data_6U8I # _model_server_result.job_id FrRhUTKUdsnVZa_HYS_HLA _model_server_result.datetime_utc '2024-10-19 03:41:56' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6u8i # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":101}' # _entry.id 6U8I # _exptl.entry_id 6U8I _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 16.023 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'AMINO GROUP' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6U8I _cell.length_a 69.775 _cell.length_b 69.775 _cell.length_c 32.15 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6U8I _symmetry.cell_setting ? _symmetry.Int_Tables_number 75 _symmetry.space_group_name_Hall 'P 4' _symmetry.space_group_name_H-M 'P 4' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 B C ACE 1 B ACE 0 1_555 B N TRP 2 B TRP 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? covale ? covale2 B CH3 ACE 1 B ACE 0 1_555 B SG CYS 6 B CYS 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.765 ? covale ? covale3 B C LYS 7 B LYS 6 1_555 B N ALY 8 B ALY 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale4 B C ALY 8 B ALY 7 1_555 B N TYR 9 B TYR 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale5 B C HIS 13 B HIS 12 1_555 C N NH2 . B NH2 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.43 ? # _chem_comp.formula 'H2 N' _chem_comp.formula_weight 16.023 _chem_comp.id NH2 _chem_comp.mon_nstd_flag . _chem_comp.name 'AMINO GROUP' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N HN1 NH2 sing 271 n n N HN2 NH2 sing 272 n n # _atom_sites.entry_id 6U8I _atom_sites.fract_transf_matrix[1][1] 0.014332 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014332 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.031104 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 NH2 B 1 101 13 NH2 NH2 . D 4 HOH A 1 501 21 HOH HOH . D 4 HOH A 2 502 2 HOH HOH . D 4 HOH A 3 503 1 HOH HOH . D 4 HOH A 4 504 20 HOH HOH . D 4 HOH A 5 505 16 HOH HOH . D 4 HOH A 6 506 6 HOH HOH . D 4 HOH A 7 507 41 HOH HOH . D 4 HOH A 8 508 49 HOH HOH . D 4 HOH A 9 509 64 HOH HOH . D 4 HOH A 10 510 23 HOH HOH . D 4 HOH A 11 511 26 HOH HOH . D 4 HOH A 12 512 9 HOH HOH . D 4 HOH A 13 513 4 HOH HOH . D 4 HOH A 14 514 13 HOH HOH . D 4 HOH A 15 515 17 HOH HOH . D 4 HOH A 16 516 22 HOH HOH . D 4 HOH A 17 517 3 HOH HOH . D 4 HOH A 18 518 7 HOH HOH . D 4 HOH A 19 519 24 HOH HOH . D 4 HOH A 20 520 59 HOH HOH . D 4 HOH A 21 521 28 HOH HOH . D 4 HOH A 22 522 10 HOH HOH . D 4 HOH A 23 523 32 HOH HOH . D 4 HOH A 24 524 48 HOH HOH . D 4 HOH A 25 525 18 HOH HOH . D 4 HOH A 26 526 27 HOH HOH . D 4 HOH A 27 527 68 HOH HOH . D 4 HOH A 28 528 69 HOH HOH . D 4 HOH A 29 529 43 HOH HOH . D 4 HOH A 30 530 15 HOH HOH . D 4 HOH A 31 531 52 HOH HOH . D 4 HOH A 32 532 61 HOH HOH . D 4 HOH A 33 533 11 HOH HOH . D 4 HOH A 34 534 8 HOH HOH . D 4 HOH A 35 535 12 HOH HOH . D 4 HOH A 36 536 53 HOH HOH . D 4 HOH A 37 537 29 HOH HOH . D 4 HOH A 38 538 33 HOH HOH . D 4 HOH A 39 539 58 HOH HOH . D 4 HOH A 40 540 51 HOH HOH . D 4 HOH A 41 541 63 HOH HOH . D 4 HOH A 42 542 67 HOH HOH . D 4 HOH A 43 543 38 HOH HOH . D 4 HOH A 44 544 19 HOH HOH . D 4 HOH A 45 545 25 HOH HOH . D 4 HOH A 46 546 50 HOH HOH . D 4 HOH A 47 547 42 HOH HOH . D 4 HOH A 48 548 37 HOH HOH . D 4 HOH A 49 549 62 HOH HOH . E 4 HOH B 1 201 47 HOH HOH . E 4 HOH B 2 202 70 HOH HOH . E 4 HOH B 3 203 40 HOH HOH . E 4 HOH B 4 204 31 HOH HOH . E 4 HOH B 5 205 56 HOH HOH . E 4 HOH B 6 206 46 HOH HOH . E 4 HOH B 7 207 36 HOH HOH . E 4 HOH B 8 208 30 HOH HOH . E 4 HOH B 9 209 57 HOH HOH . E 4 HOH B 10 210 55 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol N _atom_site.label_atom_id N _atom_site.label_comp_id NH2 _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id C _atom_site.label_entity_id 3 _atom_site.Cartn_x 14.31 _atom_site.Cartn_y 8.965 _atom_site.Cartn_z 8.436 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 31.9 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id N _atom_site.auth_comp_id NH2 _atom_site.auth_seq_id 101 _atom_site.auth_asym_id B _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 0 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 1 _model_server_stats.query_time_ms 307 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 1 #