data_6U7T # _model_server_result.job_id sbGqqSSYe2rKB6LUNvbHYw _model_server_result.datetime_utc '2025-01-31 05:13:17' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6u7t # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":403}' # _entry.id 6U7T # _exptl.entry_id 6U7T _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 40.078 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CALCIUM ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6U7T _cell.length_a 37.8 _cell.length_b 86.49 _cell.length_c 140.58 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6U7T _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 E N N ? 5 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 B O3' DC 5 B DC 5 1_555 B P 8OG 6 B 8OG 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.607 ? covale ? covale2 B O3' 8OG 6 B 8OG 6 1_555 B P DT 7 B DT 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.602 ? covale ? covale3 C O3' DA 6 C DA 17 1_555 C P NR1 7 C NR1 18 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.556 ? covale ? covale4 C O3' NR1 7 C NR1 18 1_555 C P DG 8 C DG 19 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.603 ? metalc ? metalc1 A O SER 118 A SER 118 1_555 E CA CA . A CA 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.707 ? metalc ? metalc2 A OG SER 118 A SER 118 1_555 E CA CA . A CA 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.664 ? metalc ? metalc3 A O VAL 123 A VAL 123 1_555 E CA CA . A CA 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.431 ? metalc ? metalc4 A SG CYS 198 A CYS 198 1_555 D FE3 SF4 . A SF4 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.289 ? metalc ? metalc5 A SG CYS 205 A CYS 205 1_555 D FE2 SF4 . A SF4 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.324 ? metalc ? metalc6 A SG CYS 208 A CYS 208 1_555 D FE1 SF4 . A SF4 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.331 ? metalc ? metalc7 A SG CYS 214 A CYS 214 1_555 D FE4 SF4 . A SF4 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.346 ? metalc ? metalc8 A OD2 ASP 257 A ASP 257 1_555 F CA CA . A CA 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.308 ? metalc ? metalc9 A O THR 259 A THR 259 1_555 F CA CA . A CA 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.299 ? metalc ? metalc10 A OG1 THR 259 A THR 259 1_555 F CA CA . A CA 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.288 ? metalc ? metalc11 E CA CA . A CA 402 1_555 G O HOH . A HOH 507 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.314 ? metalc ? metalc12 E CA CA . A CA 402 1_555 G O HOH . A HOH 538 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.277 ? metalc ? metalc13 E CA CA . A CA 402 1_555 G O HOH . A HOH 545 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.189 ? metalc ? metalc14 E CA CA . A CA 402 1_555 I O HOH . C HOH 103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.236 ? hydrog WATSON-CRICK hydrog1 B N1 DA 2 B DA 2 1_555 C N3 DT 11 C DT 22 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog2 B N6 DA 2 B DA 2 1_555 C O4 DT 11 C DT 22 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog3 B N1 DG 3 B DG 3 1_555 C N3 DC 10 C DC 21 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog4 B N2 DG 3 B DG 3 1_555 C O2 DC 10 C DC 21 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog5 B O6 DG 3 B DG 3 1_555 C N4 DC 10 C DC 21 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog6 B N1 DA 4 B DA 4 1_555 C N3 DT 9 C DT 20 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog7 B N6 DA 4 B DA 4 1_555 C O4 DT 9 C DT 20 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog8 B N3 DC 5 B DC 5 1_555 C N1 DG 8 C DG 19 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog9 B N4 DC 5 B DC 5 1_555 C O6 DG 8 C DG 19 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog10 B O2 DC 5 B DC 5 1_555 C N2 DG 8 C DG 19 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog11 B N3 DT 7 B DT 7 1_555 C N1 DA 6 C DA 17 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog12 B O4 DT 7 B DT 7 1_555 C N6 DA 6 C DA 17 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog13 B N1 DG 8 B DG 8 1_555 C N3 DC 5 C DC 16 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog14 B N2 DG 8 B DG 8 1_555 C O2 DC 5 C DC 16 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog15 B O6 DG 8 B DG 8 1_555 C N4 DC 5 C DC 16 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog16 B N1 DG 9 B DG 9 1_555 C N3 DC 4 C DC 15 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog17 B N2 DG 9 B DG 9 1_555 C O2 DC 4 C DC 15 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog18 B O6 DG 9 B DG 9 1_555 C N4 DC 4 C DC 15 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog19 B N1 DA 10 B DA 10 1_555 C N3 DT 3 C DT 14 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog20 B N6 DA 10 B DA 10 1_555 C O4 DT 3 C DT 14 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog21 B N3 DC 11 B DC 11 1_555 C N1 DG 2 C DG 13 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog22 B N4 DC 11 B DC 11 1_555 C O6 DG 2 C DG 13 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog23 B O2 DC 11 B DC 11 1_555 C N2 DG 2 C DG 13 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? # _chem_comp.formula 'Ca 2' _chem_comp.formula_weight 40.078 _chem_comp.id CA _chem_comp.mon_nstd_flag . _chem_comp.name 'CALCIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 6U7T _atom_sites.fract_transf_matrix[1][1] 0.026455 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011562 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007113 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 SF4 A 1 401 400 SF4 SF4 . E 5 CA A 1 402 501 CA CA . F 5 CA A 1 403 1 CA CA . G 6 HOH A 1 501 14 HOH HOH . G 6 HOH A 2 502 23 HOH HOH . G 6 HOH A 3 503 69 HOH HOH . G 6 HOH A 4 504 15 HOH HOH . G 6 HOH A 5 505 88 HOH HOH . G 6 HOH A 6 506 90 HOH HOH . G 6 HOH A 7 507 48 HOH HOH . G 6 HOH A 8 508 42 HOH HOH . G 6 HOH A 9 509 17 HOH HOH . G 6 HOH A 10 510 70 HOH HOH . G 6 HOH A 11 511 8 HOH HOH . G 6 HOH A 12 512 57 HOH HOH . G 6 HOH A 13 513 18 HOH HOH . G 6 HOH A 14 514 51 HOH HOH . G 6 HOH A 15 515 38 HOH HOH . G 6 HOH A 16 516 35 HOH HOH . G 6 HOH A 17 517 9 HOH HOH . G 6 HOH A 18 518 3 HOH HOH . G 6 HOH A 19 519 31 HOH HOH . G 6 HOH A 20 520 63 HOH HOH . G 6 HOH A 21 521 11 HOH HOH . G 6 HOH A 22 522 1 HOH HOH . G 6 HOH A 23 523 46 HOH HOH . G 6 HOH A 24 524 75 HOH HOH . G 6 HOH A 25 525 13 HOH HOH . G 6 HOH A 26 526 74 HOH HOH . G 6 HOH A 27 527 36 HOH HOH . G 6 HOH A 28 528 59 HOH HOH . G 6 HOH A 29 529 12 HOH HOH . G 6 HOH A 30 530 66 HOH HOH . G 6 HOH A 31 531 25 HOH HOH . G 6 HOH A 32 532 20 HOH HOH . G 6 HOH A 33 533 33 HOH HOH . G 6 HOH A 34 534 32 HOH HOH . G 6 HOH A 35 535 92 HOH HOH . G 6 HOH A 36 536 79 HOH HOH . G 6 HOH A 37 537 44 HOH HOH . G 6 HOH A 38 538 27 HOH HOH . G 6 HOH A 39 539 91 HOH HOH . G 6 HOH A 40 540 60 HOH HOH . G 6 HOH A 41 541 61 HOH HOH . G 6 HOH A 42 542 21 HOH HOH . G 6 HOH A 43 543 89 HOH HOH . G 6 HOH A 44 544 86 HOH HOH . G 6 HOH A 45 545 40 HOH HOH . H 6 HOH B 1 101 67 HOH HOH . H 6 HOH B 2 102 4 HOH HOH . H 6 HOH B 3 103 73 HOH HOH . H 6 HOH B 4 104 39 HOH HOH . H 6 HOH B 5 105 80 HOH HOH . H 6 HOH B 6 106 2 HOH HOH . H 6 HOH B 7 107 10 HOH HOH . H 6 HOH B 8 108 16 HOH HOH . H 6 HOH B 9 109 85 HOH HOH . H 6 HOH B 10 110 49 HOH HOH . H 6 HOH B 11 111 65 HOH HOH . H 6 HOH B 12 112 56 HOH HOH . H 6 HOH B 13 113 93 HOH HOH . H 6 HOH B 14 114 41 HOH HOH . H 6 HOH B 15 115 47 HOH HOH . H 6 HOH B 16 116 81 HOH HOH . I 6 HOH C 1 101 68 HOH HOH . I 6 HOH C 2 102 71 HOH HOH . I 6 HOH C 3 103 78 HOH HOH . I 6 HOH C 4 104 6 HOH HOH . I 6 HOH C 5 105 87 HOH HOH . I 6 HOH C 6 106 5 HOH HOH . I 6 HOH C 7 107 7 HOH HOH . I 6 HOH C 8 108 19 HOH HOH . I 6 HOH C 9 109 83 HOH HOH . I 6 HOH C 10 110 55 HOH HOH . I 6 HOH C 11 111 95 HOH HOH . I 6 HOH C 12 112 50 HOH HOH . I 6 HOH C 13 113 94 HOH HOH . I 6 HOH C 14 114 34 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol CA _atom_site.label_atom_id CA _atom_site.label_comp_id CA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id F _atom_site.label_entity_id 5 _atom_site.Cartn_x 31.959 _atom_site.Cartn_y 10.793 _atom_site.Cartn_z 25.666 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 61.73 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id CA _atom_site.auth_comp_id CA _atom_site.auth_seq_id 403 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 22 _model_server_stats.create_model_time_ms 10 _model_server_stats.query_time_ms 1019 _model_server_stats.encode_time_ms 12 _model_server_stats.element_count 1 #