data_6U8R
#
_model_server_result.job_id            Vs-KSmp1k9xtmryYtOEyKg 
_model_server_result.datetime_utc      '2024-10-20 20:38:26' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6u8r 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"RA","auth_seq_id":604}' 
#
_entry.id    6U8R 
#
_exptl.entry_id    6U8R 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              663.425 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            NICOTINAMIDE-ADENINE-DINUCLEOTIDE 
_entity.pdbx_number_of_molecules    8 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            6U8R 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6U8R 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    hexadecameric 
_pdbx_struct_assembly.oligomeric_count      16 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA,SA,TA,UA,VA 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 R N N 
? 3 X N N 
? 3 BA N N 
? 3 FA N N 
? 3 HA N N 
? 3 NA N N 
? 3 RA N N 
? 3 VA N N 
#
_chem_comp.formula           'C21 H27 N7 O14 P2' 
_chem_comp.formula_weight    663.425 
_chem_comp.id                NAD 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              NICOTINAMIDE-ADENINE-DINUCLEOTIDE 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PA O1A NAD doub 322 n n 
PA O2A NAD sing 323 n n 
PA O5B NAD sing 324 n n 
PA O3 NAD sing 325 n n 
O2A HOA2 NAD sing 326 n n 
O5B C5B NAD sing 327 n n 
C5B C4B NAD sing 328 n n 
C5B H51A NAD sing 329 n n 
C5B H52A NAD sing 330 n n 
C4B O4B NAD sing 331 n n 
C4B C3B NAD sing 332 n n 
C4B H4B NAD sing 333 n n 
O4B C1B NAD sing 334 n n 
C3B O3B NAD sing 335 n n 
C3B C2B NAD sing 336 n n 
C3B H3B NAD sing 337 n n 
O3B HO3A NAD sing 338 n n 
C2B O2B NAD sing 339 n n 
C2B C1B NAD sing 340 n n 
C2B H2B NAD sing 341 n n 
O2B HO2A NAD sing 342 n n 
C1B N9A NAD sing 343 n n 
C1B H1B NAD sing 344 n n 
N9A C8A NAD sing 345 n y 
N9A C4A NAD sing 346 n y 
C8A N7A NAD doub 347 n y 
C8A H8A NAD sing 348 n n 
N7A C5A NAD sing 349 n y 
C5A C6A NAD sing 350 n y 
C5A C4A NAD doub 351 n y 
C6A N6A NAD sing 352 n n 
C6A N1A NAD doub 353 n y 
N6A H61A NAD sing 354 n n 
N6A H62A NAD sing 355 n n 
N1A C2A NAD sing 356 n y 
C2A N3A NAD doub 357 n y 
C2A H2A NAD sing 358 n n 
N3A C4A NAD sing 359 n y 
O3 PN NAD sing 360 n n 
PN O1N NAD doub 361 n n 
PN O2N NAD sing 362 n n 
PN O5D NAD sing 363 n n 
O5D C5D NAD sing 364 n n 
C5D C4D NAD sing 365 n n 
C5D H51N NAD sing 366 n n 
C5D H52N NAD sing 367 n n 
C4D O4D NAD sing 368 n n 
C4D C3D NAD sing 369 n n 
C4D H4D NAD sing 370 n n 
O4D C1D NAD sing 371 n n 
C3D O3D NAD sing 372 n n 
C3D C2D NAD sing 373 n n 
C3D H3D NAD sing 374 n n 
O3D HO3N NAD sing 375 n n 
C2D O2D NAD sing 376 n n 
C2D C1D NAD sing 377 n n 
C2D H2D NAD sing 378 n n 
O2D HO2N NAD sing 379 n n 
C1D N1N NAD sing 380 n n 
C1D H1D NAD sing 381 n n 
N1N C2N NAD sing 382 n y 
N1N C6N NAD doub 383 n y 
C2N C3N NAD doub 384 n y 
C2N H2N NAD sing 385 n n 
C3N C7N NAD sing 386 n n 
C3N C4N NAD sing 387 n y 
C7N O7N NAD doub 388 n n 
C7N N7N NAD sing 389 n n 
N7N H71N NAD sing 390 n n 
N7N H72N NAD sing 391 n n 
C4N C5N NAD doub 392 n y 
C4N H4N NAD sing 393 n n 
C5N C6N NAD sing 394 n y 
C5N H5N NAD sing 395 n n 
C6N H6N NAD sing 396 n n 
#
_atom_sites.entry_id                     6U8R 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
Q 2 IMP A 1 601 603 IMP IMP . 
R 3 NAD A 1 602 701 NAD NAD . 
S 4 ATP A 1 603 903 ATP ATP . 
T 4 ATP A 1 604 904 ATP ATP . 
U 4 ATP B 1 601 517 ATP ATP . 
V 4 ATP B 1 602 518 ATP ATP . 
W 2 IMP B 1 603 603 IMP IMP . 
X 3 NAD B 1 604 701 NAD NAD . 
Y 4 ATP C 1 601 517 ATP ATP . 
Z 4 ATP C 1 602 518 ATP ATP . 
AA 2 IMP C 1 603 603 IMP IMP . 
BA 3 NAD C 1 604 701 NAD NAD . 
CA 4 ATP D 1 601 517 ATP ATP . 
DA 4 ATP D 1 602 518 ATP ATP . 
EA 2 IMP D 1 603 603 IMP IMP . 
FA 3 NAD D 1 604 701 NAD NAD . 
GA 2 IMP E 1 601 603 IMP IMP . 
HA 3 NAD E 1 602 701 NAD NAD . 
IA 4 ATP E 1 603 903 ATP ATP . 
JA 4 ATP E 1 604 904 ATP ATP . 
KA 4 ATP F 1 601 517 ATP ATP . 
LA 4 ATP F 1 602 518 ATP ATP . 
MA 2 IMP F 1 603 603 IMP IMP . 
NA 3 NAD F 1 604 701 NAD NAD . 
OA 4 ATP G 1 601 517 ATP ATP . 
PA 4 ATP G 1 602 518 ATP ATP . 
QA 2 IMP G 1 603 603 IMP IMP . 
RA 3 NAD G 1 604 701 NAD NAD . 
SA 4 ATP H 1 601 517 ATP ATP . 
TA 4 ATP H 1 602 518 ATP ATP . 
UA 2 IMP H 1 603 603 IMP IMP . 
VA 3 NAD H 1 604 701 NAD NAD . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PA NAD . . . RA 3 172.8 131.313 137.648 1 129.71 ? PA NAD 604 G 1 
HETATM 2 O O1A NAD . . . RA 3 172.561 131.404 136.167 1 129.71 ? O1A NAD 604 G 1 
HETATM 3 O O2A NAD . . . RA 3 171.888 130.3 138.29 1 129.71 ? O2A NAD 604 G 1 
HETATM 4 O O5B NAD . . . RA 3 174.388 130.996 137.906 1 129.71 ? O5B NAD 604 G 1 
HETATM 5 C C5B NAD . . . RA 3 175.253 132.073 137.718 1 129.71 ? C5B NAD 604 G 1 
HETATM 6 C C4B NAD . . . RA 3 176.055 131.852 136.456 1 129.71 ? C4B NAD 604 G 1 
HETATM 7 O O4B NAD . . . RA 3 175.856 130.333 135.974 1 129.71 ? O4B NAD 604 G 1 
HETATM 8 C C3B NAD . . . RA 3 175.593 132.627 135.527 1 129.71 ? C3B NAD 604 G 1 
HETATM 9 O O3B NAD . . . RA 3 176.617 133.659 135.205 1 129.71 ? O3B NAD 604 G 1 
HETATM 10 C C2B NAD . . . RA 3 175.427 131.769 134.276 1 129.71 ? C2B NAD 604 G 1 
HETATM 11 O O2B NAD . . . RA 3 176.3 132.254 133.363 1 129.71 ? O2B NAD 604 G 1 
HETATM 12 C C1B NAD . . . RA 3 175.837 130.35 134.679 1 129.71 ? C1B NAD 604 G 1 
HETATM 13 N N9A NAD . . . RA 3 174.81 129.394 134.272 1 129.71 ? N9A NAD 604 G 1 
HETATM 14 C C8A NAD . . . RA 3 173.527 129.367 133.958 1 129.71 ? C8A NAD 604 G 1 
HETATM 15 N N7A NAD . . . RA 3 173.24 128.093 133.701 1 129.71 ? N7A NAD 604 G 1 
HETATM 16 C C5A NAD . . . RA 3 174.347 127.371 133.867 1 129.71 ? C5A NAD 604 G 1 
HETATM 17 C C6A NAD . . . RA 3 174.6 126.039 133.742 1 129.71 ? C6A NAD 604 G 1 
HETATM 18 N N6A NAD . . . RA 3 173.853 124.856 133.386 1 129.71 ? N6A NAD 604 G 1 
HETATM 19 N N1A NAD . . . RA 3 175.806 125.565 133.965 1 129.71 ? N1A NAD 604 G 1 
HETATM 20 C C2A NAD . . . RA 3 176.8 126.396 134.333 1 129.71 ? C2A NAD 604 G 1 
HETATM 21 N N3A NAD . . . RA 3 176.55 127.711 134.461 1 129.71 ? N3A NAD 604 G 1 
HETATM 22 C C4A NAD . . . RA 3 175.325 128.179 134.227 1 129.71 ? C4A NAD 604 G 1 
HETATM 23 O O3 NAD . . . RA 3 172.463 132.748 138.331 1 129.71 ? O3 NAD 604 G 1 
HETATM 24 P PN NAD . . . RA 3 171.603 133.824 137.471 1 129.71 ? PN NAD 604 G 1 
HETATM 25 O O1N NAD . . . RA 3 170.406 133.129 136.879 1 129.71 ? O1N NAD 604 G 1 
HETATM 26 O O2N NAD . . . RA 3 172.52 134.334 136.402 1 129.71 ? O2N NAD 604 G 1 
HETATM 27 O O5D NAD . . . RA 3 171.103 134.992 138.508 1 129.71 ? O5D NAD 604 G 1 
HETATM 28 C C5D NAD . . . RA 3 170.964 134.558 139.827 1 129.71 ? C5D NAD 604 G 1 
HETATM 29 C C4D NAD . . . RA 3 169.557 134.801 140.336 1 129.71 ? C4D NAD 604 G 1 
HETATM 30 O O4D NAD . . . RA 3 169.253 136.381 140.314 1 129.71 ? O4D NAD 604 G 1 
HETATM 31 C C3D NAD . . . RA 3 168.664 134.204 139.597 1 129.71 ? C3D NAD 604 G 1 
HETATM 32 O O3D NAD . . . RA 3 167.873 133.278 140.452 1 129.71 ? O3D NAD 604 G 1 
HETATM 33 C C2D NAD . . . RA 3 167.738 135.29 139.02 1 129.71 ? C2D NAD 604 G 1 
HETATM 34 O O2D NAD . . . RA 3 166.448 134.966 139.254 1 129.71 ? O2D NAD 604 G 1 
HETATM 35 C C1D NAD . . . RA 3 168.08 136.573 139.786 1 129.71 ? C1D NAD 604 G 1 
HETATM 36 N N1N NAD . . . RA 3 168.181 137.715 138.874 1 129.71 ? N1N NAD 604 G 1 
HETATM 37 C C2N NAD . . . RA 3 167.087 138.198 138.265 1 129.71 ? C2N NAD 604 G 1 
HETATM 38 C C3N NAD . . . RA 3 167.252 139.27 137.42 1 129.71 ? C3N NAD 604 G 1 
HETATM 39 C C7N NAD . . . RA 3 166.068 139.865 136.705 1 129.71 ? C7N NAD 604 G 1 
HETATM 40 O O7N NAD . . . RA 3 165.217 139.153 136.318 1 129.71 ? O7N NAD 604 G 1 
HETATM 41 N N7N NAD . . . RA 3 165.997 141.299 136.502 1 129.71 ? N7N NAD 604 G 1 
HETATM 42 C C4N NAD . . . RA 3 168.457 139.816 137.2 1 129.71 ? C4N NAD 604 G 1 
HETATM 43 C C5N NAD . . . RA 3 169.54 139.332 137.829 1 129.71 ? C5N NAD 604 G 1 
HETATM 44 C C6N NAD . . . RA 3 169.392 138.257 138.672 1 129.71 ? C6N NAD 604 G 1 
#
_model_server_stats.io_time_ms              26 
_model_server_stats.parse_time_ms           52 
_model_server_stats.create_model_time_ms    66 
_model_server_stats.query_time_ms           273 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           44 
#