data_6U8R # _model_server_result.job_id QM5Gvp7oKz8hxkLQ2hUIWQ _model_server_result.datetime_utc '2024-10-20 20:43:12' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6u8r # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"R","auth_seq_id":602}' # _entry.id 6U8R # _exptl.entry_id 6U8R _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 663.425 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description NICOTINAMIDE-ADENINE-DINUCLEOTIDE _entity.pdbx_number_of_molecules 8 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6U8R _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 6U8R _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details hexadecameric _pdbx_struct_assembly.oligomeric_count 16 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA,SA,TA,UA,VA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 R N N ? 3 X N N ? 3 BA N N ? 3 FA N N ? 3 HA N N ? 3 NA N N ? 3 RA N N ? 3 VA N N # _chem_comp.formula 'C21 H27 N7 O14 P2' _chem_comp.formula_weight 663.425 _chem_comp.id NAD _chem_comp.mon_nstd_flag . _chem_comp.name NICOTINAMIDE-ADENINE-DINUCLEOTIDE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A NAD doub 322 n n PA O2A NAD sing 323 n n PA O5B NAD sing 324 n n PA O3 NAD sing 325 n n O2A HOA2 NAD sing 326 n n O5B C5B NAD sing 327 n n C5B C4B NAD sing 328 n n C5B H51A NAD sing 329 n n C5B H52A NAD sing 330 n n C4B O4B NAD sing 331 n n C4B C3B NAD sing 332 n n C4B H4B NAD sing 333 n n O4B C1B NAD sing 334 n n C3B O3B NAD sing 335 n n C3B C2B NAD sing 336 n n C3B H3B NAD sing 337 n n O3B HO3A NAD sing 338 n n C2B O2B NAD sing 339 n n C2B C1B NAD sing 340 n n C2B H2B NAD sing 341 n n O2B HO2A NAD sing 342 n n C1B N9A NAD sing 343 n n C1B H1B NAD sing 344 n n N9A C8A NAD sing 345 n y N9A C4A NAD sing 346 n y C8A N7A NAD doub 347 n y C8A H8A NAD sing 348 n n N7A C5A NAD sing 349 n y C5A C6A NAD sing 350 n y C5A C4A NAD doub 351 n y C6A N6A NAD sing 352 n n C6A N1A NAD doub 353 n y N6A H61A NAD sing 354 n n N6A H62A NAD sing 355 n n N1A C2A NAD sing 356 n y C2A N3A NAD doub 357 n y C2A H2A NAD sing 358 n n N3A C4A NAD sing 359 n y O3 PN NAD sing 360 n n PN O1N NAD doub 361 n n PN O2N NAD sing 362 n n PN O5D NAD sing 363 n n O5D C5D NAD sing 364 n n C5D C4D NAD sing 365 n n C5D H51N NAD sing 366 n n C5D H52N NAD sing 367 n n C4D O4D NAD sing 368 n n C4D C3D NAD sing 369 n n C4D H4D NAD sing 370 n n O4D C1D NAD sing 371 n n C3D O3D NAD sing 372 n n C3D C2D NAD sing 373 n n C3D H3D NAD sing 374 n n O3D HO3N NAD sing 375 n n C2D O2D NAD sing 376 n n C2D C1D NAD sing 377 n n C2D H2D NAD sing 378 n n O2D HO2N NAD sing 379 n n C1D N1N NAD sing 380 n n C1D H1D NAD sing 381 n n N1N C2N NAD sing 382 n y N1N C6N NAD doub 383 n y C2N C3N NAD doub 384 n y C2N H2N NAD sing 385 n n C3N C7N NAD sing 386 n n C3N C4N NAD sing 387 n y C7N O7N NAD doub 388 n n C7N N7N NAD sing 389 n n N7N H71N NAD sing 390 n n N7N H72N NAD sing 391 n n C4N C5N NAD doub 392 n y C4N H4N NAD sing 393 n n C5N C6N NAD sing 394 n y C5N H5N NAD sing 395 n n C6N H6N NAD sing 396 n n # _atom_sites.entry_id 6U8R _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code Q 2 IMP A 1 601 603 IMP IMP . R 3 NAD A 1 602 701 NAD NAD . S 4 ATP A 1 603 903 ATP ATP . T 4 ATP A 1 604 904 ATP ATP . U 4 ATP B 1 601 517 ATP ATP . V 4 ATP B 1 602 518 ATP ATP . W 2 IMP B 1 603 603 IMP IMP . X 3 NAD B 1 604 701 NAD NAD . Y 4 ATP C 1 601 517 ATP ATP . Z 4 ATP C 1 602 518 ATP ATP . AA 2 IMP C 1 603 603 IMP IMP . BA 3 NAD C 1 604 701 NAD NAD . CA 4 ATP D 1 601 517 ATP ATP . DA 4 ATP D 1 602 518 ATP ATP . EA 2 IMP D 1 603 603 IMP IMP . FA 3 NAD D 1 604 701 NAD NAD . GA 2 IMP E 1 601 603 IMP IMP . HA 3 NAD E 1 602 701 NAD NAD . IA 4 ATP E 1 603 903 ATP ATP . JA 4 ATP E 1 604 904 ATP ATP . KA 4 ATP F 1 601 517 ATP ATP . LA 4 ATP F 1 602 518 ATP ATP . MA 2 IMP F 1 603 603 IMP IMP . NA 3 NAD F 1 604 701 NAD NAD . OA 4 ATP G 1 601 517 ATP ATP . PA 4 ATP G 1 602 518 ATP ATP . QA 2 IMP G 1 603 603 IMP IMP . RA 3 NAD G 1 604 701 NAD NAD . SA 4 ATP H 1 601 517 ATP ATP . TA 4 ATP H 1 602 518 ATP ATP . UA 2 IMP H 1 603 603 IMP IMP . VA 3 NAD H 1 604 701 NAD NAD . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA NAD . . . R 3 165.41 136.233 197.353 1 123.02 ? PA NAD 602 A 1 HETATM 2 O O1A NAD . . . R 3 166.749 136.769 197.756 1 123.02 ? O1A NAD 602 A 1 HETATM 3 O O2A NAD . . . R 3 165.526 135.438 196.084 1 123.02 ? O2A NAD 602 A 1 HETATM 4 O O5B NAD . . . R 3 164.784 135.274 198.512 1 123.02 ? O5B NAD 602 A 1 HETATM 5 C C5B NAD . . . R 3 163.841 134.326 198.104 1 123.02 ? C5B NAD 602 A 1 HETATM 6 C C4B NAD . . . R 3 162.421 134.79 198.392 1 123.02 ? C4B NAD 602 A 1 HETATM 7 O O4B NAD . . . R 3 161.516 133.573 198.939 1 123.02 ? O4B NAD 602 A 1 HETATM 8 C C3B NAD . . . R 3 162.376 135.661 199.344 1 123.02 ? C3B NAD 602 A 1 HETATM 9 O O3B NAD . . . R 3 161.075 136.373 199.259 1 123.02 ? O3B NAD 602 A 1 HETATM 10 C C2B NAD . . . R 3 162.391 134.821 200.624 1 123.02 ? C2B NAD 602 A 1 HETATM 11 O O2B NAD . . . R 3 161.699 135.479 201.572 1 123.02 ? O2B NAD 602 A 1 HETATM 12 C C1B NAD . . . R 3 161.686 133.518 200.231 1 123.02 ? C1B NAD 602 A 1 HETATM 13 N N9A NAD . . . R 3 162.554 132.377 200.55 1 123.02 ? N9A NAD 602 A 1 HETATM 14 C C8A NAD . . . R 3 163.819 132.124 200.853 1 123.02 ? C8A NAD 602 A 1 HETATM 15 N N7A NAD . . . R 3 163.92 130.804 201.012 1 123.02 ? N7A NAD 602 A 1 HETATM 16 C C5A NAD . . . R 3 162.718 130.272 200.806 1 123.02 ? C5A NAD 602 A 1 HETATM 17 C C6A NAD . . . R 3 162.275 128.986 200.832 1 123.02 ? C6A NAD 602 A 1 HETATM 18 N N6A NAD . . . R 3 162.835 127.686 201.101 1 123.02 ? N6A NAD 602 A 1 HETATM 19 N N1A NAD . . . R 3 161.011 128.715 200.587 1 123.02 ? N1A NAD 602 A 1 HETATM 20 C C2A NAD . . . R 3 160.149 129.712 200.291 1 123.02 ? C2A NAD 602 A 1 HETATM 21 N N3A NAD . . . R 3 160.585 130.985 200.255 1 123.02 ? N3A NAD 602 A 1 HETATM 22 C C4A NAD . . . R 3 161.867 131.248 200.515 1 123.02 ? C4A NAD 602 A 1 HETATM 23 O O3 NAD . . . R 3 164.412 137.493 197.109 1 123.02 ? O3 NAD 602 A 1 HETATM 24 P PN NAD . . . R 3 164.644 138.37 195.755 1 123.02 ? PN NAD 602 A 1 HETATM 25 O O1N NAD . . . R 3 163.864 139.652 195.826 1 123.02 ? O1N NAD 602 A 1 HETATM 26 O O2N NAD . . . R 3 164.186 137.555 194.576 1 123.02 ? O2N NAD 602 A 1 HETATM 27 O O5D NAD . . . R 3 166.252 138.688 195.623 1 123.02 ? O5D NAD 602 A 1 HETATM 28 C C5D NAD . . . R 3 166.958 138.016 194.625 1 123.02 ? C5D NAD 602 A 1 HETATM 29 C C4D NAD . . . R 3 168.276 138.708 194.401 1 123.02 ? C4D NAD 602 A 1 HETATM 30 O O4D NAD . . . R 3 168.018 140.27 194.133 1 123.02 ? O4D NAD 602 A 1 HETATM 31 C C3D NAD . . . R 3 168.983 138.69 195.475 1 123.02 ? C3D NAD 602 A 1 HETATM 32 O O3D NAD . . . R 3 169.719 137.401 195.518 1 123.02 ? O3D NAD 602 A 1 HETATM 33 C C2D NAD . . . R 3 169.944 139.858 195.244 1 123.02 ? C2D NAD 602 A 1 HETATM 34 O O2D NAD . . . R 3 170.917 139.467 194.399 1 123.02 ? O2D NAD 602 A 1 HETATM 35 C C1D NAD . . . R 3 169.096 140.902 194.51 1 123.02 ? C1D NAD 602 A 1 HETATM 36 N N1N NAD . . . R 3 168.722 142.002 195.402 1 123.02 ? N1N NAD 602 A 1 HETATM 37 C C2N NAD . . . R 3 169.651 142.612 196.152 1 123.02 ? C2N NAD 602 A 1 HETATM 38 C C3N NAD . . . R 3 169.234 143.624 196.979 1 123.02 ? C3N NAD 602 A 1 HETATM 39 C C7N NAD . . . R 3 170.229 144.355 197.837 1 123.02 ? C7N NAD 602 A 1 HETATM 40 O O7N NAD . . . R 3 170.685 143.858 198.799 1 123.02 ? O7N NAD 602 A 1 HETATM 41 N N7N NAD . . . R 3 170.594 145.693 197.44 1 123.02 ? N7N NAD 602 A 1 HETATM 42 C C4N NAD . . . R 3 167.95 144.001 197.041 1 123.02 ? C4N NAD 602 A 1 HETATM 43 C C5N NAD . . . R 3 167.024 143.386 196.283 1 123.02 ? C5N NAD 602 A 1 HETATM 44 C C6N NAD . . . R 3 167.428 142.365 195.452 1 123.02 ? C6N NAD 602 A 1 # _model_server_stats.io_time_ms 15 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 351 _model_server_stats.query_time_ms 260 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 44 #