data_6U8N # _model_server_result.job_id yZnu2htu0W4eWdUQ4MQFvQ _model_server_result.datetime_utc '2024-10-20 20:45:02' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6u8n # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"T","auth_seq_id":604}' # _entry.id 6U8N # _exptl.entry_id 6U8N _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 663.425 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description NICOTINAMIDE-ADENINE-DINUCLEOTIDE _entity.pdbx_number_of_molecules 8 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6U8N _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 6U8N _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details hexadecameric _pdbx_struct_assembly.oligomeric_count 16 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA,SA,TA,UA,VA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 T N N ? 4 X N N ? 4 BA N N ? 4 FA N N ? 4 JA N N ? 4 NA N N ? 4 RA N N ? 4 VA N N # _chem_comp.formula 'C21 H27 N7 O14 P2' _chem_comp.formula_weight 663.425 _chem_comp.id NAD _chem_comp.mon_nstd_flag . _chem_comp.name NICOTINAMIDE-ADENINE-DINUCLEOTIDE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A NAD doub 322 n n PA O2A NAD sing 323 n n PA O5B NAD sing 324 n n PA O3 NAD sing 325 n n O2A HOA2 NAD sing 326 n n O5B C5B NAD sing 327 n n C5B C4B NAD sing 328 n n C5B H51A NAD sing 329 n n C5B H52A NAD sing 330 n n C4B O4B NAD sing 331 n n C4B C3B NAD sing 332 n n C4B H4B NAD sing 333 n n O4B C1B NAD sing 334 n n C3B O3B NAD sing 335 n n C3B C2B NAD sing 336 n n C3B H3B NAD sing 337 n n O3B HO3A NAD sing 338 n n C2B O2B NAD sing 339 n n C2B C1B NAD sing 340 n n C2B H2B NAD sing 341 n n O2B HO2A NAD sing 342 n n C1B N9A NAD sing 343 n n C1B H1B NAD sing 344 n n N9A C8A NAD sing 345 n y N9A C4A NAD sing 346 n y C8A N7A NAD doub 347 n y C8A H8A NAD sing 348 n n N7A C5A NAD sing 349 n y C5A C6A NAD sing 350 n y C5A C4A NAD doub 351 n y C6A N6A NAD sing 352 n n C6A N1A NAD doub 353 n y N6A H61A NAD sing 354 n n N6A H62A NAD sing 355 n n N1A C2A NAD sing 356 n y C2A N3A NAD doub 357 n y C2A H2A NAD sing 358 n n N3A C4A NAD sing 359 n y O3 PN NAD sing 360 n n PN O1N NAD doub 361 n n PN O2N NAD sing 362 n n PN O5D NAD sing 363 n n O5D C5D NAD sing 364 n n C5D C4D NAD sing 365 n n C5D H51N NAD sing 366 n n C5D H52N NAD sing 367 n n C4D O4D NAD sing 368 n n C4D C3D NAD sing 369 n n C4D H4D NAD sing 370 n n O4D C1D NAD sing 371 n n C3D O3D NAD sing 372 n n C3D C2D NAD sing 373 n n C3D H3D NAD sing 374 n n O3D HO3N NAD sing 375 n n C2D O2D NAD sing 376 n n C2D C1D NAD sing 377 n n C2D H2D NAD sing 378 n n O2D HO2N NAD sing 379 n n C1D N1N NAD sing 380 n n C1D H1D NAD sing 381 n n N1N C2N NAD sing 382 n y N1N C6N NAD doub 383 n y C2N C3N NAD doub 384 n y C2N H2N NAD sing 385 n n C3N C7N NAD sing 386 n n C3N C4N NAD sing 387 n y C7N O7N NAD doub 388 n n C7N N7N NAD sing 389 n n N7N H71N NAD sing 390 n n N7N H72N NAD sing 391 n n C4N C5N NAD doub 392 n y C4N H4N NAD sing 393 n n C5N C6N NAD sing 394 n y C5N H5N NAD sing 395 n n C6N H6N NAD sing 396 n n # _atom_sites.entry_id 6U8N _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code Q 2 ATP A 1 601 517 ATP ATP . R 2 ATP A 1 602 518 ATP ATP . S 3 IMP A 1 603 603 IMP IMP . T 4 NAD A 1 604 701 NAD NAD . U 2 ATP B 1 601 517 ATP ATP . V 2 ATP B 1 602 518 ATP ATP . W 3 IMP B 1 603 603 IMP IMP . X 4 NAD B 1 604 701 NAD NAD . Y 2 ATP C 1 601 517 ATP ATP . Z 2 ATP C 1 602 518 ATP ATP . AA 3 IMP C 1 603 603 IMP IMP . BA 4 NAD C 1 604 701 NAD NAD . CA 2 ATP D 1 601 517 ATP ATP . DA 2 ATP D 1 602 518 ATP ATP . EA 3 IMP D 1 603 603 IMP IMP . FA 4 NAD D 1 604 701 NAD NAD . GA 2 ATP E 1 601 517 ATP ATP . HA 2 ATP E 1 602 518 ATP ATP . IA 3 IMP E 1 603 603 IMP IMP . JA 4 NAD E 1 604 701 NAD NAD . KA 2 ATP F 1 601 517 ATP ATP . LA 2 ATP F 1 602 518 ATP ATP . MA 3 IMP F 1 603 603 IMP IMP . NA 4 NAD F 1 604 701 NAD NAD . OA 2 ATP G 1 601 517 ATP ATP . PA 2 ATP G 1 602 518 ATP ATP . QA 3 IMP G 1 603 603 IMP IMP . RA 4 NAD G 1 604 701 NAD NAD . SA 2 ATP H 1 601 517 ATP ATP . TA 2 ATP H 1 602 518 ATP ATP . UA 3 IMP H 1 603 603 IMP IMP . VA 4 NAD H 1 604 701 NAD NAD . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA NAD . . . T 4 193.89 146.013 135.458 1 131.79 ? PA NAD 604 A 1 HETATM 2 O O1A NAD . . . T 4 193.501 145.393 134.143 1 131.79 ? O1A NAD 604 A 1 HETATM 3 O O2A NAD . . . T 4 193.921 144.937 136.515 1 131.79 ? O2A NAD 604 A 1 HETATM 4 O O5B NAD . . . T 4 195.363 146.739 135.344 1 131.79 ? O5B NAD 604 A 1 HETATM 5 C C5B NAD . . . T 4 195.412 148.087 135.003 1 131.79 ? C5B NAD 604 A 1 HETATM 6 C C4B NAD . . . T 4 196.107 148.187 133.669 1 131.79 ? C4B NAD 604 A 1 HETATM 7 O O4B NAD . . . T 4 197.038 146.887 133.419 1 131.79 ? O4B NAD 604 A 1 HETATM 8 C C3B NAD . . . T 4 195.198 148.188 132.745 1 131.79 ? C3B NAD 604 A 1 HETATM 9 O O3B NAD . . . T 4 195.434 149.349 131.845 1 131.79 ? O3B NAD 604 A 1 HETATM 10 C C2B NAD . . . T 4 195.425 146.891 131.962 1 131.79 ? C2B NAD 604 A 1 HETATM 11 O O2B NAD . . . T 4 195.147 147.072 130.654 1 131.79 ? O2B NAD 604 A 1 HETATM 12 C C1B NAD . . . T 4 196.917 146.642 132.15 1 131.79 ? C1B NAD 604 A 1 HETATM 13 N N9A NAD . . . T 4 197.194 145.237 131.826 1 131.79 ? N9A NAD 604 A 1 HETATM 14 C C8A NAD . . . T 4 196.533 144.149 131.463 1 131.79 ? C8A NAD 604 A 1 HETATM 15 N N7A NAD . . . T 4 197.435 143.179 131.324 1 131.79 ? N7A NAD 604 A 1 HETATM 16 C C5A NAD . . . T 4 198.636 143.688 131.598 1 131.79 ? C5A NAD 604 A 1 HETATM 17 C C6A NAD . . . T 4 199.884 143.129 131.634 1 131.79 ? C6A NAD 604 A 1 HETATM 18 N N6A NAD . . . T 4 200.472 141.839 131.355 1 131.79 ? N6A NAD 604 A 1 HETATM 19 N N1A NAD . . . T 4 200.929 143.869 131.934 1 131.79 ? N1A NAD 604 A 1 HETATM 20 C C2A NAD . . . T 4 200.767 145.17 132.249 1 131.79 ? C2A NAD 604 A 1 HETATM 21 N N3A NAD . . . T 4 199.539 145.717 132.235 1 131.79 ? N3A NAD 604 A 1 HETATM 22 C C4A NAD . . . T 4 198.487 144.969 131.911 1 131.79 ? C4A NAD 604 A 1 HETATM 23 O O3 NAD . . . T 4 192.75 147.118 135.851 1 131.79 ? O3 NAD 604 A 1 HETATM 24 P PN NAD . . . T 4 191.218 146.683 135.52 1 131.79 ? PN NAD 604 A 1 HETATM 25 O O1N NAD . . . T 4 191.117 145.204 135.747 1 131.79 ? O1N NAD 604 A 1 HETATM 26 O O2N NAD . . . T 4 190.958 146.972 134.073 1 131.79 ? O2N NAD 604 A 1 HETATM 27 O O5D NAD . . . T 4 190.127 147.453 136.478 1 131.79 ? O5D NAD 604 A 1 HETATM 28 C C5D NAD . . . T 4 189.731 146.821 137.66 1 131.79 ? C5D NAD 604 A 1 HETATM 29 C C4D NAD . . . T 4 188.253 146.466 137.647 1 131.79 ? C4D NAD 604 A 1 HETATM 30 O O4D NAD . . . T 4 187.301 147.655 137.123 1 131.79 ? O4D NAD 604 A 1 HETATM 31 C C3D NAD . . . T 4 188.011 145.488 136.833 1 131.79 ? C3D NAD 604 A 1 HETATM 32 O O3D NAD . . . T 4 188.21 144.19 137.526 1 131.79 ? O3D NAD 604 A 1 HETATM 33 C C2D NAD . . . T 4 186.521 145.637 136.538 1 131.79 ? C2D NAD 604 A 1 HETATM 34 O O2D NAD . . . T 4 185.872 144.741 137.306 1 131.79 ? O2D NAD 604 A 1 HETATM 35 C C1D NAD . . . T 4 186.154 147.076 136.941 1 131.79 ? C1D NAD 604 A 1 HETATM 36 N N1N NAD . . . T 4 185.455 147.712 135.814 1 131.79 ? N1N NAD 604 A 1 HETATM 37 C C2N NAD . . . T 4 184.441 147.075 135.183 1 131.79 ? C2N NAD 604 A 1 HETATM 38 C C3N NAD . . . T 4 183.792 147.676 134.112 1 131.79 ? C3N NAD 604 A 1 HETATM 39 C C7N NAD . . . T 4 182.638 146.94 133.4 1 131.79 ? C7N NAD 604 A 1 HETATM 40 O O7N NAD . . . T 4 182.216 145.959 133.89 1 131.79 ? O7N NAD 604 A 1 HETATM 41 N N7N NAD . . . T 4 182.045 147.359 132.129 1 131.79 ? N7N NAD 604 A 1 HETATM 42 C C4N NAD . . . T 4 184.199 148.901 133.722 1 131.79 ? C4N NAD 604 A 1 HETATM 43 C C5N NAD . . . T 4 185.212 149.539 134.357 1 131.79 ? C5N NAD 604 A 1 HETATM 44 C C6N NAD . . . T 4 185.86 148.925 135.404 1 131.79 ? C6N NAD 604 A 1 # _model_server_stats.io_time_ms 16 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 54 _model_server_stats.query_time_ms 270 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 44 #