data_6U9O # _model_server_result.job_id Bx4ufJwkmOEgPAWfPN92sA _model_server_result.datetime_utc '2024-11-05 01:14:20' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6u9o # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"YA","auth_seq_id":605}' # _entry.id 6U9O # _exptl.entry_id 6U9O _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 663.425 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description NICOTINAMIDE-ADENINE-DINUCLEOTIDE _entity.pdbx_number_of_molecules 8 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6U9O _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 6U9O _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details hexadecameric _pdbx_struct_assembly.oligomeric_count 16 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA,SA,TA,UA,VA,WA,XA,YA,ZA,AB,BB,CB,DB _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 U N N ? 5 Z N N ? 5 EA N N ? 5 JA N N ? 5 OA N N ? 5 TA N N ? 5 YA N N ? 5 DB N N # _chem_comp.formula 'C21 H27 N7 O14 P2' _chem_comp.formula_weight 663.425 _chem_comp.id NAD _chem_comp.mon_nstd_flag . _chem_comp.name NICOTINAMIDE-ADENINE-DINUCLEOTIDE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A NAD doub 372 n n PA O2A NAD sing 373 n n PA O5B NAD sing 374 n n PA O3 NAD sing 375 n n O2A HOA2 NAD sing 376 n n O5B C5B NAD sing 377 n n C5B C4B NAD sing 378 n n C5B H51A NAD sing 379 n n C5B H52A NAD sing 380 n n C4B O4B NAD sing 381 n n C4B C3B NAD sing 382 n n C4B H4B NAD sing 383 n n O4B C1B NAD sing 384 n n C3B O3B NAD sing 385 n n C3B C2B NAD sing 386 n n C3B H3B NAD sing 387 n n O3B HO3A NAD sing 388 n n C2B O2B NAD sing 389 n n C2B C1B NAD sing 390 n n C2B H2B NAD sing 391 n n O2B HO2A NAD sing 392 n n C1B N9A NAD sing 393 n n C1B H1B NAD sing 394 n n N9A C8A NAD sing 395 n y N9A C4A NAD sing 396 n y C8A N7A NAD doub 397 n y C8A H8A NAD sing 398 n n N7A C5A NAD sing 399 n y C5A C6A NAD sing 400 n y C5A C4A NAD doub 401 n y C6A N6A NAD sing 402 n n C6A N1A NAD doub 403 n y N6A H61A NAD sing 404 n n N6A H62A NAD sing 405 n n N1A C2A NAD sing 406 n y C2A N3A NAD doub 407 n y C2A H2A NAD sing 408 n n N3A C4A NAD sing 409 n y O3 PN NAD sing 410 n n PN O1N NAD doub 411 n n PN O2N NAD sing 412 n n PN O5D NAD sing 413 n n O5D C5D NAD sing 414 n n C5D C4D NAD sing 415 n n C5D H51N NAD sing 416 n n C5D H52N NAD sing 417 n n C4D O4D NAD sing 418 n n C4D C3D NAD sing 419 n n C4D H4D NAD sing 420 n n O4D C1D NAD sing 421 n n C3D O3D NAD sing 422 n n C3D C2D NAD sing 423 n n C3D H3D NAD sing 424 n n O3D HO3N NAD sing 425 n n C2D O2D NAD sing 426 n n C2D C1D NAD sing 427 n n C2D H2D NAD sing 428 n n O2D HO2N NAD sing 429 n n C1D N1N NAD sing 430 n n C1D H1D NAD sing 431 n n N1N C2N NAD sing 432 n y N1N C6N NAD doub 433 n y C2N C3N NAD doub 434 n y C2N H2N NAD sing 435 n n C3N C7N NAD sing 436 n n C3N C4N NAD sing 437 n y C7N O7N NAD doub 438 n n C7N N7N NAD sing 439 n n N7N H71N NAD sing 440 n n N7N H72N NAD sing 441 n n C4N C5N NAD doub 442 n y C4N H4N NAD sing 443 n n C5N C6N NAD sing 444 n y C5N H5N NAD sing 445 n n C6N H6N NAD sing 446 n n # _atom_sites.entry_id 6U9O _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code Q 2 GTP A 1 601 517 GTP GTP . R 2 GTP A 1 602 518 GTP GTP . S 3 ATP A 1 603 519 ATP ATP . T 4 IMP A 1 604 603 IMP IMP . U 5 NAD A 1 605 701 NAD NAD . V 2 GTP B 1 601 517 GTP GTP . W 2 GTP B 1 602 518 GTP GTP . X 3 ATP B 1 603 519 ATP ATP . Y 4 IMP B 1 604 603 IMP IMP . Z 5 NAD B 1 605 701 NAD NAD . AA 2 GTP C 1 601 517 GTP GTP . BA 2 GTP C 1 602 518 GTP GTP . CA 3 ATP C 1 603 519 ATP ATP . DA 4 IMP C 1 604 603 IMP IMP . EA 5 NAD C 1 605 701 NAD NAD . FA 2 GTP D 1 601 517 GTP GTP . GA 2 GTP D 1 602 518 GTP GTP . HA 3 ATP D 1 603 519 ATP ATP . IA 4 IMP D 1 604 603 IMP IMP . JA 5 NAD D 1 605 701 NAD NAD . KA 2 GTP E 1 601 517 GTP GTP . LA 2 GTP E 1 602 518 GTP GTP . MA 3 ATP E 1 603 519 ATP ATP . NA 4 IMP E 1 604 603 IMP IMP . OA 5 NAD E 1 605 701 NAD NAD . PA 2 GTP F 1 601 517 GTP GTP . QA 2 GTP F 1 602 518 GTP GTP . RA 3 ATP F 1 603 519 ATP ATP . SA 4 IMP F 1 604 603 IMP IMP . TA 5 NAD F 1 605 701 NAD NAD . UA 2 GTP G 1 601 517 GTP GTP . VA 2 GTP G 1 602 518 GTP GTP . WA 3 ATP G 1 603 519 ATP ATP . XA 4 IMP G 1 604 603 IMP IMP . YA 5 NAD G 1 605 701 NAD NAD . ZA 2 GTP H 1 601 517 GTP GTP . AB 2 GTP H 1 602 518 GTP GTP . BB 3 ATP H 1 603 519 ATP ATP . CB 4 IMP H 1 604 603 IMP IMP . DB 5 NAD H 1 605 701 NAD NAD . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA NAD . . . YA 5 171.41 132.648 147.767 1 146.03 ? PA NAD 605 G 1 HETATM 2 O O1A NAD . . . YA 5 170.052 132.382 147.167 1 146.03 ? O1A NAD 605 G 1 HETATM 3 O O2A NAD . . . YA 5 171.513 131.953 149.104 1 146.03 ? O2A NAD 605 G 1 HETATM 4 O O5B NAD . . . YA 5 172.6 132.109 146.759 1 146.03 ? O5B NAD 605 G 1 HETATM 5 C C5B NAD . . . YA 5 173.921 132.418 147.106 1 146.03 ? C5B NAD 605 G 1 HETATM 6 C C4B NAD . . . YA 5 174.686 132.932 145.9 1 146.03 ? C4B NAD 605 G 1 HETATM 7 O O4B NAD . . . YA 5 175.193 131.681 145.014 1 146.03 ? O4B NAD 605 G 1 HETATM 8 C C3B NAD . . . YA 5 173.923 133.689 145.167 1 146.03 ? C3B NAD 605 G 1 HETATM 9 O O3B NAD . . . YA 5 174.554 135.035 145.034 1 146.03 ? O3B NAD 605 G 1 HETATM 10 C C2B NAD . . . YA 5 173.828 133.037 143.778 1 146.03 ? C2B NAD 605 G 1 HETATM 11 O O2B NAD . . . YA 5 174.407 133.853 142.863 1 146.03 ? O2B NAD 605 G 1 HETATM 12 C C1B NAD . . . YA 5 174.599 131.709 143.854 1 146.03 ? C1B NAD 605 G 1 HETATM 13 N N9A NAD . . . YA 5 173.649 130.587 143.738 1 146.03 ? N9A NAD 605 G 1 HETATM 14 C C8A NAD . . . YA 5 172.334 130.401 143.681 1 146.03 ? C8A NAD 605 G 1 HETATM 15 N N7A NAD . . . YA 5 172.135 129.085 143.576 1 146.03 ? N7A NAD 605 G 1 HETATM 16 C C5A NAD . . . YA 5 173.329 128.482 143.566 1 146.03 ? C5A NAD 605 G 1 HETATM 17 C C6A NAD . . . YA 5 173.686 127.161 143.479 1 146.03 ? C6A NAD 605 G 1 HETATM 18 N N6A NAD . . . YA 5 173.006 125.891 143.36 1 146.03 ? N6A NAD 605 G 1 HETATM 19 N N1A NAD . . . YA 5 174.96 126.815 143.491 1 146.03 ? N1A NAD 605 G 1 HETATM 20 C C2A NAD . . . YA 5 175.921 127.76 143.594 1 146.03 ? C2A NAD 605 G 1 HETATM 21 N N3A NAD . . . YA 5 175.573 129.06 143.68 1 146.03 ? N3A NAD 605 G 1 HETATM 22 C C4A NAD . . . YA 5 174.277 129.413 143.666 1 146.03 ? C4A NAD 605 G 1 HETATM 23 O O3 NAD . . . YA 5 171.608 134.265 147.974 1 146.03 ? O3 NAD 605 G 1 HETATM 24 P PN NAD . . . YA 5 170.976 135.395 146.963 1 146.03 ? PN NAD 605 G 1 HETATM 25 O O1N NAD . . . YA 5 170.62 134.765 145.639 1 146.03 ? O1N NAD 605 G 1 HETATM 26 O O2N NAD . . . YA 5 171.987 136.493 146.757 1 146.03 ? O2N NAD 605 G 1 HETATM 27 O O5D NAD . . . YA 5 169.63 136.01 147.685 1 146.03 ? O5D NAD 605 G 1 HETATM 28 C C5D NAD . . . YA 5 169.315 135.501 148.948 1 146.03 ? C5D NAD 605 G 1 HETATM 29 C C4D NAD . . . YA 5 168.241 136.357 149.584 1 146.03 ? C4D NAD 605 G 1 HETATM 30 O O4D NAD . . . YA 5 168.609 137.916 149.392 1 146.03 ? O4D NAD 605 G 1 HETATM 31 C C3D NAD . . . YA 5 167.103 136.149 148.98 1 146.03 ? C3D NAD 605 G 1 HETATM 32 O O3D NAD . . . YA 5 166.159 135.451 149.902 1 146.03 ? O3D NAD 605 G 1 HETATM 33 C C2D NAD . . . YA 5 166.529 137.531 148.627 1 146.03 ? C2D NAD 605 G 1 HETATM 34 O O2D NAD . . . YA 5 165.272 137.635 149.124 1 146.03 ? O2D NAD 605 G 1 HETATM 35 C C1D NAD . . . YA 5 167.47 138.54 149.311 1 146.03 ? C1D NAD 605 G 1 HETATM 36 N N1N NAD . . . YA 5 167.636 139.745 148.479 1 146.03 ? N1N NAD 605 G 1 HETATM 37 C C2N NAD . . . YA 5 166.574 140.305 147.86 1 146.03 ? C2N NAD 605 G 1 HETATM 38 C C3N NAD . . . YA 5 166.766 141.432 147.081 1 146.03 ? C3N NAD 605 G 1 HETATM 39 C C7N NAD . . . YA 5 165.585 142.085 146.377 1 146.03 ? C7N NAD 605 G 1 HETATM 40 O O7N NAD . . . YA 5 164.572 141.49 146.253 1 146.03 ? O7N NAD 605 G 1 HETATM 41 N N7N NAD . . . YA 5 165.703 143.443 145.871 1 146.03 ? N7N NAD 605 G 1 HETATM 42 C C4N NAD . . . YA 5 168.001 141.963 146.938 1 146.03 ? C4N NAD 605 G 1 HETATM 43 C C5N NAD . . . YA 5 169.059 141.407 147.57 1 146.03 ? C5N NAD 605 G 1 HETATM 44 C C6N NAD . . . YA 5 168.868 140.276 148.344 1 146.03 ? C6N NAD 605 G 1 # _model_server_stats.io_time_ms 36 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 47 _model_server_stats.query_time_ms 211 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 44 #