data_6U8N # _model_server_result.job_id Dscjplf2kW1dXpbx7mJOvw _model_server_result.datetime_utc '2024-10-20 20:42:07' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6u8n # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"W","auth_seq_id":603}' # _entry.id 6U8N # _exptl.entry_id 6U8N _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 348.206 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'INOSINIC ACID' _entity.pdbx_number_of_molecules 8 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6U8N _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 6U8N _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details hexadecameric _pdbx_struct_assembly.oligomeric_count 16 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA,SA,TA,UA,VA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 S N N ? 3 W N N ? 3 AA N N ? 3 EA N N ? 3 IA N N ? 3 MA N N ? 3 QA N N ? 3 UA N N # _chem_comp.formula 'C10 H13 N4 O8 P' _chem_comp.formula_weight 348.206 _chem_comp.id IMP _chem_comp.mon_nstd_flag n _chem_comp.name 'INOSINIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag P O1P IMP doub 220 n n P O2P IMP sing 221 n n P O3P IMP sing 222 n n P O5' IMP sing 223 n n O2P HOP2 IMP sing 224 n n O3P HOP3 IMP sing 225 n n O5' C5' IMP sing 226 n n C5' C4' IMP sing 227 n n C5' "H5'1" IMP sing 228 n n C5' "H5'2" IMP sing 229 n n C4' O4' IMP sing 230 n n C4' C3' IMP sing 231 n n C4' H4' IMP sing 232 n n O4' C1' IMP sing 233 n n C3' O3' IMP sing 234 n n C3' C2' IMP sing 235 n n C3' H3' IMP sing 236 n n O3' HO3' IMP sing 237 n n C2' O2' IMP sing 238 n n C2' C1' IMP sing 239 n n C2' H2' IMP sing 240 n n O2' HO2' IMP sing 241 n n C1' N9 IMP sing 242 n n C1' H1' IMP sing 243 n n N9 C8 IMP sing 244 n y N9 C4 IMP sing 245 n y C8 N7 IMP doub 246 n y C8 H8 IMP sing 247 n n N7 C5 IMP sing 248 n y C5 C6 IMP sing 249 n n C5 C4 IMP doub 250 n y C6 O6 IMP doub 251 n n C6 N1 IMP sing 252 n n N1 C2 IMP sing 253 n n N1 HN1 IMP sing 254 n n C2 N3 IMP doub 255 n n C2 H2 IMP sing 256 n n N3 C4 IMP sing 257 n n # _atom_sites.entry_id 6U8N _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code Q 2 ATP A 1 601 517 ATP ATP . R 2 ATP A 1 602 518 ATP ATP . S 3 IMP A 1 603 603 IMP IMP . T 4 NAD A 1 604 701 NAD NAD . U 2 ATP B 1 601 517 ATP ATP . V 2 ATP B 1 602 518 ATP ATP . W 3 IMP B 1 603 603 IMP IMP . X 4 NAD B 1 604 701 NAD NAD . Y 2 ATP C 1 601 517 ATP ATP . Z 2 ATP C 1 602 518 ATP ATP . AA 3 IMP C 1 603 603 IMP IMP . BA 4 NAD C 1 604 701 NAD NAD . CA 2 ATP D 1 601 517 ATP ATP . DA 2 ATP D 1 602 518 ATP ATP . EA 3 IMP D 1 603 603 IMP IMP . FA 4 NAD D 1 604 701 NAD NAD . GA 2 ATP E 1 601 517 ATP ATP . HA 2 ATP E 1 602 518 ATP ATP . IA 3 IMP E 1 603 603 IMP IMP . JA 4 NAD E 1 604 701 NAD NAD . KA 2 ATP F 1 601 517 ATP ATP . LA 2 ATP F 1 602 518 ATP ATP . MA 3 IMP F 1 603 603 IMP IMP . NA 4 NAD F 1 604 701 NAD NAD . OA 2 ATP G 1 601 517 ATP ATP . PA 2 ATP G 1 602 518 ATP ATP . QA 3 IMP G 1 603 603 IMP IMP . RA 4 NAD G 1 604 701 NAD NAD . SA 2 ATP H 1 601 517 ATP ATP . TA 2 ATP H 1 602 518 ATP ATP . UA 3 IMP H 1 603 603 IMP IMP . VA 4 NAD H 1 604 701 NAD NAD . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P P IMP . . . W 3 187.569 176.917 139.109 1 117.81 ? P IMP 603 B 1 HETATM 2 O O1P IMP . . . W 3 186.303 176.612 138.369 1 117.81 ? O1P IMP 603 B 1 HETATM 3 O O2P IMP . . . W 3 188.4 175.794 139.645 1 117.81 ? O2P IMP 603 B 1 HETATM 4 O O3P IMP . . . W 3 187.237 177.836 140.241 1 117.81 ? O3P IMP 603 B 1 HETATM 5 O O5' IMP . . . W 3 188.503 177.728 138.125 1 117.81 ? O5' IMP 603 B 1 HETATM 6 C C5' IMP . . . W 3 189.078 178.951 138.539 1 117.81 ? C5' IMP 603 B 1 HETATM 7 C C4' IMP . . . W 3 189.198 179.922 137.403 1 117.81 ? C4' IMP 603 B 1 HETATM 8 O O4' IMP . . . W 3 188.154 180.895 137.526 1 117.81 ? O4' IMP 603 B 1 HETATM 9 C C3' IMP . . . W 3 190.473 180.732 137.394 1 117.81 ? C3' IMP 603 B 1 HETATM 10 O O3' IMP . . . W 3 191.511 180.079 136.697 1 117.81 ? O3' IMP 603 B 1 HETATM 11 C C2' IMP . . . W 3 190.071 182.042 136.742 1 117.81 ? C2' IMP 603 B 1 HETATM 12 O O2' IMP . . . W 3 190.233 181.95 135.344 1 117.81 ? O2' IMP 603 B 1 HETATM 13 C C1' IMP . . . W 3 188.582 182.131 137.041 1 117.81 ? C1' IMP 603 B 1 HETATM 14 N N9 IMP . . . W 3 188.289 183.107 138.084 1 117.81 ? N9 IMP 603 B 1 HETATM 15 C C8 IMP . . . W 3 189.079 183.382 139.11 1 117.81 ? C8 IMP 603 B 1 HETATM 16 N N7 IMP . . . W 3 188.461 184.291 139.865 1 117.81 ? N7 IMP 603 B 1 HETATM 17 C C5 IMP . . . W 3 187.31 184.54 139.297 1 117.81 ? C5 IMP 603 B 1 HETATM 18 C C6 IMP . . . W 3 186.211 185.475 139.695 1 117.81 ? C6 IMP 603 B 1 HETATM 19 O O6 IMP . . . W 3 186.35 186.111 140.668 1 117.81 ? O6 IMP 603 B 1 HETATM 20 N N1 IMP . . . W 3 185.041 185.582 138.91 1 117.81 ? N1 IMP 603 B 1 HETATM 21 C C2 IMP . . . W 3 184.929 184.774 137.742 1 117.81 ? C2 IMP 603 B 1 HETATM 22 N N3 IMP . . . W 3 186.004 183.888 137.351 1 117.81 ? N3 IMP 603 B 1 HETATM 23 C C4 IMP . . . W 3 187.199 183.801 138.191 1 117.81 ? C4 IMP 603 B 1 # _model_server_stats.io_time_ms 15 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 40 _model_server_stats.query_time_ms 289 _model_server_stats.encode_time_ms 18 _model_server_stats.element_count 23 #