data_6U6V # _model_server_result.job_id kmTRihIST0aFGYQip6wDjQ _model_server_result.datetime_utc '2024-11-22 00:11:02' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6u6v # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":201}' # _entry.id 6U6V # _exptl.entry_id 6U6V _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 221.208 _entity.id 2 _entity.src_method man _entity.type non-polymer _entity.pdbx_description 2-acetamido-2-deoxy-beta-D-glucopyranose _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 97.69 _cell.angle_gamma 90 _cell.entry_id 6U6V _cell.length_a 28.821 _cell.length_b 55.833 _cell.length_c 42.271 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6U6V _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 12 A CYS 12 1_555 A SG CYS 146 A CYS 146 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? disulf ? disulf2 A SG CYS 22 A CYS 22 1_555 A SG CYS 114 A CYS 114 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.998 ? disulf ? disulf3 A SG CYS 51 A CYS 51 1_555 A SG CYS 113 A CYS 113 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.013 ? covale ? covale1 A ND2 ASN 17 A ASN 17 1_555 B C1 NAG . A NAG 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.45 ? # _chem_comp.formula 'C8 H15 N O6' _chem_comp.formula_weight 221.208 _chem_comp.id NAG _chem_comp.mon_nstd_flag . _chem_comp.name 2-acetamido-2-deoxy-beta-D-glucopyranose _chem_comp.type 'd-saccharide, beta linking' _chem_comp.pdbx_synonyms N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 NAG sing 237 n n C1 O1 NAG sing 238 n n C1 O5 NAG sing 239 n n C1 H1 NAG sing 240 n n C2 C3 NAG sing 241 n n C2 N2 NAG sing 242 n n C2 H2 NAG sing 243 n n C3 C4 NAG sing 244 n n C3 O3 NAG sing 245 n n C3 H3 NAG sing 246 n n C4 C5 NAG sing 247 n n C4 O4 NAG sing 248 n n C4 H4 NAG sing 249 n n C5 C6 NAG sing 250 n n C5 O5 NAG sing 251 n n C5 H5 NAG sing 252 n n C6 O6 NAG sing 253 n n C6 H61 NAG sing 254 n n C6 H62 NAG sing 255 n n C7 C8 NAG sing 256 n n C7 N2 NAG sing 257 n n C7 O7 NAG doub 258 n n C8 H81 NAG sing 259 n n C8 H82 NAG sing 260 n n C8 H83 NAG sing 261 n n N2 HN2 NAG sing 262 n n O1 HO1 NAG sing 263 n n O3 HO3 NAG sing 264 n n O4 HO4 NAG sing 265 n n O6 HO6 NAG sing 266 n n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 6U6V _atom_sites.fract_transf_matrix[1][1] 0.034697 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.004684 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.017911 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.023872 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NAG A 1 201 17 NAG NAG . C 3 HOH A 1 301 36 HOH HOH . C 3 HOH A 2 302 52 HOH HOH . C 3 HOH A 3 303 31 HOH HOH . C 3 HOH A 4 304 5 HOH HOH . C 3 HOH A 5 305 10 HOH HOH . C 3 HOH A 6 306 70 HOH HOH . C 3 HOH A 7 307 30 HOH HOH . C 3 HOH A 8 308 9 HOH HOH . C 3 HOH A 9 309 69 HOH HOH . C 3 HOH A 10 310 72 HOH HOH . C 3 HOH A 11 311 3 HOH HOH . C 3 HOH A 12 312 21 HOH HOH . C 3 HOH A 13 313 25 HOH HOH . C 3 HOH A 14 314 6 HOH HOH . C 3 HOH A 15 315 12 HOH HOH . C 3 HOH A 16 316 1 HOH HOH . C 3 HOH A 17 317 71 HOH HOH . C 3 HOH A 18 318 32 HOH HOH . C 3 HOH A 19 319 17 HOH HOH . C 3 HOH A 20 320 29 HOH HOH . C 3 HOH A 21 321 4 HOH HOH . C 3 HOH A 22 322 13 HOH HOH . C 3 HOH A 23 323 20 HOH HOH . C 3 HOH A 24 324 26 HOH HOH . C 3 HOH A 25 325 22 HOH HOH . C 3 HOH A 26 326 67 HOH HOH . C 3 HOH A 27 327 65 HOH HOH . C 3 HOH A 28 328 2 HOH HOH . C 3 HOH A 29 329 15 HOH HOH . C 3 HOH A 30 330 73 HOH HOH . C 3 HOH A 31 331 33 HOH HOH . C 3 HOH A 32 332 11 HOH HOH . C 3 HOH A 33 333 55 HOH HOH . C 3 HOH A 34 334 24 HOH HOH . C 3 HOH A 35 335 66 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 NAG . . . B 2 -13.845 1.918 43.935 1 39.7 ? C1 NAG 201 A 1 HETATM 2 C C2 NAG . . . B 2 -15.119 2.325 43.212 1 45.05 ? C2 NAG 201 A 1 HETATM 3 C C3 NAG . . . B 2 -15.021 3.704 42.557 1 49.48 ? C3 NAG 201 A 1 HETATM 4 C C4 NAG . . . B 2 -14.489 4.745 43.537 1 50.41 ? C4 NAG 201 A 1 HETATM 5 C C5 NAG . . . B 2 -13.289 4.287 44.374 1 48.94 ? C5 NAG 201 A 1 HETATM 6 C C6 NAG . . . B 2 -13.163 5.218 45.566 1 44.95 ? C6 NAG 201 A 1 HETATM 7 C C7 NAG . . . B 2 -16.518 0.54 42.467 1 46.95 ? C7 NAG 201 A 1 HETATM 8 C C8 NAG . . . B 2 -16.812 -0.544 41.471 1 51.77 ? C8 NAG 201 A 1 HETATM 9 N N2 NAG . . . B 2 -15.471 1.312 42.23 1 43.49 ? N2 NAG 201 A 1 HETATM 10 O O3 NAG . . . B 2 -16.335 4.111 42.15 1 48.56 ? O3 NAG 201 A 1 HETATM 11 O O4 NAG . . . B 2 -14.069 5.904 42.81 1 56.71 ? O4 NAG 201 A 1 HETATM 12 O O5 NAG . . . B 2 -13.41 2.94 44.856 1 46.25 ? O5 NAG 201 A 1 HETATM 13 O O6 NAG . . . B 2 -11.777 5.401 45.844 1 50.94 ? O6 NAG 201 A 1 HETATM 14 O O7 NAG . . . B 2 -17.182 0.699 43.472 1 46.53 ? O7 NAG 201 A 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 283 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 14 #