data_6U7O # _model_server_result.job_id ipvS1yJ_IJLRh8pAyXYeyA _model_server_result.datetime_utc '2025-01-10 11:39:36' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6u7o # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":501}' # _entry.id 6U7O # _exptl.entry_id 6U7O _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 22.99 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SODIUM ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6U7O _cell.length_a 58.921 _cell.length_b 86.479 _cell.length_c 45.875 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6U7O _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A O ASP 60 A ASP 60 1_555 C NA NA . A NA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.377 ? metalc ? metalc2 C NA NA . A NA 501 1_555 K O HOH . A HOH 615 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.392 ? metalc ? metalc3 C NA NA . A NA 501 1_555 K O HOH . A HOH 632 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.297 ? metalc ? metalc4 C NA NA . A NA 501 1_555 K O HOH . A HOH 657 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.375 ? metalc ? metalc5 C NA NA . A NA 501 1_555 K O HOH . A HOH 660 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.383 ? metalc ? metalc6 C NA NA . A NA 501 1_555 K O HOH . A HOH 675 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.679 ? # _chem_comp.formula 'Na 1' _chem_comp.formula_weight 22.99 _chem_comp.id NA _chem_comp.mon_nstd_flag . _chem_comp.name 'SODIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 6U7O _atom_sites.fract_transf_matrix[1][1] 0.016972 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011564 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.021798 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 NA A 1 501 501 NA NA . D 3 CL A 1 502 512 CL CL . E 3 CL A 1 503 514 CL CL . F 4 FMT A 1 504 521 FMT FMT . G 5 GOL A 1 505 541 GOL GOL . H 6 Q1D B 1 201 201 Q1D B2R . I 3 CL B 1 202 511 CL CL . J 3 CL B 1 203 513 CL CL . K 7 HOH A 1 601 1244 HOH HOH . K 7 HOH A 2 602 1241 HOH HOH . K 7 HOH A 3 603 1251 HOH HOH . K 7 HOH A 4 604 1210 HOH HOH . K 7 HOH A 5 605 1213 HOH HOH . K 7 HOH A 6 606 1172 HOH HOH . K 7 HOH A 7 607 1090 HOH HOH . K 7 HOH A 8 608 1192 HOH HOH . K 7 HOH A 9 609 1191 HOH HOH . K 7 HOH A 10 610 1323 HOH HOH . K 7 HOH A 11 611 1335 HOH HOH . K 7 HOH A 12 612 1211 HOH HOH . K 7 HOH A 13 613 1081 HOH HOH . K 7 HOH A 14 614 1082 HOH HOH . K 7 HOH A 15 615 1002 HOH HOH . K 7 HOH A 16 616 1228 HOH HOH . K 7 HOH A 17 617 1154 HOH HOH . K 7 HOH A 18 618 1200 HOH HOH . K 7 HOH A 19 619 1152 HOH HOH . K 7 HOH A 20 620 1314 HOH HOH . K 7 HOH A 21 621 1351 HOH HOH . K 7 HOH A 22 622 1156 HOH HOH . K 7 HOH A 23 623 1012 HOH HOH . K 7 HOH A 24 624 1202 HOH HOH . K 7 HOH A 25 625 1248 HOH HOH . K 7 HOH A 26 626 1321 HOH HOH . K 7 HOH A 27 627 1250 HOH HOH . K 7 HOH A 28 628 1270 HOH HOH . K 7 HOH A 29 629 1031 HOH HOH . K 7 HOH A 30 630 1155 HOH HOH . K 7 HOH A 31 631 1174 HOH HOH . K 7 HOH A 32 632 1003 HOH HOH . K 7 HOH A 33 633 1284 HOH HOH . K 7 HOH A 34 634 1195 HOH HOH . K 7 HOH A 35 635 1058 HOH HOH . K 7 HOH A 36 636 1161 HOH HOH . K 7 HOH A 37 637 1349 HOH HOH . K 7 HOH A 38 638 1160 HOH HOH . K 7 HOH A 39 639 1173 HOH HOH . K 7 HOH A 40 640 1091 HOH HOH . K 7 HOH A 41 641 1278 HOH HOH . K 7 HOH A 42 642 1359 HOH HOH . K 7 HOH A 43 643 1342 HOH HOH . K 7 HOH A 44 644 1083 HOH HOH . K 7 HOH A 45 645 1095 HOH HOH . K 7 HOH A 46 646 1242 HOH HOH . K 7 HOH A 47 647 1084 HOH HOH . K 7 HOH A 48 648 1320 HOH HOH . K 7 HOH A 49 649 1223 HOH HOH . K 7 HOH A 50 650 1308 HOH HOH . K 7 HOH A 51 651 1272 HOH HOH . K 7 HOH A 52 652 1234 HOH HOH . K 7 HOH A 53 653 1221 HOH HOH . K 7 HOH A 54 654 1089 HOH HOH . K 7 HOH A 55 655 1188 HOH HOH . K 7 HOH A 56 656 1087 HOH HOH . K 7 HOH A 57 657 1006 HOH HOH . K 7 HOH A 58 658 1289 HOH HOH . K 7 HOH A 59 659 1015 HOH HOH . K 7 HOH A 60 660 1004 HOH HOH . K 7 HOH A 61 661 1317 HOH HOH . K 7 HOH A 62 662 1217 HOH HOH . K 7 HOH A 63 663 1316 HOH HOH . K 7 HOH A 64 664 1196 HOH HOH . K 7 HOH A 65 665 1157 HOH HOH . K 7 HOH A 66 666 1177 HOH HOH . K 7 HOH A 67 667 1231 HOH HOH . K 7 HOH A 68 668 1360 HOH HOH . K 7 HOH A 69 669 1280 HOH HOH . K 7 HOH A 70 670 1246 HOH HOH . K 7 HOH A 71 671 1275 HOH HOH . K 7 HOH A 72 672 1330 HOH HOH . K 7 HOH A 73 673 1361 HOH HOH . K 7 HOH A 74 674 1189 HOH HOH . K 7 HOH A 75 675 1005 HOH HOH . K 7 HOH A 76 676 1163 HOH HOH . K 7 HOH A 77 677 1326 HOH HOH . K 7 HOH A 78 678 1346 HOH HOH . K 7 HOH A 79 679 1306 HOH HOH . K 7 HOH A 80 680 1169 HOH HOH . K 7 HOH A 81 681 1088 HOH HOH . K 7 HOH A 82 682 1029 HOH HOH . K 7 HOH A 83 683 1226 HOH HOH . K 7 HOH A 84 684 1338 HOH HOH . K 7 HOH A 85 685 1355 HOH HOH . K 7 HOH A 86 686 1215 HOH HOH . K 7 HOH A 87 687 1282 HOH HOH . K 7 HOH A 88 688 1285 HOH HOH . K 7 HOH A 89 689 1345 HOH HOH . K 7 HOH A 90 690 1180 HOH HOH . K 7 HOH A 91 691 1336 HOH HOH . K 7 HOH A 92 692 1309 HOH HOH . K 7 HOH A 93 693 1356 HOH HOH . K 7 HOH A 94 694 1310 HOH HOH . K 7 HOH A 95 695 1220 HOH HOH . K 7 HOH A 96 696 1340 HOH HOH . K 7 HOH A 97 697 1341 HOH HOH . K 7 HOH A 98 698 1178 HOH HOH . K 7 HOH A 99 699 1307 HOH HOH . K 7 HOH A 100 700 1283 HOH HOH . K 7 HOH A 101 701 1170 HOH HOH . K 7 HOH A 102 702 1243 HOH HOH . K 7 HOH A 103 703 1057 HOH HOH . K 7 HOH A 104 704 1339 HOH HOH . K 7 HOH A 105 705 1312 HOH HOH . K 7 HOH A 106 706 1247 HOH HOH . L 7 HOH B 1 301 1025 HOH HOH . L 7 HOH B 2 302 1001 HOH HOH . L 7 HOH B 3 303 1293 HOH HOH . L 7 HOH B 4 304 1358 HOH HOH . L 7 HOH B 5 305 1027 HOH HOH . L 7 HOH B 6 306 1179 HOH HOH . L 7 HOH B 7 307 1269 HOH HOH . L 7 HOH B 8 308 1072 HOH HOH . L 7 HOH B 9 309 1232 HOH HOH . L 7 HOH B 10 310 1303 HOH HOH . L 7 HOH B 11 311 1302 HOH HOH . L 7 HOH B 12 312 1073 HOH HOH . L 7 HOH B 13 313 1182 HOH HOH . L 7 HOH B 14 314 1181 HOH HOH . L 7 HOH B 15 315 1165 HOH HOH . L 7 HOH B 16 316 1168 HOH HOH . L 7 HOH B 17 317 1074 HOH HOH . L 7 HOH B 18 318 1187 HOH HOH . L 7 HOH B 19 319 1230 HOH HOH . L 7 HOH B 20 320 1292 HOH HOH . L 7 HOH B 21 321 1304 HOH HOH . L 7 HOH B 22 322 1061 HOH HOH . L 7 HOH B 23 323 1071 HOH HOH . L 7 HOH B 24 324 1227 HOH HOH . L 7 HOH B 25 325 1164 HOH HOH . L 7 HOH B 26 326 1021 HOH HOH . L 7 HOH B 27 327 1028 HOH HOH . L 7 HOH B 28 328 1053 HOH HOH . L 7 HOH B 29 329 1151 HOH HOH . L 7 HOH B 30 330 1183 HOH HOH . L 7 HOH B 31 331 1204 HOH HOH . L 7 HOH B 32 332 1337 HOH HOH . L 7 HOH B 33 333 1167 HOH HOH . L 7 HOH B 34 334 1176 HOH HOH . L 7 HOH B 35 335 1273 HOH HOH . L 7 HOH B 36 336 1193 HOH HOH . L 7 HOH B 37 337 1216 HOH HOH . L 7 HOH B 38 338 1166 HOH HOH . L 7 HOH B 39 339 1219 HOH HOH . L 7 HOH B 40 340 1203 HOH HOH . L 7 HOH B 41 341 1153 HOH HOH . L 7 HOH B 42 342 1158 HOH HOH . L 7 HOH B 43 343 1240 HOH HOH . L 7 HOH B 44 344 1239 HOH HOH . L 7 HOH B 45 345 1159 HOH HOH . L 7 HOH B 46 346 1075 HOH HOH . L 7 HOH B 47 347 1327 HOH HOH . L 7 HOH B 48 348 1052 HOH HOH . L 7 HOH B 49 349 1249 HOH HOH . L 7 HOH B 50 350 1218 HOH HOH . L 7 HOH B 51 351 1094 HOH HOH . L 7 HOH B 52 352 1311 HOH HOH . L 7 HOH B 53 353 1286 HOH HOH . L 7 HOH B 54 354 1238 HOH HOH . L 7 HOH B 55 355 1276 HOH HOH . L 7 HOH B 56 356 1252 HOH HOH . L 7 HOH B 57 357 1194 HOH HOH . L 7 HOH B 58 358 1206 HOH HOH . L 7 HOH B 59 359 1212 HOH HOH . L 7 HOH B 60 360 1051 HOH HOH . L 7 HOH B 61 361 1022 HOH HOH . L 7 HOH B 62 362 1318 HOH HOH . L 7 HOH B 63 363 1328 HOH HOH . L 7 HOH B 64 364 1274 HOH HOH . L 7 HOH B 65 365 1279 HOH HOH . L 7 HOH B 66 366 1011 HOH HOH . L 7 HOH B 67 367 1229 HOH HOH . L 7 HOH B 68 368 1222 HOH HOH . L 7 HOH B 69 369 1291 HOH HOH . L 7 HOH B 70 370 1076 HOH HOH . L 7 HOH B 71 371 1281 HOH HOH . L 7 HOH B 72 372 1205 HOH HOH . L 7 HOH B 73 373 1198 HOH HOH . L 7 HOH B 74 374 1190 HOH HOH . L 7 HOH B 75 375 1016 HOH HOH . L 7 HOH B 76 376 1199 HOH HOH . L 7 HOH B 77 377 1208 HOH HOH . L 7 HOH B 78 378 1235 HOH HOH . L 7 HOH B 79 379 1277 HOH HOH . L 7 HOH B 80 380 1225 HOH HOH . L 7 HOH B 81 381 1224 HOH HOH . L 7 HOH B 82 382 1186 HOH HOH . L 7 HOH B 83 383 1325 HOH HOH . L 7 HOH B 84 384 1197 HOH HOH . L 7 HOH B 85 385 1301 HOH HOH . L 7 HOH B 86 386 1162 HOH HOH . L 7 HOH B 87 387 1175 HOH HOH . L 7 HOH B 88 388 1233 HOH HOH . L 7 HOH B 89 389 1026 HOH HOH . L 7 HOH B 90 390 1353 HOH HOH . L 7 HOH B 91 391 1201 HOH HOH . L 7 HOH B 92 392 1171 HOH HOH . L 7 HOH B 93 393 1014 HOH HOH . L 7 HOH B 94 394 1352 HOH HOH . L 7 HOH B 95 395 1287 HOH HOH . L 7 HOH B 96 396 1184 HOH HOH . L 7 HOH B 97 397 1322 HOH HOH . L 7 HOH B 98 398 1214 HOH HOH . L 7 HOH B 99 399 1288 HOH HOH . L 7 HOH B 100 400 1237 HOH HOH . L 7 HOH B 101 401 1344 HOH HOH . L 7 HOH B 102 402 1268 HOH HOH . L 7 HOH B 103 403 1209 HOH HOH . L 7 HOH B 104 404 1348 HOH HOH . L 7 HOH B 105 405 1357 HOH HOH . L 7 HOH B 106 406 1093 HOH HOH . L 7 HOH B 107 407 1207 HOH HOH . L 7 HOH B 108 408 1319 HOH HOH . L 7 HOH B 109 409 1013 HOH HOH . L 7 HOH B 110 410 1290 HOH HOH . L 7 HOH B 111 411 1062 HOH HOH . L 7 HOH B 112 412 1271 HOH HOH . L 7 HOH B 113 413 1305 HOH HOH . L 7 HOH B 114 414 1245 HOH HOH . L 7 HOH B 115 415 1354 HOH HOH . L 7 HOH B 116 416 1085 HOH HOH . L 7 HOH B 117 417 1350 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol NA _atom_site.label_atom_id NA _atom_site.label_comp_id NA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id C _atom_site.label_entity_id 2 _atom_site.Cartn_x 24.521 _atom_site.Cartn_y 39.996 _atom_site.Cartn_z 1.3 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 24.03 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id NA _atom_site.auth_comp_id NA _atom_site.auth_seq_id 501 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 254 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 1 #