data_6U8S
#
_model_server_result.job_id            eXcQDETISd-TfGRTxtR9bQ 
_model_server_result.datetime_utc      '2024-10-20 20:38:33' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6u8s 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"J","auth_seq_id":602}' 
#
_entry.id    6U8S 
#
_exptl.entry_id    6U8S 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              663.425 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            NICOTINAMIDE-ADENINE-DINUCLEOTIDE 
_entity.pdbx_number_of_molecules    8 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            6U8S 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6U8S 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    octameric 
_pdbx_struct_assembly.oligomeric_count      8 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 J N N 
? 3 L N N 
? 3 N N N 
? 3 P N N 
? 3 R N N 
? 3 T N N 
? 3 V N N 
? 3 X N N 
#
_chem_comp.formula           'C21 H27 N7 O14 P2' 
_chem_comp.formula_weight    663.425 
_chem_comp.id                NAD 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              NICOTINAMIDE-ADENINE-DINUCLEOTIDE 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PA O1A NAD doub 273 n n 
PA O2A NAD sing 274 n n 
PA O5B NAD sing 275 n n 
PA O3 NAD sing 276 n n 
O2A HOA2 NAD sing 277 n n 
O5B C5B NAD sing 278 n n 
C5B C4B NAD sing 279 n n 
C5B H51A NAD sing 280 n n 
C5B H52A NAD sing 281 n n 
C4B O4B NAD sing 282 n n 
C4B C3B NAD sing 283 n n 
C4B H4B NAD sing 284 n n 
O4B C1B NAD sing 285 n n 
C3B O3B NAD sing 286 n n 
C3B C2B NAD sing 287 n n 
C3B H3B NAD sing 288 n n 
O3B HO3A NAD sing 289 n n 
C2B O2B NAD sing 290 n n 
C2B C1B NAD sing 291 n n 
C2B H2B NAD sing 292 n n 
O2B HO2A NAD sing 293 n n 
C1B N9A NAD sing 294 n n 
C1B H1B NAD sing 295 n n 
N9A C8A NAD sing 296 n y 
N9A C4A NAD sing 297 n y 
C8A N7A NAD doub 298 n y 
C8A H8A NAD sing 299 n n 
N7A C5A NAD sing 300 n y 
C5A C6A NAD sing 301 n y 
C5A C4A NAD doub 302 n y 
C6A N6A NAD sing 303 n n 
C6A N1A NAD doub 304 n y 
N6A H61A NAD sing 305 n n 
N6A H62A NAD sing 306 n n 
N1A C2A NAD sing 307 n y 
C2A N3A NAD doub 308 n y 
C2A H2A NAD sing 309 n n 
N3A C4A NAD sing 310 n y 
O3 PN NAD sing 311 n n 
PN O1N NAD doub 312 n n 
PN O2N NAD sing 313 n n 
PN O5D NAD sing 314 n n 
O5D C5D NAD sing 315 n n 
C5D C4D NAD sing 316 n n 
C5D H51N NAD sing 317 n n 
C5D H52N NAD sing 318 n n 
C4D O4D NAD sing 319 n n 
C4D C3D NAD sing 320 n n 
C4D H4D NAD sing 321 n n 
O4D C1D NAD sing 322 n n 
C3D O3D NAD sing 323 n n 
C3D C2D NAD sing 324 n n 
C3D H3D NAD sing 325 n n 
O3D HO3N NAD sing 326 n n 
C2D O2D NAD sing 327 n n 
C2D C1D NAD sing 328 n n 
C2D H2D NAD sing 329 n n 
O2D HO2N NAD sing 330 n n 
C1D N1N NAD sing 331 n n 
C1D H1D NAD sing 332 n n 
N1N C2N NAD sing 333 n y 
N1N C6N NAD doub 334 n y 
C2N C3N NAD doub 335 n y 
C2N H2N NAD sing 336 n n 
C3N C7N NAD sing 337 n n 
C3N C4N NAD sing 338 n y 
C7N O7N NAD doub 339 n n 
C7N N7N NAD sing 340 n n 
N7N H71N NAD sing 341 n n 
N7N H72N NAD sing 342 n n 
C4N C5N NAD doub 343 n y 
C4N H4N NAD sing 344 n n 
C5N C6N NAD sing 345 n y 
C5N H5N NAD sing 346 n n 
C6N H6N NAD sing 347 n n 
#
_atom_sites.entry_id                     6U8S 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
I 2 IMP A 1 601 603 IMP IMP . 
J 3 NAD A 1 602 701 NAD NAD . 
K 2 IMP B 1 601 603 IMP IMP . 
L 3 NAD B 1 602 701 NAD NAD . 
M 2 IMP C 1 601 603 IMP IMP . 
N 3 NAD C 1 602 701 NAD NAD . 
O 2 IMP D 1 601 603 IMP IMP . 
P 3 NAD D 1 602 701 NAD NAD . 
Q 2 IMP E 1 601 603 IMP IMP . 
R 3 NAD E 1 602 701 NAD NAD . 
S 2 IMP F 1 601 603 IMP IMP . 
T 3 NAD F 1 602 701 NAD NAD . 
U 2 IMP G 1 601 603 IMP IMP . 
V 3 NAD G 1 602 701 NAD NAD . 
W 2 IMP H 1 601 603 IMP IMP . 
X 3 NAD H 1 602 701 NAD NAD . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PA NAD . . . J 3 200.496 154.236 141.515 1 165.68 ? PA NAD 602 A 1 
HETATM 2 O O1A NAD . . . J 3 201.345 155.367 142.037 1 165.68 ? O1A NAD 602 A 1 
HETATM 3 O O2A NAD . . . J 3 201.213 153.527 140.39 1 165.68 ? O2A NAD 602 A 1 
HETATM 4 O O5B NAD . . . J 3 200.16 153.184 142.738 1 165.68 ? O5B NAD 602 A 1 
HETATM 5 C C5B NAD . . . J 3 199.417 152.041 142.422 1 165.68 ? C5B NAD 602 A 1 
HETATM 6 C C4B NAD . . . J 3 199.12 151.244 143.679 1 165.68 ? C4B NAD 602 A 1 
HETATM 7 O O4B NAD . . . J 3 200.485 150.558 144.208 1 165.68 ? O4B NAD 602 A 1 
HETATM 8 C C3B NAD . . . J 3 198.654 152.033 144.607 1 165.68 ? C3B NAD 602 A 1 
HETATM 9 O O3B NAD . . . J 3 197.312 151.55 145.056 1 165.68 ? O3B NAD 602 A 1 
HETATM 10 C C2B NAD . . . J 3 199.64 151.977 145.786 1 165.68 ? C2B NAD 602 A 1 
HETATM 11 O O2B NAD . . . J 3 198.972 151.684 146.931 1 165.68 ? O2B NAD 602 A 1 
HETATM 12 C C1B NAD . . . J 3 200.654 150.867 145.462 1 165.68 ? C1B NAD 602 A 1 
HETATM 13 N N9A NAD . . . J 3 202.009 151.406 145.667 1 165.68 ? N9A NAD 602 A 1 
HETATM 14 C C8A NAD . . . J 3 202.592 152.587 145.829 1 165.68 ? C8A NAD 602 A 1 
HETATM 15 N N7A NAD . . . J 3 203.897 152.36 145.972 1 165.68 ? N7A NAD 602 A 1 
HETATM 16 C C5A NAD . . . J 3 204.103 151.038 145.899 1 165.68 ? C5A NAD 602 A 1 
HETATM 17 C C6A NAD . . . J 3 205.241 150.277 145.978 1 165.68 ? C6A NAD 602 A 1 
HETATM 18 N N6A NAD . . . J 3 206.656 150.511 146.172 1 165.68 ? N6A NAD 602 A 1 
HETATM 19 N N1A NAD . . . J 3 205.169 148.964 145.875 1 165.68 ? N1A NAD 602 A 1 
HETATM 20 C C2A NAD . . . J 3 203.972 148.36 145.682 1 165.68 ? C2A NAD 602 A 1 
HETATM 21 N N3A NAD . . . J 3 202.849 149.106 145.6 1 165.68 ? N3A NAD 602 A 1 
HETATM 22 C C4A NAD . . . J 3 202.924 150.439 145.709 1 165.68 ? C4A NAD 602 A 1 
HETATM 23 O O3 NAD . . . J 3 199.071 154.841 140.968 1 165.68 ? O3 NAD 602 A 1 
HETATM 24 P PN NAD . . . J 3 198.013 155.603 141.966 1 165.68 ? PN NAD 602 A 1 
HETATM 25 O O1N NAD . . . J 3 198.715 155.98 143.247 1 165.68 ? O1N NAD 602 A 1 
HETATM 26 O O2N NAD . . . J 3 196.85 154.692 142.262 1 165.68 ? O2N NAD 602 A 1 
HETATM 27 O O5D NAD . . . J 3 197.489 156.953 141.186 1 165.68 ? O5D NAD 602 A 1 
HETATM 28 C C5D NAD . . . J 3 198.119 157.247 139.974 1 165.68 ? C5D NAD 602 A 1 
HETATM 29 C C4D NAD . . . J 3 197.834 158.688 139.626 1 165.68 ? C4D NAD 602 A 1 
HETATM 30 O O4D NAD . . . J 3 196.242 158.915 139.687 1 165.68 ? O4D NAD 602 A 1 
HETATM 31 C C3D NAD . . . J 3 198.362 159.465 140.527 1 165.68 ? C3D NAD 602 A 1 
HETATM 32 O O3D NAD . . . J 3 199.615 160.071 139.991 1 165.68 ? O3D NAD 602 A 1 
HETATM 33 C C2D NAD . . . J 3 197.333 160.578 140.788 1 165.68 ? C2D NAD 602 A 1 
HETATM 34 O O2D NAD . . . J 3 197.793 161.749 140.284 1 165.68 ? O2D NAD 602 A 1 
HETATM 35 C C1D NAD . . . J 3 196.06 160.154 140.034 1 165.68 ? C1D NAD 602 A 1 
HETATM 36 N N1N NAD . . . J 3 194.888 160.244 140.921 1 165.68 ? N1N NAD 602 A 1 
HETATM 37 C C2N NAD . . . J 3 194.553 161.427 141.476 1 165.68 ? C2N NAD 602 A 1 
HETATM 38 C C3N NAD . . . J 3 193.448 161.492 142.307 1 165.68 ? C3N NAD 602 A 1 
HETATM 39 C C7N NAD . . . J 3 193.032 162.817 142.924 1 165.68 ? C7N NAD 602 A 1 
HETATM 40 O O7N NAD . . . J 3 193.801 163.484 143.517 1 165.68 ? O7N NAD 602 A 1 
HETATM 41 N N7N NAD . . . J 3 191.668 163.273 142.743 1 165.68 ? N7N NAD 602 A 1 
HETATM 42 C C4N NAD . . . J 3 192.706 160.39 142.555 1 165.68 ? C4N NAD 602 A 1 
HETATM 43 C C5N NAD . . . J 3 193.048 159.206 141.999 1 165.68 ? C5N NAD 602 A 1 
HETATM 44 C C6N NAD . . . J 3 194.157 159.137 141.171 1 165.68 ? C6N NAD 602 A 1 
#
_model_server_stats.io_time_ms              13 
_model_server_stats.parse_time_ms           7 
_model_server_stats.create_model_time_ms    44 
_model_server_stats.query_time_ms           252 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           44 
#