data_6U8R
#
_model_server_result.job_id            X8pIXeHSRsFkieUCCTuJHA 
_model_server_result.datetime_utc      '2024-11-21 17:36:37' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6u8r 
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_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"Y","auth_seq_id":601}' 
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_entry.id    6U8R 
#
_exptl.entry_id    6U8R 
_exptl.method      'ELECTRON MICROSCOPY' 
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_entity.details                     ? 
_entity.formula_weight              507.181 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "ADENOSINE-5'-TRIPHOSPHATE" 
_entity.pdbx_number_of_molecules    16 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
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_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            6U8R 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
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_symmetry.entry_id                 6U8R 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
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_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    hexadecameric 
_pdbx_struct_assembly.oligomeric_count      16 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
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_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA,SA,TA,UA,VA 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 S N N 
? 4 T N N 
? 4 U N N 
? 4 V N N 
? 4 Y N N 
? 4 Z N N 
? 4 CA N N 
? 4 DA N N 
? 4 IA N N 
? 4 JA N N 
? 4 KA N N 
? 4 LA N N 
? 4 OA N N 
? 4 PA N N 
? 4 SA N N 
? 4 TA N N 
#
_chem_comp.formula           'C10 H16 N5 O13 P3' 
_chem_comp.formula_weight    507.181 
_chem_comp.id                ATP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              "ADENOSINE-5'-TRIPHOSPHATE" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
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loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PG O1G ATP doub 70 n n 
PG O2G ATP sing 71 n n 
PG O3G ATP sing 72 n n 
PG O3B ATP sing 73 n n 
O2G HOG2 ATP sing 74 n n 
O3G HOG3 ATP sing 75 n n 
PB O1B ATP doub 76 n n 
PB O2B ATP sing 77 n n 
PB O3B ATP sing 78 n n 
PB O3A ATP sing 79 n n 
O2B HOB2 ATP sing 80 n n 
PA O1A ATP doub 81 n n 
PA O2A ATP sing 82 n n 
PA O3A ATP sing 83 n n 
PA O5' ATP sing 84 n n 
O2A HOA2 ATP sing 85 n n 
O5' C5' ATP sing 86 n n 
C5' C4' ATP sing 87 n n 
C5' "H5'1" ATP sing 88 n n 
C5' "H5'2" ATP sing 89 n n 
C4' O4' ATP sing 90 n n 
C4' C3' ATP sing 91 n n 
C4' H4' ATP sing 92 n n 
O4' C1' ATP sing 93 n n 
C3' O3' ATP sing 94 n n 
C3' C2' ATP sing 95 n n 
C3' H3' ATP sing 96 n n 
O3' HO3' ATP sing 97 n n 
C2' O2' ATP sing 98 n n 
C2' C1' ATP sing 99 n n 
C2' H2' ATP sing 100 n n 
O2' HO2' ATP sing 101 n n 
C1' N9 ATP sing 102 n n 
C1' H1' ATP sing 103 n n 
N9 C8 ATP sing 104 n y 
N9 C4 ATP sing 105 n y 
C8 N7 ATP doub 106 n y 
C8 H8 ATP sing 107 n n 
N7 C5 ATP sing 108 n y 
C5 C6 ATP sing 109 n y 
C5 C4 ATP doub 110 n y 
C6 N6 ATP sing 111 n n 
C6 N1 ATP doub 112 n y 
N6 HN61 ATP sing 113 n n 
N6 HN62 ATP sing 114 n n 
N1 C2 ATP sing 115 n y 
C2 N3 ATP doub 116 n y 
C2 H2 ATP sing 117 n n 
N3 C4 ATP sing 118 n y 
#
_atom_sites.entry_id                     6U8R 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
Q 2 IMP A 1 601 603 IMP IMP . 
R 3 NAD A 1 602 701 NAD NAD . 
S 4 ATP A 1 603 903 ATP ATP . 
T 4 ATP A 1 604 904 ATP ATP . 
U 4 ATP B 1 601 517 ATP ATP . 
V 4 ATP B 1 602 518 ATP ATP . 
W 2 IMP B 1 603 603 IMP IMP . 
X 3 NAD B 1 604 701 NAD NAD . 
Y 4 ATP C 1 601 517 ATP ATP . 
Z 4 ATP C 1 602 518 ATP ATP . 
AA 2 IMP C 1 603 603 IMP IMP . 
BA 3 NAD C 1 604 701 NAD NAD . 
CA 4 ATP D 1 601 517 ATP ATP . 
DA 4 ATP D 1 602 518 ATP ATP . 
EA 2 IMP D 1 603 603 IMP IMP . 
FA 3 NAD D 1 604 701 NAD NAD . 
GA 2 IMP E 1 601 603 IMP IMP . 
HA 3 NAD E 1 602 701 NAD NAD . 
IA 4 ATP E 1 603 903 ATP ATP . 
JA 4 ATP E 1 604 904 ATP ATP . 
KA 4 ATP F 1 601 517 ATP ATP . 
LA 4 ATP F 1 602 518 ATP ATP . 
MA 2 IMP F 1 603 603 IMP IMP . 
NA 3 NAD F 1 604 701 NAD NAD . 
OA 4 ATP G 1 601 517 ATP ATP . 
PA 4 ATP G 1 602 518 ATP ATP . 
QA 2 IMP G 1 603 603 IMP IMP . 
RA 3 NAD G 1 604 701 NAD NAD . 
SA 4 ATP H 1 601 517 ATP ATP . 
TA 4 ATP H 1 602 518 ATP ATP . 
UA 2 IMP H 1 603 603 IMP IMP . 
VA 3 NAD H 1 604 701 NAD NAD . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PG ATP . . . Y 4 133.587 206.615 168.48 1 207 ? PG ATP 601 C 1 
HETATM 2 O O1G ATP . . . Y 4 134.527 205.409 168.459 1 207 ? O1G ATP 601 C 1 
HETATM 3 O O2G ATP . . . Y 4 132.883 206.734 167.158 1 207 ? O2G ATP 601 C 1 
HETATM 4 O O3G ATP . . . Y 4 132.566 206.463 169.576 1 207 ? O3G ATP 601 C 1 
HETATM 5 P PB ATP . . . Y 4 133.725 209.419 168.897 1 207 ? PB ATP 601 C 1 
HETATM 6 O O1B ATP . . . Y 4 134.139 210.362 167.784 1 207 ? O1B ATP 601 C 1 
HETATM 7 O O2B ATP . . . Y 4 134.108 209.995 170.214 1 207 ? O2B ATP 601 C 1 
HETATM 8 O O3B ATP . . . Y 4 134.452 207.981 168.711 1 207 ? O3B ATP 601 C 1 
HETATM 9 P PA ATP . . . Y 4 131.225 209.623 170.281 1 207 ? PA ATP 601 C 1 
HETATM 10 O O1A ATP . . . Y 4 131.775 208.77 171.395 1 207 ? O1A ATP 601 C 1 
HETATM 11 O O2A ATP . . . Y 4 129.74 209.337 170.103 1 207 ? O2A ATP 601 C 1 
HETATM 12 O O3A ATP . . . Y 4 132.084 209.249 168.917 1 207 ? O3A ATP 601 C 1 
HETATM 13 O O5' ATP . . . Y 4 131.396 211.268 170.674 1 207 ? O5' ATP 601 C 1 
HETATM 14 C C5' ATP . . . Y 4 131.522 212.211 169.584 1 207 ? C5' ATP 601 C 1 
HETATM 15 C C4' ATP . . . Y 4 130.258 212.542 169.106 1 207 ? C4' ATP 601 C 1 
HETATM 16 O O4' ATP . . . Y 4 129.331 212.706 170.267 1 207 ? O4' ATP 601 C 1 
HETATM 17 C C3' ATP . . . Y 4 130.314 213.981 168.412 1 207 ? C3' ATP 601 C 1 
HETATM 18 O O3' ATP . . . Y 4 129.381 214.026 167.236 1 207 ? O3' ATP 601 C 1 
HETATM 19 C C2' ATP . . . Y 4 129.973 214.821 169.274 1 207 ? C2' ATP 601 C 1 
HETATM 20 O O2' ATP . . . Y 4 128.987 215.744 168.677 1 207 ? O2' ATP 601 C 1 
HETATM 21 C C1' ATP . . . Y 4 129.154 214.004 170.436 1 207 ? C1' ATP 601 C 1 
HETATM 22 N N9 ATP . . . Y 4 129.49 214.345 171.756 1 207 ? N9 ATP 601 C 1 
HETATM 23 C C8 ATP . . . Y 4 130.38 214.047 172.686 1 207 ? C8 ATP 601 C 1 
HETATM 24 N N7 ATP . . . Y 4 130.026 214.751 173.777 1 207 ? N7 ATP 601 C 1 
HETATM 25 C C5 ATP . . . Y 4 128.907 215.436 173.51 1 207 ? C5 ATP 601 C 1 
HETATM 26 C C6 ATP . . . Y 4 128.154 216.314 174.26 1 207 ? C6 ATP 601 C 1 
HETATM 27 N N6 ATP . . . Y 4 128.049 216.918 175.559 1 207 ? N6 ATP 601 C 1 
HETATM 28 N N1 ATP . . . Y 4 127.095 216.871 173.725 1 207 ? N1 ATP 601 C 1 
HETATM 29 C C2 ATP . . . Y 4 126.765 216.591 172.45 1 207 ? C2 ATP 601 C 1 
HETATM 30 N N3 ATP . . . Y 4 127.51 215.765 171.699 1 207 ? N3 ATP 601 C 1 
HETATM 31 C C4 ATP . . . Y 4 128.59 215.203 172.242 1 207 ? C4 ATP 601 C 1 
#
_model_server_stats.io_time_ms              22 
_model_server_stats.parse_time_ms           17 
_model_server_stats.create_model_time_ms    99 
_model_server_stats.query_time_ms           898 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           31 
#