data_6U81
#
_model_server_result.job_id            S4DiHXrYkIgv6GmClYrCmQ 
_model_server_result.datetime_utc      '2025-07-03 20:46:28' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6u81 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"E","auth_seq_id":202}' 
#
_entry.id    6U81 
#
_exptl.entry_id    6U81 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              62.068 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            1,2-ETHANEDIOL 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            6U81 
_cell.length_a            71.64 
_cell.length_b            73.19 
_cell.length_c            108.07 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6U81 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        20 
_symmetry.space_group_name_Hall    'C 2c 2' 
_symmetry.space_group_name_H-M     'C 2 2 21' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    hexameric 
_pdbx_struct_assembly.oligomeric_count      6 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 3_855 -x+3,y,-z+1/2 -1 0 0 0 1 0 0 0 -1 214.92 0 54.035 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 D N N 
? 4 E N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
hydrog WATSON-CRICK hydrog1 B N3 DC 8 B DC 8 1_555 C N1 DG 10 C DG 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog2 B N4 DC 8 B DC 8 1_555 C O6 DG 10 C DG 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog3 B O2 DC 8 B DC 8 1_555 C N2 DG 10 C DG 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog4 B N3 DT 9 B DT 9 1_555 C N1 DA 9 C DA 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog5 B O4 DT 9 B DT 9 1_555 C N6 DA 9 C DA 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog6 B N1 DA 10 B DA 10 1_555 C N3 DT 8 C DT 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog7 B N6 DA 10 B DA 10 1_555 C O4 DT 8 C DT 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog8 B N1 DA 11 B DA 11 1_555 C N3 DT 7 C DT 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog9 B N6 DA 11 B DA 11 1_555 C O4 DT 7 C DT 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog10 B N3 DT 12 B DT 12 1_555 C N1 DA 6 C DA 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog11 B O4 DT 12 B DT 12 1_555 C N6 DA 6 C DA 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog12 B N3 DC 13 B DC 13 1_555 C N1 DG 5 C DG 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog13 B N4 DC 13 B DC 13 1_555 C O6 DG 5 C DG 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog14 B O2 DC 13 B DC 13 1_555 C N2 DG 5 C DG 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog15 B N1 DA 14 B DA 14 1_555 C N3 DT 4 C DT 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog16 B N6 DA 14 B DA 14 1_555 C O4 DT 4 C DT 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog17 B N1 DA 15 B DA 15 1_555 C N3 DT 3 C DT 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog18 B N6 DA 15 B DA 15 1_555 C O4 DT 3 C DT 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog19 B N3 DC 16 B DC 16 1_555 C N1 DG 2 C DG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog20 B N4 DC 16 B DC 16 1_555 C O6 DG 2 C DG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog21 B O2 DC 16 B DC 16 1_555 C N2 DG 2 C DG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog22 B N1 DA 17 B DA 17 1_555 C N3 DT 1 C DT 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog23 B N6 DA 17 B DA 17 1_555 C O4 DT 1 C DT 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
#
_chem_comp.formula           'C2 H6 O2' 
_chem_comp.formula_weight    62.068 
_chem_comp.id                EDO 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              1,2-ETHANEDIOL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'ETHYLENE GLYCOL' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 EDO sing 232 n n 
C1 C2 EDO sing 233 n n 
C1 H11 EDO sing 234 n n 
C1 H12 EDO sing 235 n n 
O1 HO1 EDO sing 236 n n 
C2 O2 EDO sing 237 n n 
C2 H21 EDO sing 238 n n 
C2 H22 EDO sing 239 n n 
O2 HO2 EDO sing 240 n n 
#
_atom_sites.entry_id                     6U81 
_atom_sites.fract_transf_matrix[1][1]    0.013959 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.013663 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.009253 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
D 4 EDO A 1 201 201 EDO EDO . 
E 4 EDO A 1 202 202 EDO EDO . 
F 5 HOH A 1 301 53 HOH HOH . 
F 5 HOH A 2 302 46 HOH HOH . 
F 5 HOH A 3 303 1 HOH HOH . 
F 5 HOH A 4 304 36 HOH HOH . 
F 5 HOH A 5 305 45 HOH HOH . 
F 5 HOH A 6 306 48 HOH HOH . 
F 5 HOH A 7 307 62 HOH HOH . 
F 5 HOH A 8 308 7 HOH HOH . 
F 5 HOH A 9 309 4 HOH HOH . 
F 5 HOH A 10 310 2 HOH HOH . 
F 5 HOH A 11 311 56 HOH HOH . 
F 5 HOH A 12 312 13 HOH HOH . 
F 5 HOH A 13 313 10 HOH HOH . 
F 5 HOH A 14 314 12 HOH HOH . 
F 5 HOH A 15 315 5 HOH HOH . 
F 5 HOH A 16 316 51 HOH HOH . 
F 5 HOH A 17 317 14 HOH HOH . 
F 5 HOH A 18 318 61 HOH HOH . 
F 5 HOH A 19 319 54 HOH HOH . 
F 5 HOH A 20 320 3 HOH HOH . 
F 5 HOH A 21 321 11 HOH HOH . 
F 5 HOH A 22 322 6 HOH HOH . 
F 5 HOH A 23 323 38 HOH HOH . 
F 5 HOH A 24 324 8 HOH HOH . 
F 5 HOH A 25 325 27 HOH HOH . 
F 5 HOH A 26 326 43 HOH HOH . 
F 5 HOH A 27 327 63 HOH HOH . 
F 5 HOH A 28 328 59 HOH HOH . 
F 5 HOH A 29 329 58 HOH HOH . 
F 5 HOH A 30 330 16 HOH HOH . 
F 5 HOH A 31 331 47 HOH HOH . 
F 5 HOH A 32 332 15 HOH HOH . 
F 5 HOH A 33 333 42 HOH HOH . 
F 5 HOH A 34 334 52 HOH HOH . 
F 5 HOH A 35 335 17 HOH HOH . 
F 5 HOH A 36 336 18 HOH HOH . 
G 5 HOH B 1 101 55 HOH HOH . 
G 5 HOH B 2 102 19 HOH HOH . 
G 5 HOH B 3 103 50 HOH HOH . 
G 5 HOH B 4 104 21 HOH HOH . 
G 5 HOH B 5 105 60 HOH HOH . 
G 5 HOH B 6 106 20 HOH HOH . 
G 5 HOH B 7 107 24 HOH HOH . 
G 5 HOH B 8 108 23 HOH HOH . 
G 5 HOH B 9 109 22 HOH HOH . 
G 5 HOH B 10 110 9 HOH HOH . 
G 5 HOH B 11 111 26 HOH HOH . 
G 5 HOH B 12 112 25 HOH HOH . 
G 5 HOH B 13 113 64 HOH HOH . 
G 5 HOH B 14 114 28 HOH HOH . 
H 5 HOH C 1 101 31 HOH HOH . 
H 5 HOH C 2 102 37 HOH HOH . 
H 5 HOH C 3 103 29 HOH HOH . 
H 5 HOH C 4 104 32 HOH HOH . 
H 5 HOH C 5 105 30 HOH HOH . 
H 5 HOH C 6 106 49 HOH HOH . 
H 5 HOH C 7 107 39 HOH HOH . 
H 5 HOH C 8 108 41 HOH HOH . 
H 5 HOH C 9 109 33 HOH HOH . 
H 5 HOH C 10 110 65 HOH HOH . 
H 5 HOH C 11 111 44 HOH HOH . 
H 5 HOH C 12 112 40 HOH HOH . 
H 5 HOH C 13 113 34 HOH HOH . 
H 5 HOH C 14 114 35 HOH HOH . 
H 5 HOH C 15 115 57 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 EDO . . . E 4 90.548 26.034 -1.333 1 28.28 ? C1 EDO 202 A 1 
HETATM 2 O O1 EDO . . . E 4 89.158 26.291 -1.086 1 27.7 ? O1 EDO 202 A 1 
HETATM 3 C C2 EDO . . . E 4 91.314 25.914 -0.016 1 28.77 ? C2 EDO 202 A 1 
HETATM 4 O O2 EDO . . . E 4 92.578 25.273 -0.221 1 28.8 ? O2 EDO 202 A 1 
HETATM 5 H H11 EDO . . . E 4 90.97 26.846 -1.929 1 33.93 ? H11 EDO 202 A 1 
HETATM 6 H H12 EDO . . . E 4 90.654 25.109 -1.904 1 33.93 ? H12 EDO 202 A 1 
HETATM 7 H HO1 EDO . . . E 4 88.69 26.372 -1.928 1 33.24 ? HO1 EDO 202 A 1 
HETATM 8 H H21 EDO . . . E 4 90.723 25.337 0.698 1 34.53 ? H21 EDO 202 A 1 
HETATM 9 H H22 EDO . . . E 4 91.473 26.909 0.406 1 34.53 ? H22 EDO 202 A 1 
HETATM 10 H HO2 EDO . . . E 4 93.108 25.34 0.585 1 34.56 ? HO2 EDO 202 A 1 
#
_model_server_stats.io_time_ms              48 
_model_server_stats.parse_time_ms           14 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           355 
_model_server_stats.encode_time_ms          22 
_model_server_stats.element_count           10 
#