_defined_assembly 3 
PISA monomeric 1 author_and_software_defined_assembly 4 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,E,F,K 1 1 
B,G,H,L 2 1 
C,I,M 3 1 
D,J,N 4 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 E N N 
? 2 F N N 
? 2 G N N 
? 2 H N N 
? 2 I N N 
? 2 J N N 
#
_chem_comp.formula           'C25 H21 N O4 S2' 
_chem_comp.formula_weight    463.569 
_chem_comp.id                Q0D 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '2-{[(naphthalen-2-yl)sulfonyl]amino}-5-[(2-phenylethyl)sulfanyl]benzoic acid' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
O2 S1 Q0D doub 277 n n 
C19 C20 Q0D doub 278 n y 
C19 C18 Q0D sing 279 n y 
C20 C21 Q0D sing 280 n y 
C18 C17 Q0D doub 281 n y 
C18 C23 Q0D sing 282 n y 
C17 C16 Q0D sing 283 n y 
C21 C22 Q0D doub 284 n y 
C23 C22 Q0D sing 285 n y 
C23 C24 Q0D doub 286 n y 
C16 C15 Q0D doub 287 n y 
C15 C24 Q0D sing 288 n y 
C15 S1 Q0D sing 289 n n 
O3 S1 Q0D doub 290 n n 
S1 N Q0D sing 291 n n 
N C14 Q0D sing 292 n n 
C8 C9 Q0D doub 293 n y 
C8 C7 Q0D sing 294 n y 
O1 C Q0D doub 295 n n 
C14 C1 Q0D doub 296 n y 
C14 C13 Q0D sing 297 n y 
C9 C10 Q0D sing 298 n y 
C O Q0D sing 299 n n 
C C1 Q0D sing 300 n n 
C7 C6 Q0D doub 301 n y 
C1 C2 Q0D sing 302 n y 
C13 C12 Q0D doub 303 n y 
C10 C11 Q0D doub 304 n y 
C6 C11 Q0D sing 305 n y 
C6 C5 Q0D sing 306 n n 
C2 C3 Q0D doub 307 n y 
C12 C3 Q0D sing 308 n y 
C3 S Q0D sing 309 n n 
C5 C4 Q0D sing 310 n n 
C4 S Q0D sing 311 n n 
C2 H1 Q0D sing 312 n n 
C4 H2 Q0D sing 313 n n 
C4 H3 Q0D sing 314 n n 
C5 H4 Q0D sing 315 n n 
C5 H5 Q0D sing 316 n n 
C19 H6 Q0D sing 317 n n 
C24 H7 Q0D sing 318 n n 
C22 H8 Q0D sing 319 n n 
C21 H9 Q0D sing 320 n n 
C20 H10 Q0D sing 321 n n 
C17 H11 Q0D sing 322 n n 
C16 H12 Q0D sing 323 n n 
N H13 Q0D sing 324 n n 
O H14 Q0D sing 325 n n 
C13 H15 Q0D sing 326 n n 
C12 H16 Q0D sing 327 n n 
C11 H17 Q0D sing 328 n n 
C10 H18 Q0D sing 329 n n 
C9 H19 Q0D sing 330 n n 
C8 H20 Q0D sing 331 n n 
C7 H21 Q0D sing 332 n n 
#
_atom_sites.entry_id                     6U63 
_atom_sites.fract_transf_matrix[1][1]    0.014497 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.014368 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.009063 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 2 Q0D A 1 401 500 Q0D 382 . 
F 2 Q0D A 1 402 1 Q0D 382 . 
G 2 Q0D B 1 401 500 Q0D 382 . 
H 2 Q0D B 1 402 2 Q0D 382 . 
I 2 Q0D C 1 500 500 Q0D 382 . 
J 2 Q0D D 1 500 500 Q0D 382 . 
K 3 HOH A 1 501 11 HOH HOH . 
K 3 HOH A 2 502 9 HOH HOH . 
K 3 HOH A 3 503 1 HOH HOH . 
K 3 HOH A 4 504 17 HOH HOH . 
K 3 HOH A 5 505 8 HOH HOH . 
K 3 HOH A 6 506 10 HOH HOH . 
K 3 HOH A 7 507 22 HOH HOH . 
L 3 HOH B 1 501 2 HOH HOH . 
L 3 HOH B 2 502 20 HOH HOH . 
L 3 HOH B 3 503 15 HOH HOH . 
L 3 HOH B 4 504 13 HOH HOH . 
L 3 HOH B 5 505 21 HOH HOH . 
L 3 HOH B 6 506 5 HOH HOH . 
L 3 HOH B 7 507 14 HOH HOH . 
L 3 HOH B 8 508 12 HOH HOH . 
M 3 HOH C 1 601 18 HOH HOH . 
M 3 HOH C 2 602 3 HOH HOH . 
M 3 HOH C 3 603 6 HOH HOH . 
M 3 HOH C 4 604 7 HOH HOH . 
M 3 HOH C 5 605 24 HOH HOH . 
M 3 HOH C 6 606 16 HOH HOH . 
N 3 HOH D 1 601 19 HOH HOH . 
N 3 HOH D 2 602 4 HOH HOH . 
N 3 HOH D 3 603 23 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 Q0D . . . G 2 50.968 66.626 58.85 1 54.36 ? C1 Q0D 401 B 1 
HETATM 2 C C2 Q0D . . . G 2 50.537 66.933 57.554 1 54.56 ? C2 Q0D 401 B 1 
HETATM 3 C C4 Q0D . . . G 2 47.666 68.688 56.176 1 53.59 ? C4 Q0D 401 B 1 
HETATM 4 C C5 Q0D . . . G 2 46.219 68.255 56.372 1 53.96 ? C5 Q0D 401 B 1 
HETATM 5 C C6 Q0D . . . G 2 45.284 69.296 56.95 1 54.3 ? C6 Q0D 401 B 1 
HETATM 6 C C15 Q0D . . . G 2 49.109 66.901 62.952 1 48.76 ? C15 Q0D 401 B 1 
HETATM 7 C C19 Q0D . . . G 2 48.424 71.036 62.637 1 48.16 ? C19 Q0D 401 B 1 
HETATM 8 C C23 Q0D . . . G 2 47.644 68.735 62.392 1 48.71 ? C23 Q0D 401 B 1 
HETATM 9 C C24 Q0D . . . G 2 47.895 67.344 62.495 1 48.49 ? C24 Q0D 401 B 1 
HETATM 10 O O3 Q0D . . . G 2 50.538 64.776 63.332 1 48 ? O3 Q0D 401 B 1 
HETATM 11 S S1 Q0D . . . G 2 49.64 65.33 62.365 1 48.75 ? S1 Q0D 401 B 1 
HETATM 12 O O2 Q0D . . . G 2 48.486 64.584 61.965 1 48.21 ? O2 Q0D 401 B 1 
HETATM 13 C C22 Q0D . . . G 2 46.433 69.253 61.867 1 48.78 ? C22 Q0D 401 B 1 
HETATM 14 C C21 Q0D . . . G 2 46.251 70.6 61.73 1 48.27 ? C21 Q0D 401 B 1 
HETATM 15 C C20 Q0D . . . G 2 47.247 71.491 62.112 1 48.04 ? C20 Q0D 401 B 1 
HETATM 16 C C18 Q0D . . . G 2 48.657 69.646 62.796 1 48.66 ? C18 Q0D 401 B 1 
HETATM 17 C C17 Q0D . . . G 2 49.857 69.129 63.339 1 48.45 ? C17 Q0D 401 B 1 
HETATM 18 C C16 Q0D . . . G 2 50.061 67.785 63.444 1 48.55 ? C16 Q0D 401 B 1 
HETATM 19 N N Q0D . . . G 2 50.517 65.713 61.055 1 50.83 ? N Q0D 401 B 1 
HETATM 20 C C14 Q0D . . . G 2 50.093 65.956 59.721 1 52.47 ? C14 Q0D 401 B 1 
HETATM 21 C C Q0D . . . G 2 52.234 67.235 59.348 1 55.74 ? C Q0D 401 B 1 
HETATM 22 O O1 Q0D . . . G 2 52.997 66.424 60.024 1 55.92 ? O1 Q0D 401 B 1 
HETATM 23 O O Q0D . . . G 2 52.472 68.426 59.221 1 56.45 ? O Q0D 401 B 1 
HETATM 24 C C13 Q0D . . . G 2 48.853 65.523 59.252 1 52.38 ? C13 Q0D 401 B 1 
HETATM 25 C C12 Q0D . . . G 2 48.445 65.824 57.966 1 52.96 ? C12 Q0D 401 B 1 
HETATM 26 C C3 Q0D . . . G 2 49.261 66.575 57.134 1 53.91 ? C3 Q0D 401 B 1 
HETATM 27 S S Q0D . . . G 2 48.569 67.211 55.637 1 53.5 ? S Q0D 401 B 1 
HETATM 28 C C11 Q0D . . . G 2 45.73 70.226 57.884 1 54.71 ? C11 Q0D 401 B 1 
HETATM 29 C C10 Q0D . . . G 2 44.867 71.176 58.409 1 54.02 ? C10 Q0D 401 B 1 
HETATM 30 C C9 Q0D . . . G 2 43.543 71.207 58.013 1 53.44 ? C9 Q0D 401 B 1 
HETATM 31 C C8 Q0D . . . G 2 43.086 70.285 57.09 1 53.08 ? C8 Q0D 401 B 1 
HETATM 32 C C7 Q0D . . . G 2 43.95 69.338 56.563 1 53.77 ? C7 Q0D 401 B 1 
#
_model_server_stats.io_time_ms              26 
_model_server_stats.parse_time_ms           15 
_model_server_stats.create_model_time_ms    11 
_model_server_stats.query_time_ms           558 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           32 
#