data_6U72 # _model_server_result.job_id wFuBdA8Aory3IvI4ebF20g _model_server_result.datetime_utc '2025-01-10 20:51:57' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6u72 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":101}' # _entry.id 6U72 # _exptl.entry_id 6U72 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 16.023 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'AMINO GROUP' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 103.874 _cell.angle_gamma 90 _cell.entry_id 6U72 _cell.length_a 58.213 _cell.length_b 49.048 _cell.length_c 59.146 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6U72 _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall 'P 2yb' _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression B,C,D,F,G 1 1 A,E 1 2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 1_655 x+1,y,z 1 0 0 0 1 0 0 0 1 58.213 0 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 C C ACE 1 C ACE 0 1_555 C N TRP 2 C TRP 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? covale ? covale2 C CH3 ACE 1 C ACE 0 1_555 C SG CYS 15 C CYS 14 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.766 ? covale ? covale3 C C GLY 7 C GLY 6 1_555 C N ALY 8 C ALY 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale4 C C ALY 8 C ALY 7 1_555 C N THR 9 C THR 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale5 C C THR 12 C THR 11 1_555 C N ALY 13 C ALY 12 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale6 C C ALY 13 C ALY 12 1_555 C N GLN 14 C GLN 13 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale7 C C CYS 15 C CYS 14 1_555 D N NH2 . C NH2 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.43 ? # _chem_comp.formula 'H2 N' _chem_comp.formula_weight 16.023 _chem_comp.id NH2 _chem_comp.mon_nstd_flag . _chem_comp.name 'AMINO GROUP' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N HN1 NH2 sing 271 n n N HN2 NH2 sing 272 n n # _atom_sites.entry_id 6U72 _atom_sites.fract_transf_matrix[1][1] 0.017178 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.004243 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.020388 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.017415 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 3 NH2 C 1 101 15 NH2 NH2 . E 4 HOH A 1 201 18 HOH HOH . E 4 HOH A 2 202 14 HOH HOH . E 4 HOH A 3 203 49 HOH HOH . E 4 HOH A 4 204 36 HOH HOH . E 4 HOH A 5 205 25 HOH HOH . E 4 HOH A 6 206 2 HOH HOH . E 4 HOH A 7 207 15 HOH HOH . E 4 HOH A 8 208 13 HOH HOH . E 4 HOH A 9 209 11 HOH HOH . E 4 HOH A 10 210 51 HOH HOH . E 4 HOH A 11 211 26 HOH HOH . E 4 HOH A 12 212 56 HOH HOH . E 4 HOH A 13 213 39 HOH HOH . E 4 HOH A 14 214 3 HOH HOH . E 4 HOH A 15 215 29 HOH HOH . E 4 HOH A 16 216 12 HOH HOH . E 4 HOH A 17 217 44 HOH HOH . E 4 HOH A 18 218 32 HOH HOH . E 4 HOH A 19 219 10 HOH HOH . E 4 HOH A 20 220 42 HOH HOH . E 4 HOH A 21 221 28 HOH HOH . E 4 HOH A 22 222 4 HOH HOH . E 4 HOH A 23 223 46 HOH HOH . E 4 HOH A 24 224 9 HOH HOH . E 4 HOH A 25 225 50 HOH HOH . E 4 HOH A 26 226 52 HOH HOH . E 4 HOH A 27 227 6 HOH HOH . E 4 HOH A 28 228 8 HOH HOH . E 4 HOH A 29 229 23 HOH HOH . E 4 HOH A 30 230 54 HOH HOH . E 4 HOH A 31 231 45 HOH HOH . F 4 HOH B 1 201 65 HOH HOH . F 4 HOH B 2 202 64 HOH HOH . F 4 HOH B 3 203 5 HOH HOH . F 4 HOH B 4 204 1 HOH HOH . F 4 HOH B 5 205 33 HOH HOH . F 4 HOH B 6 206 17 HOH HOH . F 4 HOH B 7 207 31 HOH HOH . F 4 HOH B 8 208 47 HOH HOH . F 4 HOH B 9 209 43 HOH HOH . F 4 HOH B 10 210 37 HOH HOH . F 4 HOH B 11 211 27 HOH HOH . F 4 HOH B 12 212 55 HOH HOH . F 4 HOH B 13 213 62 HOH HOH . F 4 HOH B 14 214 41 HOH HOH . F 4 HOH B 15 215 66 HOH HOH . F 4 HOH B 16 216 59 HOH HOH . F 4 HOH B 17 217 57 HOH HOH . F 4 HOH B 18 218 63 HOH HOH . F 4 HOH B 19 219 19 HOH HOH . F 4 HOH B 20 220 16 HOH HOH . F 4 HOH B 21 221 58 HOH HOH . F 4 HOH B 22 222 22 HOH HOH . F 4 HOH B 23 223 24 HOH HOH . F 4 HOH B 24 224 53 HOH HOH . F 4 HOH B 25 225 30 HOH HOH . F 4 HOH B 26 226 21 HOH HOH . G 4 HOH C 1 201 40 HOH HOH . G 4 HOH C 2 202 7 HOH HOH . G 4 HOH C 3 203 61 HOH HOH . G 4 HOH C 4 204 34 HOH HOH . G 4 HOH C 5 205 35 HOH HOH . G 4 HOH C 6 206 20 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol N _atom_site.label_atom_id N _atom_site.label_comp_id NH2 _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id D _atom_site.label_entity_id 3 _atom_site.Cartn_x 63.96 _atom_site.Cartn_y -13.499 _atom_site.Cartn_z 25.495 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 35.77 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id N _atom_site.auth_comp_id NH2 _atom_site.auth_seq_id 101 _atom_site.auth_asym_id C _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 59 _model_server_stats.parse_time_ms 21 _model_server_stats.create_model_time_ms 14 _model_server_stats.query_time_ms 284 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 1 #