data_6U7E # _model_server_result.job_id 2wzlIh5GwSYnGfUKBTNmbA _model_server_result.datetime_utc '2024-11-21 09:06:23' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6u7e # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"O","auth_seq_id":5002}' # _entry.id 6U7E # _exptl.entry_id 6U7E _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 221.208 _entity.id 6 _entity.src_method man _entity.type non-polymer _entity.pdbx_description 2-acetamido-2-deoxy-beta-D-glucopyranose _entity.pdbx_number_of_molecules 12 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 104.44 _cell.angle_gamma 90 _cell.entry_id 6U7E _cell.length_a 99.32 _cell.length_b 98.52 _cell.length_c 153.62 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6U7E _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? dimeric 2 author_defined_assembly 1 ? dimeric 2 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,E,F,I,J,K,L,M,S,T,W 1 1 B,D,G,H,N,O,P,Q,R,U,V,X 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 6 J N N ? 6 K N N ? 6 L N N ? 6 M N N ? 6 O N N ? 6 P N N ? 6 Q N N ? 6 R N N ? 6 S N N ? 6 T N N ? 6 U N N ? 6 V N N # loop_ _pdbx_entity_branch.entity_id _pdbx_entity_branch.type 3 oligosaccharide 4 oligosaccharide # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.details _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.atom_stereo_config_1 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.atom_stereo_config_2 _pdbx_entity_branch_link.value_order 1 ? 3 2 1 NAG NAG C1 O1 . O4 HO4 . sing 2 ? 4 2 1 NAG NAG C1 O1 . O4 HO4 . sing 3 ? 4 3 2 BMA NAG C1 O1 . O4 HO4 . sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 3 n E NAG 1 E 1 NAG A 5006 NAG 3 n E NAG 2 E 2 NAG A 5007 NAG 4 n F NAG 1 F 1 NAG A 5009 NAG 4 n F NAG 2 F 2 NAG A 5010 NAG 4 n F BMA 3 F 3 BMA A 5011 BMA 4 n G NAG 1 G 1 NAG B 5003 NAG 4 n G NAG 2 G 2 NAG B 5004 NAG 4 n G BMA 3 G 3 BMA B 5005 BMA 3 n H NAG 1 H 1 NAG B 5007 NAG 3 n H NAG 2 H 2 NAG B 5008 NAG # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 700 A CYS 761 1_555 A SG CYS 707 A CYS 768 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? disulf ? disulf2 A SG CYS 737 A CYS 798 1_555 A SG CYS 773 A CYS 834 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? disulf ? disulf3 B SG CYS 700 B CYS 761 1_555 B SG CYS 707 B CYS 768 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? disulf ? disulf4 B SG CYS 737 B CYS 798 1_555 B SG CYS 773 B CYS 834 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? disulf ? disulf5 C SG CYS 29 C CYS 317 1_555 C SG CYS 32 C CYS 320 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? disulf ? disulf6 C SG CYS 52 C CYS 340 1_555 C SG CYS 96 C CYS 384 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf7 C SG CYS 79 C CYS 367 1_555 C SG CYS 106 C CYS 394 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf8 D SG CYS 29 D CYS 317 1_555 D SG CYS 32 D CYS 320 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf9 D SG CYS 52 D CYS 340 1_555 D SG CYS 96 D CYS 384 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf10 D SG CYS 79 D CYS 367 1_555 D SG CYS 106 D CYS 394 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? covale ? covale1 A ND2 ASN 67 A ASN 128 1_555 J C1 NAG . A NAG 5002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.429 ? covale ? covale2 A ND2 ASN 173 A ASN 234 1_555 K C1 NAG . A NAG 5003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.433 ? covale ? covale3 A ND2 ASN 204 A ASN 265 1_555 F C1 NAG . F NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.436 ? covale ? covale4 A ND2 ASN 258 A ASN 319 1_555 L C1 NAG . A NAG 5004 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.424 ? covale ? covale5 A ND2 ASN 564 A ASN 625 1_555 E C1 NAG . E NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.43 ? covale ? covale6 A ND2 ASN 620 A ASN 681 1_555 M C1 NAG . A NAG 5007 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.43 ? covale ? covale7 B ND2 ASN 67 B ASN 128 1_555 O C1 NAG . B NAG 5002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.431 ? covale ? covale8 B ND2 ASN 173 B ASN 234 1_555 G C1 NAG . G NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.436 ? covale ? covale9 B ND2 ASN 204 B ASN 265 1_555 R C1 NAG . B NAG 5010 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.42 ? covale ? covale10 B ND2 ASN 258 B ASN 319 1_555 P C1 NAG . B NAG 5006 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.435 ? covale ? covale11 B ND2 ASN 564 B ASN 625 1_555 H C1 NAG . H NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.433 ? covale ? covale12 B ND2 ASN 620 B ASN 681 1_555 Q C1 NAG . B NAG 5009 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.435 ? covale ? covale13 C ND2 ASN 38 C ASN 326 1_555 S C1 NAG . C NAG 2001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.432 ? covale ? covale14 C ND2 ASN 45 C ASN 333 1_555 T C1 NAG . C NAG 2002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.436 ? covale ? covale15 D ND2 ASN 38 D ASN 326 1_555 U C1 NAG . D NAG 2001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.437 ? covale ? covale16 D ND2 ASN 45 D ASN 333 1_555 V C1 NAG . D NAG 2002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.438 ? covale ? covale17 E O4 NAG . E NAG 1 1_555 E C1 NAG . E NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.43 ? covale ? covale18 F O4 NAG . F NAG 1 1_555 F C1 NAG . F NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.43 ? covale ? covale19 F O4 NAG . F NAG 2 1_555 F C1 BMA . F BMA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.437 ? covale ? covale20 G O4 NAG . G NAG 1 1_555 G C1 NAG . G NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.438 ? covale ? covale21 G O4 NAG . G NAG 2 1_555 G C1 BMA . G BMA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.438 ? covale ? covale22 H O4 NAG . H NAG 1 1_555 H C1 NAG . H NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.435 ? metalc ? metalc1 A NE2 HIS 327 A HIS 388 1_555 I ZN ZN . A ZN 5001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? metalc ? metalc2 A NE2 HIS 331 A HIS 392 1_555 I ZN ZN . A ZN 5001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.057 ? metalc ? metalc3 A OE1 GLU 350 A GLU 411 1_555 I ZN ZN . A ZN 5001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.848 ? metalc ? metalc4 A OE2 GLU 350 A GLU 411 1_555 I ZN ZN . A ZN 5001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.587 ? metalc ? metalc5 I ZN ZN . A ZN 5001 1_555 W O HOH . A HOH 5101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.657 ? metalc ? metalc6 B NE2 HIS 327 B HIS 388 1_555 N ZN ZN . B ZN 5001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.071 ? metalc ? metalc7 B NE2 HIS 331 B HIS 392 1_555 N ZN ZN . B ZN 5001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.146 ? metalc ? metalc8 B OE1 GLU 350 B GLU 411 1_555 N ZN ZN . B ZN 5001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.856 ? metalc ? metalc9 B OE2 GLU 350 B GLU 411 1_555 N ZN ZN . B ZN 5001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.424 ? # _chem_comp.formula 'C8 H15 N O6' _chem_comp.formula_weight 221.208 _chem_comp.id NAG _chem_comp.mon_nstd_flag . _chem_comp.name 2-acetamido-2-deoxy-beta-D-glucopyranose _chem_comp.type 'd-saccharide, beta linking' _chem_comp.pdbx_synonyms N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 NAG sing 261 n n C1 O1 NAG sing 262 n n C1 O5 NAG sing 263 n n C1 H1 NAG sing 264 n n C2 C3 NAG sing 265 n n C2 N2 NAG sing 266 n n C2 H2 NAG sing 267 n n C3 C4 NAG sing 268 n n C3 O3 NAG sing 269 n n C3 H3 NAG sing 270 n n C4 C5 NAG sing 271 n n C4 O4 NAG sing 272 n n C4 H4 NAG sing 273 n n C5 C6 NAG sing 274 n n C5 O5 NAG sing 275 n n C5 H5 NAG sing 276 n n C6 O6 NAG sing 277 n n C6 H61 NAG sing 278 n n C6 H62 NAG sing 279 n n C7 C8 NAG sing 280 n n C7 N2 NAG sing 281 n n C7 O7 NAG doub 282 n n C8 H81 NAG sing 283 n n C8 H82 NAG sing 284 n n C8 H83 NAG sing 285 n n N2 HN2 NAG sing 286 n n O1 HO1 NAG sing 287 n n O3 HO3 NAG sing 288 n n O4 HO4 NAG sing 289 n n O6 HO6 NAG sing 290 n n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 6U7E _atom_sites.fract_transf_matrix[1][1] 0.010068 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.002592 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01015 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006722 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code I 5 ZN A 1 5001 5001 ZN ZN . J 6 NAG A 1 5002 5002 NAG NAG . K 6 NAG A 1 5003 5003 NAG NAG . L 6 NAG A 1 5004 5005 NAG NAG . M 6 NAG A 1 5007 5008 NAG NAG . N 5 ZN B 1 5001 5001 ZN ZN . O 6 NAG B 1 5002 5002 NAG NAG . P 6 NAG B 1 5006 5006 NAG NAG . Q 6 NAG B 1 5009 5009 NAG NAG . R 6 NAG B 1 5010 5010 NAG NAG . S 6 NAG C 1 2001 2001 NAG NAG . T 6 NAG C 1 2002 2002 NAG NAG . U 6 NAG D 1 2001 2001 NAG NAG . V 6 NAG D 1 2002 2002 NAG NAG . W 7 HOH A 1 5101 1 HOH HOH . W 7 HOH A 2 5102 2 HOH HOH . W 7 HOH A 3 5103 3 HOH HOH . X 7 HOH B 1 5101 4 HOH HOH . X 7 HOH B 2 5102 5 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 NAG . . . O 6 27.004 -16.309 -45.571 1 101.44 ? C1 NAG 5002 B 1 HETATM 2 C C2 NAG . . . O 6 26.673 -16.548 -44.103 1 99.76 ? C2 NAG 5002 B 1 HETATM 3 C C3 NAG . . . O 6 25.606 -15.562 -43.64 1 99.48 ? C3 NAG 5002 B 1 HETATM 4 C C4 NAG . . . O 6 26.052 -14.135 -43.928 1 102.18 ? C4 NAG 5002 B 1 HETATM 5 C C5 NAG . . . O 6 26.428 -13.987 -45.401 1 103.4 ? C5 NAG 5002 B 1 HETATM 6 C C6 NAG . . . O 6 27.009 -12.631 -45.731 1 105.99 ? C6 NAG 5002 B 1 HETATM 7 C C7 NAG . . . O 6 26.074 -18.449 -42.667 1 100.48 ? C7 NAG 5002 B 1 HETATM 8 C C8 NAG . . . O 6 25.63 -19.879 -42.628 1 98.98 ? C8 NAG 5002 B 1 HETATM 9 N N2 NAG . . . O 6 26.24 -17.919 -43.884 1 99.6 ? N2 NAG 5002 B 1 HETATM 10 O O3 NAG . . . O 6 25.367 -15.725 -42.247 1 98.74 ? O3 NAG 5002 B 1 HETATM 11 O O4 NAG . . . O 6 25.005 -13.225 -43.614 1 103.87 ? O4 NAG 5002 B 1 HETATM 12 O O5 NAG . . . O 6 27.425 -14.958 -45.753 1 103.17 ? O5 NAG 5002 B 1 HETATM 13 O O6 NAG . . . O 6 27.964 -12.718 -46.78 1 107.63 ? O6 NAG 5002 B 1 HETATM 14 O O7 NAG . . . O 6 26.269 -17.8 -41.644 1 102.66 ? O7 NAG 5002 B 1 # _model_server_stats.io_time_ms 37 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 17 _model_server_stats.query_time_ms 283 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 14 #