data_6U7E # _model_server_result.job_id RGyvV74qKo-xOxGcHF3ECQ _model_server_result.datetime_utc '2024-10-24 20:13:54' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6u7e # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":5001}' # _entry.id 6U7E # _exptl.entry_id 6U7E _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 65.409 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'ZINC ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 104.44 _cell.angle_gamma 90 _cell.entry_id 6U7E _cell.length_a 99.32 _cell.length_b 98.52 _cell.length_c 153.62 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6U7E _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? dimeric 2 author_defined_assembly 1 ? dimeric 2 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,E,F,I,J,K,L,M,S,T,W 1 1 B,D,G,H,N,O,P,Q,R,U,V,X 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 I N N ? 5 N N N # loop_ _pdbx_entity_branch.entity_id _pdbx_entity_branch.type 3 oligosaccharide 4 oligosaccharide # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.details _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.atom_stereo_config_1 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.atom_stereo_config_2 _pdbx_entity_branch_link.value_order 1 ? 3 2 1 NAG NAG C1 O1 . O4 HO4 . sing 2 ? 4 2 1 NAG NAG C1 O1 . O4 HO4 . sing 3 ? 4 3 2 BMA NAG C1 O1 . O4 HO4 . sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 3 n E NAG 1 E 1 NAG A 5006 NAG 3 n E NAG 2 E 2 NAG A 5007 NAG 4 n F NAG 1 F 1 NAG A 5009 NAG 4 n F NAG 2 F 2 NAG A 5010 NAG 4 n F BMA 3 F 3 BMA A 5011 BMA 4 n G NAG 1 G 1 NAG B 5003 NAG 4 n G NAG 2 G 2 NAG B 5004 NAG 4 n G BMA 3 G 3 BMA B 5005 BMA 3 n H NAG 1 H 1 NAG B 5007 NAG 3 n H NAG 2 H 2 NAG B 5008 NAG # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 700 A CYS 761 1_555 A SG CYS 707 A CYS 768 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? disulf ? disulf2 A SG CYS 737 A CYS 798 1_555 A SG CYS 773 A CYS 834 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? disulf ? disulf3 B SG CYS 700 B CYS 761 1_555 B SG CYS 707 B CYS 768 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? disulf ? disulf4 B SG CYS 737 B CYS 798 1_555 B SG CYS 773 B CYS 834 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? disulf ? disulf5 C SG CYS 29 C CYS 317 1_555 C SG CYS 32 C CYS 320 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? disulf ? disulf6 C SG CYS 52 C CYS 340 1_555 C SG CYS 96 C CYS 384 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf7 C SG CYS 79 C CYS 367 1_555 C SG CYS 106 C CYS 394 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf8 D SG CYS 29 D CYS 317 1_555 D SG CYS 32 D CYS 320 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf9 D SG CYS 52 D CYS 340 1_555 D SG CYS 96 D CYS 384 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf10 D SG CYS 79 D CYS 367 1_555 D SG CYS 106 D CYS 394 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? covale ? covale1 A ND2 ASN 67 A ASN 128 1_555 J C1 NAG . A NAG 5002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.429 ? covale ? covale2 A ND2 ASN 173 A ASN 234 1_555 K C1 NAG . A NAG 5003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.433 ? covale ? covale3 A ND2 ASN 204 A ASN 265 1_555 F C1 NAG . F NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.436 ? covale ? covale4 A ND2 ASN 258 A ASN 319 1_555 L C1 NAG . A NAG 5004 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.424 ? covale ? covale5 A ND2 ASN 564 A ASN 625 1_555 E C1 NAG . E NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.43 ? covale ? covale6 A ND2 ASN 620 A ASN 681 1_555 M C1 NAG . A NAG 5007 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.43 ? covale ? covale7 B ND2 ASN 67 B ASN 128 1_555 O C1 NAG . B NAG 5002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.431 ? covale ? covale8 B ND2 ASN 173 B ASN 234 1_555 G C1 NAG . G NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.436 ? covale ? covale9 B ND2 ASN 204 B ASN 265 1_555 R C1 NAG . B NAG 5010 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.42 ? covale ? covale10 B ND2 ASN 258 B ASN 319 1_555 P C1 NAG . B NAG 5006 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.435 ? covale ? covale11 B ND2 ASN 564 B ASN 625 1_555 H C1 NAG . H NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.433 ? covale ? covale12 B ND2 ASN 620 B ASN 681 1_555 Q C1 NAG . B NAG 5009 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.435 ? covale ? covale13 C ND2 ASN 38 C ASN 326 1_555 S C1 NAG . C NAG 2001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.432 ? covale ? covale14 C ND2 ASN 45 C ASN 333 1_555 T C1 NAG . C NAG 2002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.436 ? covale ? covale15 D ND2 ASN 38 D ASN 326 1_555 U C1 NAG . D NAG 2001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.437 ? covale ? covale16 D ND2 ASN 45 D ASN 333 1_555 V C1 NAG . D NAG 2002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.438 ? covale ? covale17 E O4 NAG . E NAG 1 1_555 E C1 NAG . E NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.43 ? covale ? covale18 F O4 NAG . F NAG 1 1_555 F C1 NAG . F NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.43 ? covale ? covale19 F O4 NAG . F NAG 2 1_555 F C1 BMA . F BMA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.437 ? covale ? covale20 G O4 NAG . G NAG 1 1_555 G C1 NAG . G NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.438 ? covale ? covale21 G O4 NAG . G NAG 2 1_555 G C1 BMA . G BMA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.438 ? covale ? covale22 H O4 NAG . H NAG 1 1_555 H C1 NAG . H NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.435 ? metalc ? metalc1 A NE2 HIS 327 A HIS 388 1_555 I ZN ZN . A ZN 5001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? metalc ? metalc2 A NE2 HIS 331 A HIS 392 1_555 I ZN ZN . A ZN 5001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.057 ? metalc ? metalc3 A OE1 GLU 350 A GLU 411 1_555 I ZN ZN . A ZN 5001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.848 ? metalc ? metalc4 A OE2 GLU 350 A GLU 411 1_555 I ZN ZN . A ZN 5001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.587 ? metalc ? metalc5 I ZN ZN . A ZN 5001 1_555 W O HOH . A HOH 5101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.657 ? metalc ? metalc6 B NE2 HIS 327 B HIS 388 1_555 N ZN ZN . B ZN 5001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.071 ? metalc ? metalc7 B NE2 HIS 331 B HIS 392 1_555 N ZN ZN . B ZN 5001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.146 ? metalc ? metalc8 B OE1 GLU 350 B GLU 411 1_555 N ZN ZN . B ZN 5001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.856 ? metalc ? metalc9 B OE2 GLU 350 B GLU 411 1_555 N ZN ZN . B ZN 5001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.424 ? # _chem_comp.formula 'Zn 2' _chem_comp.formula_weight 65.409 _chem_comp.id ZN _chem_comp.mon_nstd_flag . _chem_comp.name 'ZINC ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 6U7E _atom_sites.fract_transf_matrix[1][1] 0.010068 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.002592 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01015 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006722 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code I 5 ZN A 1 5001 5001 ZN ZN . J 6 NAG A 1 5002 5002 NAG NAG . K 6 NAG A 1 5003 5003 NAG NAG . L 6 NAG A 1 5004 5005 NAG NAG . M 6 NAG A 1 5007 5008 NAG NAG . N 5 ZN B 1 5001 5001 ZN ZN . O 6 NAG B 1 5002 5002 NAG NAG . P 6 NAG B 1 5006 5006 NAG NAG . Q 6 NAG B 1 5009 5009 NAG NAG . R 6 NAG B 1 5010 5010 NAG NAG . S 6 NAG C 1 2001 2001 NAG NAG . T 6 NAG C 1 2002 2002 NAG NAG . U 6 NAG D 1 2001 2001 NAG NAG . V 6 NAG D 1 2002 2002 NAG NAG . W 7 HOH A 1 5101 1 HOH HOH . W 7 HOH A 2 5102 2 HOH HOH . W 7 HOH A 3 5103 3 HOH HOH . X 7 HOH B 1 5101 4 HOH HOH . X 7 HOH B 2 5102 5 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol ZN _atom_site.label_atom_id ZN _atom_site.label_comp_id ZN _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id I _atom_site.label_entity_id 5 _atom_site.Cartn_x -50.221 _atom_site.Cartn_y 9.974 _atom_site.Cartn_z -28.18 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 85.32 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id ZN _atom_site.auth_comp_id ZN _atom_site.auth_seq_id 5001 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 40 _model_server_stats.parse_time_ms 17 _model_server_stats.create_model_time_ms 21 _model_server_stats.query_time_ms 320 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 1 #