data_6U8M # _model_server_result.job_id m3NONDAcbUrFnIe3NI7fQg _model_server_result.datetime_utc '2024-10-19 03:44:45' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6u8m # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":101}' # _entry.id 6U8M # _exptl.entry_id 6U8M _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 16.023 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'AMINO GROUP' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6U8M _cell.length_a 61.834 _cell.length_b 72.616 _cell.length_c 86.056 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6U8M _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall 'P 2ac 2ab' _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 C C ACE 1 C ACE 0 1_555 C N TRP 2 C TRP 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale2 C CH3 ACE 1 C ACE 0 1_555 C SG CYS 18 C CYS 17 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.772 ? covale ? covale3 C C TRP 2 C TRP 1 1_555 C N ALY 3 C ALY 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale4 C C ALY 3 C ALY 2 1_555 C N LYS 4 C LYS 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.341 ? covale ? covale5 C C GLY 9 C GLY 8 1_555 C N ALY 10 C ALY 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale6 C C ALY 10 C ALY 9 1_555 C N ILE 11 C ILE 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? covale ? covale7 C C CYS 18 C CYS 17 1_555 D N NH2 . C NH2 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.43 ? # _chem_comp.formula 'H2 N' _chem_comp.formula_weight 16.023 _chem_comp.id NH2 _chem_comp.mon_nstd_flag . _chem_comp.name 'AMINO GROUP' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N HN1 NH2 sing 271 n n N HN2 NH2 sing 272 n n # _atom_sites.entry_id 6U8M _atom_sites.fract_transf_matrix[1][1] 0.016172 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013771 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.01162 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 3 NH2 C 1 101 18 NH2 NH2 . E 4 HOH A 1 201 189 HOH HOH . E 4 HOH A 2 202 213 HOH HOH . E 4 HOH A 3 203 157 HOH HOH . E 4 HOH A 4 204 153 HOH HOH . E 4 HOH A 5 205 3 HOH HOH . E 4 HOH A 6 206 171 HOH HOH . E 4 HOH A 7 207 99 HOH HOH . E 4 HOH A 8 208 141 HOH HOH . E 4 HOH A 9 209 57 HOH HOH . E 4 HOH A 10 210 198 HOH HOH . E 4 HOH A 11 211 212 HOH HOH . E 4 HOH A 12 212 214 HOH HOH . E 4 HOH A 13 213 22 HOH HOH . E 4 HOH A 14 214 88 HOH HOH . E 4 HOH A 15 215 143 HOH HOH . E 4 HOH A 16 216 63 HOH HOH . E 4 HOH A 17 217 170 HOH HOH . E 4 HOH A 18 218 5 HOH HOH . E 4 HOH A 19 219 136 HOH HOH . E 4 HOH A 20 220 127 HOH HOH . E 4 HOH A 21 221 174 HOH HOH . E 4 HOH A 22 222 34 HOH HOH . E 4 HOH A 23 223 195 HOH HOH . E 4 HOH A 24 224 117 HOH HOH . E 4 HOH A 25 225 223 HOH HOH . E 4 HOH A 26 226 35 HOH HOH . E 4 HOH A 27 227 50 HOH HOH . E 4 HOH A 28 228 193 HOH HOH . E 4 HOH A 29 229 19 HOH HOH . E 4 HOH A 30 230 94 HOH HOH . E 4 HOH A 31 231 196 HOH HOH . E 4 HOH A 32 232 179 HOH HOH . E 4 HOH A 33 233 12 HOH HOH . E 4 HOH A 34 234 192 HOH HOH . E 4 HOH A 35 235 66 HOH HOH . E 4 HOH A 36 236 89 HOH HOH . E 4 HOH A 37 237 184 HOH HOH . E 4 HOH A 38 238 120 HOH HOH . E 4 HOH A 39 239 77 HOH HOH . E 4 HOH A 40 240 113 HOH HOH . E 4 HOH A 41 241 106 HOH HOH . E 4 HOH A 42 242 39 HOH HOH . E 4 HOH A 43 243 144 HOH HOH . E 4 HOH A 44 244 222 HOH HOH . E 4 HOH A 45 245 172 HOH HOH . E 4 HOH A 46 246 56 HOH HOH . E 4 HOH A 47 247 11 HOH HOH . E 4 HOH A 48 248 186 HOH HOH . E 4 HOH A 49 249 43 HOH HOH . E 4 HOH A 50 250 208 HOH HOH . E 4 HOH A 51 251 61 HOH HOH . E 4 HOH A 52 252 130 HOH HOH . E 4 HOH A 53 253 147 HOH HOH . E 4 HOH A 54 254 10 HOH HOH . E 4 HOH A 55 255 104 HOH HOH . E 4 HOH A 56 256 8 HOH HOH . E 4 HOH A 57 257 45 HOH HOH . E 4 HOH A 58 258 125 HOH HOH . E 4 HOH A 59 259 146 HOH HOH . E 4 HOH A 60 260 138 HOH HOH . E 4 HOH A 61 261 133 HOH HOH . E 4 HOH A 62 262 48 HOH HOH . E 4 HOH A 63 263 103 HOH HOH . E 4 HOH A 64 264 205 HOH HOH . E 4 HOH A 65 265 6 HOH HOH . E 4 HOH A 66 266 152 HOH HOH . E 4 HOH A 67 267 135 HOH HOH . E 4 HOH A 68 268 121 HOH HOH . E 4 HOH A 69 269 160 HOH HOH . E 4 HOH A 70 270 116 HOH HOH . E 4 HOH A 71 271 78 HOH HOH . E 4 HOH A 72 272 60 HOH HOH . E 4 HOH A 73 273 73 HOH HOH . E 4 HOH A 74 274 148 HOH HOH . E 4 HOH A 75 275 123 HOH HOH . E 4 HOH A 76 276 145 HOH HOH . E 4 HOH A 77 277 177 HOH HOH . E 4 HOH A 78 278 155 HOH HOH . E 4 HOH A 79 279 227 HOH HOH . E 4 HOH A 80 280 110 HOH HOH . E 4 HOH A 81 281 162 HOH HOH . E 4 HOH A 82 282 197 HOH HOH . E 4 HOH A 83 283 51 HOH HOH . E 4 HOH A 84 284 175 HOH HOH . E 4 HOH A 85 285 221 HOH HOH . E 4 HOH A 86 286 115 HOH HOH . E 4 HOH A 87 287 199 HOH HOH . E 4 HOH A 88 288 126 HOH HOH . E 4 HOH A 89 289 194 HOH HOH . E 4 HOH A 90 290 44 HOH HOH . E 4 HOH A 91 291 211 HOH HOH . E 4 HOH A 92 292 156 HOH HOH . E 4 HOH A 93 293 102 HOH HOH . E 4 HOH A 94 294 159 HOH HOH . E 4 HOH A 95 295 217 HOH HOH . E 4 HOH A 96 296 70 HOH HOH . E 4 HOH A 97 297 216 HOH HOH . E 4 HOH A 98 298 191 HOH HOH . E 4 HOH A 99 299 200 HOH HOH . F 4 HOH B 1 201 81 HOH HOH . F 4 HOH B 2 202 201 HOH HOH . F 4 HOH B 3 203 224 HOH HOH . F 4 HOH B 4 204 219 HOH HOH . F 4 HOH B 5 205 161 HOH HOH . F 4 HOH B 6 206 2 HOH HOH . F 4 HOH B 7 207 92 HOH HOH . F 4 HOH B 8 208 210 HOH HOH . F 4 HOH B 9 209 79 HOH HOH . F 4 HOH B 10 210 122 HOH HOH . F 4 HOH B 11 211 15 HOH HOH . F 4 HOH B 12 212 65 HOH HOH . F 4 HOH B 13 213 100 HOH HOH . F 4 HOH B 14 214 59 HOH HOH . F 4 HOH B 15 215 23 HOH HOH . F 4 HOH B 16 216 64 HOH HOH . F 4 HOH B 17 217 75 HOH HOH . F 4 HOH B 18 218 69 HOH HOH . F 4 HOH B 19 219 53 HOH HOH . F 4 HOH B 20 220 91 HOH HOH . F 4 HOH B 21 221 173 HOH HOH . F 4 HOH B 22 222 215 HOH HOH . F 4 HOH B 23 223 93 HOH HOH . F 4 HOH B 24 224 36 HOH HOH . F 4 HOH B 25 225 32 HOH HOH . F 4 HOH B 26 226 26 HOH HOH . F 4 HOH B 27 227 55 HOH HOH . F 4 HOH B 28 228 38 HOH HOH . F 4 HOH B 29 229 17 HOH HOH . F 4 HOH B 30 230 31 HOH HOH . F 4 HOH B 31 231 29 HOH HOH . F 4 HOH B 32 232 139 HOH HOH . F 4 HOH B 33 233 87 HOH HOH . F 4 HOH B 34 234 188 HOH HOH . F 4 HOH B 35 235 71 HOH HOH . F 4 HOH B 36 236 49 HOH HOH . F 4 HOH B 37 237 13 HOH HOH . F 4 HOH B 38 238 14 HOH HOH . F 4 HOH B 39 239 58 HOH HOH . F 4 HOH B 40 240 20 HOH HOH . F 4 HOH B 41 241 37 HOH HOH . F 4 HOH B 42 242 62 HOH HOH . F 4 HOH B 43 243 98 HOH HOH . F 4 HOH B 44 244 1 HOH HOH . F 4 HOH B 45 245 185 HOH HOH . F 4 HOH B 46 246 52 HOH HOH . F 4 HOH B 47 247 149 HOH HOH . F 4 HOH B 48 248 140 HOH HOH . F 4 HOH B 49 249 27 HOH HOH . F 4 HOH B 50 250 4 HOH HOH . F 4 HOH B 51 251 142 HOH HOH . F 4 HOH B 52 252 176 HOH HOH . F 4 HOH B 53 253 25 HOH HOH . F 4 HOH B 54 254 96 HOH HOH . F 4 HOH B 55 255 114 HOH HOH . F 4 HOH B 56 256 111 HOH HOH . F 4 HOH B 57 257 124 HOH HOH . F 4 HOH B 58 258 46 HOH HOH . F 4 HOH B 59 259 40 HOH HOH . F 4 HOH B 60 260 18 HOH HOH . F 4 HOH B 61 261 202 HOH HOH . F 4 HOH B 62 262 16 HOH HOH . F 4 HOH B 63 263 207 HOH HOH . F 4 HOH B 64 264 72 HOH HOH . F 4 HOH B 65 265 134 HOH HOH . F 4 HOH B 66 266 54 HOH HOH . F 4 HOH B 67 267 118 HOH HOH . F 4 HOH B 68 268 21 HOH HOH . F 4 HOH B 69 269 83 HOH HOH . F 4 HOH B 70 270 204 HOH HOH . F 4 HOH B 71 271 112 HOH HOH . F 4 HOH B 72 272 95 HOH HOH . F 4 HOH B 73 273 181 HOH HOH . F 4 HOH B 74 274 9 HOH HOH . F 4 HOH B 75 275 163 HOH HOH . F 4 HOH B 76 276 90 HOH HOH . F 4 HOH B 77 277 84 HOH HOH . F 4 HOH B 78 278 190 HOH HOH . F 4 HOH B 79 279 132 HOH HOH . F 4 HOH B 80 280 220 HOH HOH . F 4 HOH B 81 281 180 HOH HOH . F 4 HOH B 82 282 33 HOH HOH . F 4 HOH B 83 283 218 HOH HOH . F 4 HOH B 84 284 137 HOH HOH . F 4 HOH B 85 285 183 HOH HOH . F 4 HOH B 86 286 101 HOH HOH . F 4 HOH B 87 287 167 HOH HOH . F 4 HOH B 88 288 187 HOH HOH . F 4 HOH B 89 289 105 HOH HOH . F 4 HOH B 90 290 128 HOH HOH . F 4 HOH B 91 291 182 HOH HOH . F 4 HOH B 92 292 67 HOH HOH . F 4 HOH B 93 293 209 HOH HOH . F 4 HOH B 94 294 203 HOH HOH . F 4 HOH B 95 295 85 HOH HOH . F 4 HOH B 96 296 165 HOH HOH . F 4 HOH B 97 297 131 HOH HOH . F 4 HOH B 98 298 225 HOH HOH . F 4 HOH B 99 299 86 HOH HOH . F 4 HOH B 100 300 206 HOH HOH . F 4 HOH B 101 301 76 HOH HOH . G 4 HOH C 1 201 107 HOH HOH . G 4 HOH C 2 202 228 HOH HOH . G 4 HOH C 3 203 226 HOH HOH . G 4 HOH C 4 204 42 HOH HOH . G 4 HOH C 5 205 80 HOH HOH . G 4 HOH C 6 206 68 HOH HOH . G 4 HOH C 7 207 30 HOH HOH . G 4 HOH C 8 208 109 HOH HOH . G 4 HOH C 9 209 164 HOH HOH . G 4 HOH C 10 210 108 HOH HOH . G 4 HOH C 11 211 97 HOH HOH . G 4 HOH C 12 212 178 HOH HOH . G 4 HOH C 13 213 129 HOH HOH . G 4 HOH C 14 214 166 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol N _atom_site.label_atom_id N _atom_site.label_comp_id NH2 _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id D _atom_site.label_entity_id 3 _atom_site.Cartn_x -49.519 _atom_site.Cartn_y 5.133 _atom_site.Cartn_z -1.179 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 44.3 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id N _atom_site.auth_comp_id NH2 _atom_site.auth_seq_id 101 _atom_site.auth_asym_id C _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 76 _model_server_stats.parse_time_ms 26 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 309 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 1 #