data_6U65
#
_model_server_result.job_id            xrlRkWAYotqPSA7kPPFr9Q 
_model_server_result.datetime_utc      '2025-01-10 18:03:48' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6u65 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"G","auth_seq_id":403}' 
#
_entry.id    6U65 
#
_exptl.entry_id    6U65 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              62.068 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            1,2-ETHANEDIOL 
_entity.pdbx_number_of_molecules    7 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            6U65 
_cell.length_a            69.712 
_cell.length_b            85.223 
_cell.length_c            109.753 
_cell.Z_PDB               16 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6U65 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA monomeric 1 author_and_software_defined_assembly 1 
PISA monomeric 1 author_and_software_defined_assembly 2 
PISA monomeric 1 author_and_software_defined_assembly 3 
PISA monomeric 1 author_and_software_defined_assembly 4 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,E,F,G,H,I,V 1 1 
B,J,K,L,M,W 2 1 
C,N,O,P,Q,R,X 3 1 
D,S,T,U,Y 4 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 F N N 
? 3 G N N 
? 3 H N N 
? 3 I N N 
? 3 M N N 
? 3 R N N 
? 3 U N N 
#
_chem_comp.formula           'C2 H6 O2' 
_chem_comp.formula_weight    62.068 
_chem_comp.id                EDO 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              1,2-ETHANEDIOL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'ETHYLENE GLYCOL' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 EDO sing 89 n n 
C1 C2 EDO sing 90 n n 
C1 H11 EDO sing 91 n n 
C1 H12 EDO sing 92 n n 
O1 HO1 EDO sing 93 n n 
C2 O2 EDO sing 94 n n 
C2 H21 EDO sing 95 n n 
C2 H22 EDO sing 96 n n 
O2 HO2 EDO sing 97 n n 
#
_atom_sites.entry_id                     6U65 
_atom_sites.fract_transf_matrix[1][1]    0.014345 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.011734 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.009111 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 2 Q0A A 1 401 500 Q0A 462 . 
F 3 EDO A 1 402 1 EDO EDO . 
G 3 EDO A 1 403 3 EDO EDO . 
H 3 EDO A 1 404 6 EDO EDO . 
I 3 EDO A 1 405 7 EDO EDO . 
J 2 Q0A B 1 401 500 Q0A 462 . 
K 4 ACT B 1 402 3 ACT ACT . 
L 4 ACT B 1 403 5 ACT ACT . 
M 3 EDO B 1 404 2 EDO EDO . 
N 2 Q0A C 1 401 500 Q0A 462 . 
O 4 ACT C 1 402 2 ACT ACT . 
P 4 ACT C 1 403 6 ACT ACT . 
Q 5 PEG C 1 404 1 PEG PGE . 
R 3 EDO C 1 405 4 EDO EDO . 
S 2 Q0A D 1 401 500 Q0A 462 . 
T 4 ACT D 1 402 4 ACT ACT . 
U 3 EDO D 1 403 5 EDO EDO . 
V 6 HOH A 1 501 105 HOH HOH . 
V 6 HOH A 2 502 9 HOH HOH . 
V 6 HOH A 3 503 185 HOH HOH . 
V 6 HOH A 4 504 150 HOH HOH . 
V 6 HOH A 5 505 134 HOH HOH . 
V 6 HOH A 6 506 145 HOH HOH . 
V 6 HOH A 7 507 72 HOH HOH . 
V 6 HOH A 8 508 43 HOH HOH . 
V 6 HOH A 9 509 77 HOH HOH . 
V 6 HOH A 10 510 2 HOH HOH . 
V 6 HOH A 11 511 155 HOH HOH . 
V 6 HOH A 12 512 79 HOH HOH . 
V 6 HOH A 13 513 5 HOH HOH . 
V 6 HOH A 14 514 45 HOH HOH . 
V 6 HOH A 15 515 90 HOH HOH . 
V 6 HOH A 16 516 78 HOH HOH . 
V 6 HOH A 17 517 56 HOH HOH . 
V 6 HOH A 18 518 96 HOH HOH . 
V 6 HOH A 19 519 110 HOH HOH . 
V 6 HOH A 20 520 4 HOH HOH . 
V 6 HOH A 21 521 31 HOH HOH . 
V 6 HOH A 22 522 48 HOH HOH . 
V 6 HOH A 23 523 42 HOH HOH . 
V 6 HOH A 24 524 167 HOH HOH . 
V 6 HOH A 25 525 29 HOH HOH . 
V 6 HOH A 26 526 39 HOH HOH . 
V 6 HOH A 27 527 57 HOH HOH . 
V 6 HOH A 28 528 32 HOH HOH . 
V 6 HOH A 29 529 68 HOH HOH . 
V 6 HOH A 30 530 27 HOH HOH . 
V 6 HOH A 31 531 59 HOH HOH . 
V 6 HOH A 32 532 154 HOH HOH . 
V 6 HOH A 33 533 60 HOH HOH . 
V 6 HOH A 34 534 14 HOH HOH . 
V 6 HOH A 35 535 19 HOH HOH . 
V 6 HOH A 36 536 160 HOH HOH . 
V 6 HOH A 37 537 119 HOH HOH . 
V 6 HOH A 38 538 143 HOH HOH . 
V 6 HOH A 39 539 179 HOH HOH . 
V 6 HOH A 40 540 112 HOH HOH . 
V 6 HOH A 41 541 124 HOH HOH . 
V 6 HOH A 42 542 106 HOH HOH . 
V 6 HOH A 43 543 103 HOH HOH . 
V 6 HOH A 44 544 126 HOH HOH . 
V 6 HOH A 45 545 84 HOH HOH . 
V 6 HOH A 46 546 104 HOH HOH . 
V 6 HOH A 47 547 49 HOH HOH . 
V 6 HOH A 48 548 61 HOH HOH . 
V 6 HOH A 49 549 151 HOH HOH . 
V 6 HOH A 50 550 21 HOH HOH . 
V 6 HOH A 51 551 70 HOH HOH . 
V 6 HOH A 52 552 140 HOH HOH . 
W 6 HOH B 1 501 188 HOH HOH . 
W 6 HOH B 2 502 81 HOH HOH . 
W 6 HOH B 3 503 183 HOH HOH . 
W 6 HOH B 4 504 132 HOH HOH . 
W 6 HOH B 5 505 11 HOH HOH . 
W 6 HOH B 6 506 125 HOH HOH . 
W 6 HOH B 7 507 7 HOH HOH . 
W 6 HOH B 8 508 153 HOH HOH . 
W 6 HOH B 9 509 168 HOH HOH . 
W 6 HOH B 10 510 113 HOH HOH . 
W 6 HOH B 11 511 136 HOH HOH . 
W 6 HOH B 12 512 170 HOH HOH . 
W 6 HOH B 13 513 130 HOH HOH . 
W 6 HOH B 14 514 158 HOH HOH . 
W 6 HOH B 15 515 86 HOH HOH . 
W 6 HOH B 16 516 152 HOH HOH . 
W 6 HOH B 17 517 163 HOH HOH . 
W 6 HOH B 18 518 161 HOH HOH . 
W 6 HOH B 19 519 26 HOH HOH . 
W 6 HOH B 20 520 23 HOH HOH . 
W 6 HOH B 21 521 122 HOH HOH . 
W 6 HOH B 22 522 10 HOH HOH . 
W 6 HOH B 23 523 91 HOH HOH . 
W 6 HOH B 24 524 53 HOH HOH . 
W 6 HOH B 25 525 141 HOH HOH . 
W 6 HOH B 26 526 51 HOH HOH . 
W 6 HOH B 27 527 100 HOH HOH . 
W 6 HOH B 28 528 133 HOH HOH . 
W 6 HOH B 29 529 75 HOH HOH . 
W 6 HOH B 30 530 83 HOH HOH . 
W 6 HOH B 31 531 156 HOH HOH . 
W 6 HOH B 32 532 128 HOH HOH . 
W 6 HOH B 33 533 37 HOH HOH . 
W 6 HOH B 34 534 73 HOH HOH . 
W 6 HOH B 35 535 41 HOH HOH . 
W 6 HOH B 36 536 142 HOH HOH . 
W 6 HOH B 37 537 18 HOH HOH . 
W 6 HOH B 38 538 180 HOH HOH . 
W 6 HOH B 39 539 172 HOH HOH . 
W 6 HOH B 40 540 82 HOH HOH . 
W 6 HOH B 41 541 46 HOH HOH . 
W 6 HOH B 42 542 117 HOH HOH . 
W 6 HOH B 43 543 44 HOH HOH . 
W 6 HOH B 44 544 47 HOH HOH . 
W 6 HOH B 45 545 58 HOH HOH . 
W 6 HOH B 46 546 28 HOH HOH . 
W 6 HOH B 47 547 76 HOH HOH . 
W 6 HOH B 48 548 184 HOH HOH . 
W 6 HOH B 49 549 71 HOH HOH . 
W 6 HOH B 50 550 115 HOH HOH . 
W 6 HOH B 51 551 127 HOH HOH . 
W 6 HOH B 52 552 99 HOH HOH . 
W 6 HOH B 53 553 12 HOH HOH . 
W 6 HOH B 54 554 175 HOH HOH . 
W 6 HOH B 55 555 65 HOH HOH . 
W 6 HOH B 56 556 94 HOH HOH . 
W 6 HOH B 57 557 135 HOH HOH . 
W 6 HOH B 58 558 157 HOH HOH . 
W 6 HOH B 59 559 52 HOH HOH . 
W 6 HOH B 60 560 101 HOH HOH . 
W 6 HOH B 61 561 123 HOH HOH . 
W 6 HOH B 62 562 17 HOH HOH . 
W 6 HOH B 63 563 98 HOH HOH . 
W 6 HOH B 64 564 87 HOH HOH . 
W 6 HOH B 65 565 116 HOH HOH . 
W 6 HOH B 66 566 102 HOH HOH . 
W 6 HOH B 67 567 111 HOH HOH . 
W 6 HOH B 68 568 138 HOH HOH . 
W 6 HOH B 69 569 177 HOH HOH . 
W 6 HOH B 70 570 40 HOH HOH . 
X 6 HOH C 1 501 159 HOH HOH . 
X 6 HOH C 2 502 171 HOH HOH . 
X 6 HOH C 3 503 181 HOH HOH . 
X 6 HOH C 4 504 178 HOH HOH . 
X 6 HOH C 5 505 54 HOH HOH . 
X 6 HOH C 6 506 114 HOH HOH . 
X 6 HOH C 7 507 80 HOH HOH . 
X 6 HOH C 8 508 36 HOH HOH . 
X 6 HOH C 9 509 187 HOH HOH . 
X 6 HOH C 10 510 25 HOH HOH . 
X 6 HOH C 11 511 15 HOH HOH . 
X 6 HOH C 12 512 162 HOH HOH . 
X 6 HOH C 13 513 55 HOH HOH . 
X 6 HOH C 14 514 50 HOH HOH . 
X 6 HOH C 15 515 64 HOH HOH . 
X 6 HOH C 16 516 88 HOH HOH . 
X 6 HOH C 17 517 118 HOH HOH . 
X 6 HOH C 18 518 20 HOH HOH . 
X 6 HOH C 19 519 173 HOH HOH . 
X 6 HOH C 20 520 174 HOH HOH . 
X 6 HOH C 21 521 30 HOH HOH . 
X 6 HOH C 22 522 69 HOH HOH . 
X 6 HOH C 23 523 13 HOH HOH . 
X 6 HOH C 24 524 35 HOH HOH . 
X 6 HOH C 25 525 186 HOH HOH . 
X 6 HOH C 26 526 67 HOH HOH . 
X 6 HOH C 27 527 108 HOH HOH . 
X 6 HOH C 28 528 24 HOH HOH . 
X 6 HOH C 29 529 93 HOH HOH . 
X 6 HOH C 30 530 85 HOH HOH . 
X 6 HOH C 31 531 34 HOH HOH . 
X 6 HOH C 32 532 62 HOH HOH . 
X 6 HOH C 33 533 148 HOH HOH . 
X 6 HOH C 34 534 38 HOH HOH . 
X 6 HOH C 35 535 137 HOH HOH . 
X 6 HOH C 36 536 147 HOH HOH . 
X 6 HOH C 37 537 146 HOH HOH . 
Y 6 HOH D 1 501 164 HOH HOH . 
Y 6 HOH D 2 502 92 HOH HOH . 
Y 6 HOH D 3 503 1 HOH HOH . 
Y 6 HOH D 4 504 166 HOH HOH . 
Y 6 HOH D 5 505 22 HOH HOH . 
Y 6 HOH D 6 506 129 HOH HOH . 
Y 6 HOH D 7 507 16 HOH HOH . 
Y 6 HOH D 8 508 97 HOH HOH . 
Y 6 HOH D 9 509 176 HOH HOH . 
Y 6 HOH D 10 510 144 HOH HOH . 
Y 6 HOH D 11 511 169 HOH HOH . 
Y 6 HOH D 12 512 165 HOH HOH . 
Y 6 HOH D 13 513 8 HOH HOH . 
Y 6 HOH D 14 514 74 HOH HOH . 
Y 6 HOH D 15 515 6 HOH HOH . 
Y 6 HOH D 16 516 3 HOH HOH . 
Y 6 HOH D 17 517 182 HOH HOH . 
Y 6 HOH D 18 518 121 HOH HOH . 
Y 6 HOH D 19 519 149 HOH HOH . 
Y 6 HOH D 20 520 63 HOH HOH . 
Y 6 HOH D 21 521 66 HOH HOH . 
Y 6 HOH D 22 522 33 HOH HOH . 
Y 6 HOH D 23 523 109 HOH HOH . 
Y 6 HOH D 24 524 89 HOH HOH . 
Y 6 HOH D 25 525 120 HOH HOH . 
Y 6 HOH D 26 526 139 HOH HOH . 
Y 6 HOH D 27 527 131 HOH HOH . 
Y 6 HOH D 28 528 95 HOH HOH . 
Y 6 HOH D 29 529 107 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 EDO . . . G 3 3.338 -8.435 1.348 1 58 ? C1 EDO 403 A 1 
HETATM 2 O O1 EDO . . . G 3 3.586 -7.169 0.747 1 58.38 ? O1 EDO 403 A 1 
HETATM 3 C C2 EDO . . . G 3 4.681 -9.127 1.683 1 57.35 ? C2 EDO 403 A 1 
HETATM 4 O O2 EDO . . . G 3 5.704 -8.197 2.028 1 54.03 ? O2 EDO 403 A 1 
#
_model_server_stats.io_time_ms              14 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    5 
_model_server_stats.query_time_ms           234 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           4 
#