data_6U96 # _model_server_result.job_id XHeiYlsOjRr7aaJGO1XNlA _model_server_result.datetime_utc '2025-03-05 02:38:38' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6u96 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"M","auth_seq_id":401}' # _entry.id 6U96 # _exptl.entry_id 6U96 _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 427.201 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-5'-DIPHOSPHATE" _entity.pdbx_number_of_molecules 5 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6U96 _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 6U96 _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details decameric _pdbx_struct_assembly.oligomeric_count 10 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 K N N ? 3 L N N ? 3 M N N ? 3 N N N ? 3 O N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C GLU 74 A GLU 72 1_555 A N HIC 75 A HIC 73 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale2 A C HIC 75 A HIC 73 1_555 A N GLY 76 A GLY 74 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.323 ? covale ? covale3 B C GLU 74 B GLU 72 1_555 B N HIC 75 B HIC 73 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale4 B C HIC 75 B HIC 73 1_555 B N GLY 76 B GLY 74 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.324 ? covale ? covale5 C C GLU 74 C GLU 72 1_555 C N HIC 75 C HIC 73 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale6 C C HIC 75 C HIC 73 1_555 C N GLY 76 C GLY 74 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.324 ? covale ? covale7 D C GLU 74 D GLU 72 1_555 D N HIC 75 D HIC 73 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale8 D C HIC 75 D HIC 73 1_555 D N GLY 76 D GLY 74 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.323 ? covale ? covale9 E C GLU 74 E GLU 72 1_555 E N HIC 75 E HIC 73 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale10 E C HIC 75 E HIC 73 1_555 E N GLY 76 E GLY 74 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.324 ? covale ? covale11 F N EEP 1 F EEP 1 1_555 F C TRP 7 F TRP 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.485 ? covale ? covale12 F C EEP 1 F EEP 1 1_555 F N ALA 2 F ALA 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.481 ? covale ? covale13 F C ALA 2 F ALA 2 1_555 F N ALO 3 F ALO 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.477 ? covale ? covale14 F C ALO 3 F ALO 3 1_555 F N CYS 4 F CYS 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.482 ? covale ? covale15 F C CYS 4 F CYS 4 1_555 F N HYP 5 F HYP 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.486 ? covale ? covale16 F C HYP 5 F HYP 5 1_555 F N ALA 6 F ALA 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.457 ? covale ? covale17 G N EEP 1 G EEP 1 1_555 G C TRP 7 G TRP 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.485 ? covale ? covale18 G C EEP 1 G EEP 1 1_555 G N ALA 2 G ALA 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.48 ? covale ? covale19 G C ALA 2 G ALA 2 1_555 G N ALO 3 G ALO 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.478 ? covale ? covale20 G C ALO 3 G ALO 3 1_555 G N CYS 4 G CYS 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.483 ? covale ? covale21 G C CYS 4 G CYS 4 1_555 G N HYP 5 G HYP 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.487 ? covale ? covale22 G C HYP 5 G HYP 5 1_555 G N ALA 6 G ALA 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.457 ? covale ? covale23 H N EEP 1 H EEP 1 1_555 H C TRP 7 H TRP 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.486 ? covale ? covale24 H C EEP 1 H EEP 1 1_555 H N ALA 2 H ALA 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.481 ? covale ? covale25 H C ALA 2 H ALA 2 1_555 H N ALO 3 H ALO 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.478 ? covale ? covale26 H C ALO 3 H ALO 3 1_555 H N CYS 4 H CYS 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.482 ? covale ? covale27 H C CYS 4 H CYS 4 1_555 H N HYP 5 H HYP 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.488 ? covale ? covale28 H C HYP 5 H HYP 5 1_555 H N ALA 6 H ALA 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.456 ? covale ? covale29 I N EEP 1 I EEP 1 1_555 I C TRP 7 I TRP 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.485 ? covale ? covale30 I C EEP 1 I EEP 1 1_555 I N ALA 2 I ALA 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.48 ? covale ? covale31 I C ALA 2 I ALA 2 1_555 I N ALO 3 I ALO 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.478 ? covale ? covale32 I C ALO 3 I ALO 3 1_555 I N CYS 4 I CYS 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.482 ? covale ? covale33 I C CYS 4 I CYS 4 1_555 I N HYP 5 I HYP 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.487 ? covale ? covale34 I C HYP 5 I HYP 5 1_555 I N ALA 6 I ALA 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.456 ? covale ? covale35 J N EEP 1 J EEP 1 1_555 J C TRP 7 J TRP 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.485 ? covale ? covale36 J C EEP 1 J EEP 1 1_555 J N ALA 2 J ALA 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.481 ? covale ? covale37 J C ALA 2 J ALA 2 1_555 J N ALO 3 J ALO 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.478 ? covale ? covale38 J C ALO 3 J ALO 3 1_555 J N CYS 4 J CYS 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.482 ? covale ? covale39 J C CYS 4 J CYS 4 1_555 J N HYP 5 J HYP 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.487 ? covale ? covale40 J C HYP 5 J HYP 5 1_555 J N ALA 6 J ALA 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.457 ? covale ? covale41 I SG CYS 4 I CYS 4 1_555 I CD1 TRP 7 I TRP 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.838 sing covale ? covale42 J SG CYS 4 J CYS 4 1_555 J CD1 TRP 7 J TRP 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.838 sing covale ? covale43 G SG CYS 4 G CYS 4 1_555 G CD1 TRP 7 G TRP 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.838 sing covale ? covale44 H SG CYS 4 H CYS 4 1_555 H CD1 TRP 7 H TRP 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.838 sing covale ? covale45 F SG CYS 4 F CYS 4 1_555 F CD1 TRP 7 F TRP 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.838 sing # _chem_comp.formula 'C10 H15 N5 O10 P2' _chem_comp.formula_weight 427.201 _chem_comp.id ADP _chem_comp.mon_nstd_flag n _chem_comp.name "ADENOSINE-5'-DIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 6U96 _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code K 3 ADP A 1 801 801 ADP ADP . L 3 ADP B 1 801 801 ADP ADP . M 3 ADP C 1 401 801 ADP ADP . N 3 ADP D 1 801 801 ADP ADP . O 3 ADP E 1 401 801 ADP ADP . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PB ADP . . . M 3 -16.67 7.555 28.411 1 68.48 ? PB ADP 401 C 1 HETATM 2 O O1B ADP . . . M 3 -16.09 8.71 27.646 1 68.48 ? O1B ADP 401 C 1 HETATM 3 O O2B ADP . . . M 3 -17.468 7.979 29.613 1 68.48 ? O2B ADP 401 C 1 HETATM 4 O O3B ADP . . . M 3 -15.717 6.417 28.643 1 68.48 ? O3B ADP 401 C 1 HETATM 5 P PA ADP . . . M 3 -18.665 5.686 27.857 1 68.48 ? PA ADP 401 C 1 HETATM 6 O O1A ADP . . . M 3 -20.088 6.079 27.596 1 68.48 ? O1A ADP 401 C 1 HETATM 7 O O2A ADP . . . M 3 -18.27 5.253 29.238 1 68.48 ? O2A ADP 401 C 1 HETATM 8 O O3A ADP . . . M 3 -17.757 6.929 27.417 1 68.48 ? O3A ADP 401 C 1 HETATM 9 O O5' ADP . . . M 3 -18.299 4.508 26.833 1 68.48 ? O5' ADP 401 C 1 HETATM 10 C C5' ADP . . . M 3 -17.189 4.576 25.948 1 68.48 ? C5' ADP 401 C 1 HETATM 11 C C4' ADP . . . M 3 -16.799 3.158 25.55 1 68.48 ? C4' ADP 401 C 1 HETATM 12 O O4' ADP . . . M 3 -17.858 2.244 25.804 1 68.48 ? O4' ADP 401 C 1 HETATM 13 C C3' ADP . . . M 3 -16.486 2.99 24.078 1 68.48 ? C3' ADP 401 C 1 HETATM 14 O O3' ADP . . . M 3 -15.077 3.03 23.883 1 68.48 ? O3' ADP 401 C 1 HETATM 15 C C2' ADP . . . M 3 -16.965 1.605 23.73 1 68.48 ? C2' ADP 401 C 1 HETATM 16 O O2' ADP . . . M 3 -15.819 0.789 23.512 1 68.48 ? O2' ADP 401 C 1 HETATM 17 C C1' ADP . . . M 3 -17.664 1.106 24.971 1 68.48 ? C1' ADP 401 C 1 HETATM 18 N N9 ADP . . . M 3 -18.959 0.472 24.648 1 68.48 ? N9 ADP 401 C 1 HETATM 19 C C8 ADP . . . M 3 -20.09 1.105 24.311 1 68.48 ? C8 ADP 401 C 1 HETATM 20 N N7 ADP . . . M 3 -21.093 0.222 24.091 1 68.48 ? N7 ADP 401 C 1 HETATM 21 C C5 ADP . . . M 3 -20.594 -1.003 24.292 1 68.48 ? C5 ADP 401 C 1 HETATM 22 C C6 ADP . . . M 3 -21.106 -2.379 24.23 1 68.48 ? C6 ADP 401 C 1 HETATM 23 N N6 ADP . . . M 3 -22.391 -2.623 23.897 1 68.48 ? N6 ADP 401 C 1 HETATM 24 N N1 ADP . . . M 3 -20.258 -3.382 24.513 1 68.48 ? N1 ADP 401 C 1 HETATM 25 C C2 ADP . . . M 3 -18.983 -3.148 24.843 1 68.48 ? C2 ADP 401 C 1 HETATM 26 N N3 ADP . . . M 3 -18.451 -1.924 24.919 1 68.48 ? N3 ADP 401 C 1 HETATM 27 C C4 ADP . . . M 3 -19.192 -0.833 24.658 1 68.48 ? C4 ADP 401 C 1 # _model_server_stats.io_time_ms 18 _model_server_stats.parse_time_ms 21 _model_server_stats.create_model_time_ms 18 _model_server_stats.query_time_ms 293 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 27 #